Wall clock time and date at job start Mon Mar 30 2020 06:25:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99929 * 2 1 4 4 H 1.48502 * 109.46653 * 239.99948 * 3 2 1 5 5 H 1.48501 * 109.47054 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47353 * 119.99852 * 3 2 1 7 7 C 1.37881 * 120.00369 * 179.97438 * 2 1 3 8 8 H 1.07989 * 120.00248 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99448 * 359.97438 * 7 2 1 10 10 H 1.08993 * 109.48177 * 299.97835 * 9 7 2 11 11 C 1.53095 * 109.48752 * 179.97438 * 9 7 2 12 12 C 1.53177 * 109.16419 * 182.40111 * 11 9 7 13 13 C 1.53177 * 109.03997 * 56.97800 * 12 11 9 14 14 C 1.53093 * 109.16797 * 303.03471 * 13 12 11 15 15 H 1.09004 * 109.47826 * 297.60711 * 14 13 12 16 16 C 1.50696 * 109.48452 * 177.58480 * 14 13 12 17 17 C 1.34666 * 126.59589 * 85.04809 * 16 14 13 18 18 N 1.34121 * 108.02399 * 179.97438 * 17 16 14 19 19 C 1.30504 * 109.25569 * 359.97438 * 18 17 16 20 20 N 1.35039 * 108.70033 * 0.02562 * 19 18 17 21 21 C 1.46494 * 126.39794 * 179.97438 * 20 19 18 22 22 C 1.52994 * 117.50011 * 8.59605 * 21 20 19 23 23 C 1.52995 * 60.00431 * 252.50938 * 22 21 20 24 24 O 1.42902 * 109.42264 * 57.59062 * 14 13 12 25 25 H 0.96997 * 119.99727 * 359.97438 * 1 2 3 26 26 H 1.08997 * 109.52343 * 302.31098 * 11 9 7 27 27 H 1.09004 * 109.51921 * 62.43767 * 11 9 7 28 28 H 1.08997 * 109.54369 * 176.85064 * 12 11 9 29 29 H 1.08998 * 109.54216 * 297.02892 * 12 11 9 30 30 H 1.09006 * 109.53223 * 183.12598 * 13 12 11 31 31 H 1.09001 * 109.51461 * 62.93556 * 13 12 11 32 32 H 1.08001 * 125.98583 * 0.02562 * 17 16 14 33 33 H 1.08002 * 125.64666 * 180.02562 * 19 18 17 34 34 H 1.09006 * 115.55341 * 154.30535 * 21 20 19 35 35 H 1.09002 * 117.49886 * 0.02562 * 22 21 20 36 36 H 1.09003 * 117.50067 * 145.02067 * 22 21 20 37 37 H 1.09002 * 117.50402 * 252.51041 * 23 22 21 38 38 H 1.08998 * 117.49826 * 107.48339 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0017 10 1 0.6250 -2.5566 0.8920 11 6 2.2456 -3.6631 0.0015 12 6 1.4731 -4.9845 -0.0580 13 6 0.5778 -4.9845 -1.3009 14 6 -0.3521 -3.7694 -1.2506 15 1 -0.9997 -3.8432 -0.3769 16 6 -1.1951 -3.7296 -2.4991 17 6 -2.3549 -4.3821 -2.7058 18 7 -2.7856 -4.0819 -3.9400 19 6 -1.9371 -3.2677 -4.5058 20 7 -0.9296 -3.0225 -3.6407 21 6 0.2308 -2.1609 -3.8795 22 6 0.2279 -1.3077 -5.1494 23 6 1.1515 -2.5231 -5.0466 24 8 0.4295 -2.5761 -1.1650 25 1 -0.4849 0.8400 0.0004 26 1 2.8990 -3.5838 -0.8673 27 1 2.8443 -3.6308 0.9118 28 1 2.1760 -5.8156 -0.1149 29 1 0.8579 -5.0877 0.8359 30 1 -0.0170 -5.8977 -1.3216 31 1 1.1976 -4.9320 -2.1960 32 1 -2.8515 -5.0324 -2.0009 33 1 -2.0260 -2.8579 -5.5011 34 1 0.6919 -1.7354 -2.9881 35 1 -0.6377 -1.3872 -5.8072 36 1 0.6869 -0.3206 -5.0938 37 1 2.2182 -2.3357 -4.9231 38 1 0.8937 -3.4025 -5.6367 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393859640.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:17 Heat of formation + Delta-G solvation = 34.177484 kcal Electronic energy + Delta-G solvation = -20721.920046 eV Core-core repulsion = 17759.040033 eV Total energy + Delta-G solvation = -2962.880014 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.69426 -38.13075 -36.88543 -33.13350 -32.60323 -31.52543 -30.81869 -28.26766 -25.61331 -23.69592 -22.80627 -22.35965 -21.99252 -20.52518 -19.46217 -19.05149 -16.96693 -16.55034 -15.27783 -14.96149 -14.76212 -14.58978 -14.37546 -13.77959 -13.60314 -13.40233 -13.19187 -12.75577 -12.40247 -12.10192 -11.84050 -11.47574 -11.05101 -11.01803 -10.93296 -10.77393 -10.57214 -10.42381 -10.31525 -9.99785 -9.77604 -9.56803 -8.97754 -8.82093 -8.60482 -8.15099 -7.73715 -6.11483 -4.25277 2.45984 3.18779 3.23243 3.29734 3.30967 3.56654 4.02015 4.31634 4.70808 4.76507 5.03369 5.05982 5.12305 5.31257 5.41347 5.50138 5.58283 5.65089 5.68604 5.92749 5.94500 5.99968 6.05719 6.10788 6.14937 6.27976 6.39107 6.55483 6.64159 6.77120 6.80076 6.86210 6.95693 7.20866 7.42050 7.70642 7.78919 8.17527 8.49534 8.64578 8.96788 9.45436 10.94775 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.017118 B = 0.008517 C = 0.006901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.323523 B = 3286.564283 C = 4056.384802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.080 3.920 3 Si 0.888 3.112 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.529 4.529 8 H 0.064 0.936 9 C 0.220 3.780 10 H 0.016 0.984 11 C -0.144 4.144 12 C -0.120 4.120 13 C -0.136 4.136 14 C 0.156 3.844 15 H 0.064 0.936 16 C 0.024 3.976 17 C -0.045 4.045 18 N -0.496 5.496 19 C 0.157 3.843 20 N -0.406 5.406 21 C 0.072 3.928 22 C -0.183 4.183 23 C -0.185 4.185 24 O -0.354 6.354 25 H 0.262 0.738 26 H 0.055 0.945 27 H 0.058 0.942 28 H 0.052 0.948 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.165 0.835 33 H 0.195 0.805 34 H 0.180 0.820 35 H 0.096 0.904 36 H 0.109 0.891 37 H 0.107 0.893 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.296 -5.804 -6.293 8.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C -0.127 4.127 3 Si 0.715 3.285 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.566 4.566 8 H 0.082 0.918 9 C 0.165 3.835 10 H 0.034 0.966 11 C -0.182 4.182 12 C -0.158 4.158 13 C -0.175 4.175 14 C 0.096 3.904 15 H 0.082 0.918 16 C -0.093 4.093 17 C -0.193 4.193 18 N -0.214 5.214 19 C -0.124 4.124 20 N -0.086 5.086 21 C -0.032 4.032 22 C -0.220 4.220 23 C -0.223 4.223 24 O -0.274 6.274 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.182 0.818 33 H 0.211 0.789 34 H 0.197 0.803 35 H 0.114 0.886 36 H 0.127 0.873 37 H 0.125 0.875 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 0.508 -5.751 -6.818 8.934 hybrid contribution 1.118 1.042 0.399 1.580 sum 1.626 -4.709 -6.418 8.125 Atomic orbital electron populations 1.70028 1.05917 1.26775 1.46370 1.25065 0.94735 0.99153 0.93756 0.86736 0.79763 0.83141 0.78816 1.20088 1.21177 1.20037 1.20953 0.92659 0.89547 1.53485 0.91797 1.19726 0.86985 0.92118 0.84638 0.96595 1.22259 0.99574 0.95208 1.01135 1.21617 0.98354 0.98429 0.97371 1.22124 0.98478 0.98064 0.98785 1.20148 0.91112 0.88264 0.90914 0.91802 1.21269 0.99031 0.99374 0.89577 1.21838 0.95393 1.06445 0.95621 1.70204 1.27867 1.15316 1.08042 1.24595 0.87429 1.02109 0.98238 1.44646 1.18032 1.33759 1.12144 1.22676 0.88179 0.95820 0.96521 1.23333 1.02287 0.96794 0.99627 1.23406 0.98179 0.99023 1.01716 1.88218 1.57791 1.35085 1.46289 0.92791 0.92581 0.92353 0.92945 0.92429 0.92162 0.92056 0.81791 0.78876 0.80339 0.88552 0.87301 0.87465 0.88782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.96 12.84 55.43 0.71 -23.25 16 2 C 0.08 2.12 5.40 -17.82 -0.10 2.02 16 3 Si 0.89 20.28 29.54 -169.99 -5.02 15.26 16 4 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 5 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.53 -13.83 8.80 -34.44 -0.30 -14.14 16 8 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 9 C 0.22 5.27 2.50 -27.83 -0.07 5.20 16 10 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 11 C -0.14 -2.84 5.36 -26.59 -0.14 -2.98 16 12 C -0.12 -2.00 6.03 -26.55 -0.16 -2.16 16 13 C -0.14 -2.32 5.40 -26.59 -0.14 -2.46 16 14 C 0.16 3.10 3.09 -27.84 -0.09 3.01 16 15 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 16 C 0.02 0.47 6.05 -81.60 -0.49 -0.03 16 17 C -0.05 -0.84 11.79 -17.82 -0.21 -1.05 16 18 N -0.50 -9.37 11.25 -14.67 -0.17 -9.53 16 19 C 0.16 2.70 11.89 -90.37 -1.07 1.63 16 20 N -0.41 -7.48 3.08 -106.92 -0.33 -7.81 16 21 C 0.07 1.25 6.35 -67.93 -0.43 0.82 16 22 C -0.18 -2.50 9.98 -26.74 -0.27 -2.77 16 23 C -0.19 -2.54 10.40 -26.73 -0.28 -2.82 16 24 O -0.35 -8.25 6.44 -35.23 -0.23 -8.48 16 25 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 26 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 27 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 28 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.16 2.62 8.06 -52.49 -0.42 2.20 16 33 H 0.19 2.59 7.03 -52.49 -0.37 2.22 16 34 H 0.18 3.85 5.71 -51.93 -0.30 3.55 16 35 H 0.10 1.15 6.84 -51.93 -0.36 0.79 16 36 H 0.11 1.42 8.14 -51.93 -0.42 1.00 16 37 H 0.11 1.39 8.14 -51.93 -0.42 0.96 16 38 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 310.77 15.07 4.68 4.68 Total: -1.00 -29.13 310.77 -9.74 -38.87 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: -5.64 Total: 5.99 kcal Atomic # 6 Polarization: -11.97 SS G_CDS: -3.76 Total: -15.73 kcal Atomic # 7 Polarization: -40.81 SS G_CDS: 0.22 Total: -40.59 kcal Atomic # 8 Polarization: -8.25 SS G_CDS: -0.23 Total: -8.48 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -29.13 -9.74 -38.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393859640.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.049 kcal (2) G-P(sol) polarization free energy of solvation -29.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.871 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds