Wall clock time and date at job start Mon Mar 30 2020 06:25:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99929 * 2 1 4 4 H 1.48502 * 109.46653 * 239.99948 * 3 2 1 5 5 H 1.48501 * 109.47054 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47353 * 119.99852 * 3 2 1 7 7 C 1.37881 * 120.00369 * 179.97438 * 2 1 3 8 8 H 1.07989 * 120.00248 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99448 * 359.97438 * 7 2 1 10 10 H 1.08993 * 109.48177 * 299.97835 * 9 7 2 11 11 C 1.53095 * 109.48752 * 179.97438 * 9 7 2 12 12 C 1.53177 * 109.16419 * 182.40111 * 11 9 7 13 13 C 1.53177 * 109.03997 * 56.97800 * 12 11 9 14 14 C 1.53093 * 109.16797 * 303.03471 * 13 12 11 15 15 H 1.09004 * 109.47826 * 297.60711 * 14 13 12 16 16 C 1.50696 * 109.48452 * 177.58480 * 14 13 12 17 17 C 1.34666 * 126.59589 * 85.04809 * 16 14 13 18 18 N 1.34121 * 108.02399 * 179.97438 * 17 16 14 19 19 C 1.30504 * 109.25569 * 359.97438 * 18 17 16 20 20 N 1.35039 * 108.70033 * 0.02562 * 19 18 17 21 21 C 1.46494 * 126.39794 * 179.97438 * 20 19 18 22 22 C 1.52994 * 117.50011 * 8.59605 * 21 20 19 23 23 C 1.52995 * 60.00431 * 252.50938 * 22 21 20 24 24 O 1.42902 * 109.42264 * 57.59062 * 14 13 12 25 25 H 0.96997 * 119.99727 * 359.97438 * 1 2 3 26 26 H 1.08997 * 109.52343 * 302.31098 * 11 9 7 27 27 H 1.09004 * 109.51921 * 62.43767 * 11 9 7 28 28 H 1.08997 * 109.54369 * 176.85064 * 12 11 9 29 29 H 1.08998 * 109.54216 * 297.02892 * 12 11 9 30 30 H 1.09006 * 109.53223 * 183.12598 * 13 12 11 31 31 H 1.09001 * 109.51461 * 62.93556 * 13 12 11 32 32 H 1.08001 * 125.98583 * 0.02562 * 17 16 14 33 33 H 1.08002 * 125.64666 * 180.02562 * 19 18 17 34 34 H 1.09006 * 115.55341 * 154.30535 * 21 20 19 35 35 H 1.09002 * 117.49886 * 0.02562 * 22 21 20 36 36 H 1.09003 * 117.50067 * 145.02067 * 22 21 20 37 37 H 1.09002 * 117.50402 * 252.51041 * 23 22 21 38 38 H 1.08998 * 117.49826 * 107.48339 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0017 10 1 0.6250 -2.5566 0.8920 11 6 2.2456 -3.6631 0.0015 12 6 1.4731 -4.9845 -0.0580 13 6 0.5778 -4.9845 -1.3009 14 6 -0.3521 -3.7694 -1.2506 15 1 -0.9997 -3.8432 -0.3769 16 6 -1.1951 -3.7296 -2.4991 17 6 -2.3549 -4.3821 -2.7058 18 7 -2.7856 -4.0819 -3.9400 19 6 -1.9371 -3.2677 -4.5058 20 7 -0.9296 -3.0225 -3.6407 21 6 0.2308 -2.1609 -3.8795 22 6 0.2279 -1.3077 -5.1494 23 6 1.1515 -2.5231 -5.0466 24 8 0.4295 -2.5761 -1.1650 25 1 -0.4849 0.8400 0.0004 26 1 2.8990 -3.5838 -0.8673 27 1 2.8443 -3.6308 0.9118 28 1 2.1760 -5.8156 -0.1149 29 1 0.8579 -5.0877 0.8359 30 1 -0.0170 -5.8977 -1.3216 31 1 1.1976 -4.9320 -2.1960 32 1 -2.8515 -5.0324 -2.0009 33 1 -2.0260 -2.8579 -5.5011 34 1 0.6919 -1.7354 -2.9881 35 1 -0.6377 -1.3872 -5.8072 36 1 0.6869 -0.3206 -5.0938 37 1 2.2182 -2.3357 -4.9231 38 1 0.8937 -3.4025 -5.6367 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393859640.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:16 Heat of formation + Delta-G solvation = 19.507686 kcal Electronic energy + Delta-G solvation = -20722.556176 eV Core-core repulsion = 17759.040033 eV Total energy + Delta-G solvation = -2963.516144 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.07764 -39.77851 -38.09996 -35.02144 -34.17691 -33.09456 -32.31740 -29.85109 -27.39863 -25.22211 -24.16810 -23.70337 -23.45765 -21.89998 -21.01311 -20.51131 -18.67269 -18.12176 -16.71747 -16.68772 -16.39494 -16.08791 -15.89828 -15.22353 -15.16807 -14.70122 -14.53790 -14.49026 -14.01313 -13.55542 -13.31524 -12.85434 -12.72504 -12.52626 -12.50542 -12.22109 -12.16759 -11.86089 -11.84175 -11.66691 -11.33670 -11.05700 -10.80681 -10.56232 -10.13469 -9.83400 -9.20584 -8.14658 -6.35081 1.07887 1.41088 1.41576 1.49700 1.86775 2.16223 2.39342 2.83696 2.96454 3.44473 3.53716 3.78318 3.89020 3.94659 4.05252 4.08594 4.15235 4.29442 4.45680 4.47752 4.53486 4.62446 4.71745 4.86096 4.87394 4.96136 5.02522 5.10171 5.14306 5.19213 5.26511 5.31256 5.50713 5.59912 5.77165 5.80143 6.22366 6.38153 6.66688 7.09441 7.14740 7.40749 8.91361 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.017118 B = 0.008517 C = 0.006901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.323523 B = 3286.564283 C = 4056.384802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.033 3.967 3 Si 0.952 3.048 4 H -0.267 1.267 5 H -0.287 1.287 6 H -0.268 1.268 7 C -0.547 4.547 8 H 0.065 0.935 9 C 0.218 3.782 10 H -0.021 1.021 11 C -0.136 4.136 12 C -0.114 4.114 13 C -0.124 4.124 14 C 0.151 3.849 15 H 0.048 0.952 16 C -0.006 4.006 17 C -0.048 4.048 18 N -0.518 5.518 19 C 0.166 3.834 20 N -0.408 5.408 21 C 0.031 3.969 22 C -0.161 4.161 23 C -0.160 4.160 24 O -0.369 6.369 25 H 0.259 0.741 26 H 0.053 0.947 27 H 0.063 0.937 28 H 0.084 0.916 29 H 0.060 0.940 30 H 0.084 0.916 31 H 0.056 0.944 32 H 0.182 0.818 33 H 0.232 0.768 34 H 0.133 0.867 35 H 0.120 0.880 36 H 0.113 0.887 37 H 0.113 0.887 38 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.105 -6.364 -8.024 10.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.170 4.170 3 Si 0.777 3.223 4 H -0.191 1.191 5 H -0.213 1.213 6 H -0.193 1.193 7 C -0.584 4.584 8 H 0.084 0.916 9 C 0.162 3.838 10 H -0.004 1.004 11 C -0.174 4.174 12 C -0.151 4.151 13 C -0.162 4.162 14 C 0.091 3.909 15 H 0.066 0.934 16 C -0.122 4.122 17 C -0.195 4.195 18 N -0.237 5.237 19 C -0.115 4.115 20 N -0.088 5.088 21 C -0.072 4.072 22 C -0.199 4.199 23 C -0.198 4.198 24 O -0.289 6.289 25 H 0.068 0.932 26 H 0.072 0.928 27 H 0.081 0.919 28 H 0.103 0.897 29 H 0.079 0.921 30 H 0.103 0.897 31 H 0.075 0.925 32 H 0.199 0.801 33 H 0.248 0.752 34 H 0.151 0.849 35 H 0.139 0.861 36 H 0.131 0.869 37 H 0.131 0.869 38 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 1.342 -6.320 -8.544 10.712 hybrid contribution 0.836 1.211 0.930 1.741 sum 2.178 -5.109 -7.615 9.425 Atomic orbital electron populations 1.70176 1.07504 1.27223 1.48024 1.25816 0.95393 1.02510 0.93329 0.85724 0.78491 0.78877 0.79224 1.19134 1.21295 1.19277 1.21348 0.92999 0.90967 1.53057 0.91648 1.19568 0.87311 0.93272 0.83621 1.00350 1.22107 0.98736 0.95314 1.01205 1.21596 0.98618 0.97566 0.97366 1.22023 0.98034 0.97524 0.98663 1.20256 0.91268 0.88359 0.90980 0.93395 1.21304 0.99819 1.01003 0.90122 1.22171 0.94988 1.06359 0.96004 1.70232 1.28627 1.16573 1.08286 1.25340 0.86155 1.00897 0.99148 1.44737 1.18511 1.33513 1.12014 1.22420 0.89658 0.98624 0.96548 1.23476 1.02859 0.96839 0.96706 1.23447 0.98118 0.99569 0.98637 1.88180 1.58284 1.37150 1.45242 0.93190 0.92799 0.91876 0.89718 0.92124 0.89732 0.92483 0.80121 0.75186 0.84920 0.86138 0.86882 0.86852 0.87274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -51.95 12.84 21.45 0.28 -51.67 16 2 C 0.03 1.77 5.40 84.66 0.46 2.23 16 3 Si 0.95 42.24 29.54 68.60 2.03 44.26 16 4 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 5 H -0.29 -12.69 7.11 99.48 0.71 -11.99 16 6 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 7 C -0.55 -29.39 8.80 25.60 0.23 -29.16 16 8 H 0.07 3.39 7.74 -2.92 -0.02 3.37 16 9 C 0.22 10.81 2.50 29.88 0.07 10.89 16 10 H -0.02 -1.17 8.14 -2.39 -0.02 -1.19 16 11 C -0.14 -5.36 5.36 30.69 0.16 -5.19 16 12 C -0.11 -3.65 6.03 30.71 0.19 -3.47 16 13 C -0.12 -4.12 5.40 30.68 0.17 -3.95 16 14 C 0.15 6.16 3.09 29.88 0.09 6.25 16 15 H 0.05 2.05 8.14 -2.38 -0.02 2.03 16 16 C -0.01 -0.23 6.05 40.95 0.25 0.02 16 17 C -0.05 -1.75 11.79 83.52 0.98 -0.76 16 18 N -0.52 -18.88 11.25 -200.32 -2.25 -21.13 16 19 C 0.17 5.37 11.89 180.26 2.14 7.51 16 20 N -0.41 -14.77 3.08 -492.18 -1.52 -16.29 16 21 C 0.03 1.08 6.35 44.99 0.29 1.36 16 22 C -0.16 -4.04 9.98 30.59 0.31 -3.73 16 23 C -0.16 -4.03 10.40 30.59 0.32 -3.71 16 24 O -0.37 -17.89 6.44 -148.98 -0.96 -18.85 16 25 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 26 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 27 H 0.06 2.38 8.14 -2.38 -0.02 2.36 16 28 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 29 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.08 2.39 8.14 -2.38 -0.02 2.37 16 31 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.18 5.69 8.06 -2.91 -0.02 5.67 16 33 H 0.23 5.33 7.03 -2.91 -0.02 5.31 16 34 H 0.13 5.95 5.71 -2.38 -0.01 5.94 16 35 H 0.12 2.41 6.84 -2.39 -0.02 2.40 16 36 H 0.11 2.73 8.14 -2.39 -0.02 2.71 16 37 H 0.11 2.70 8.14 -2.39 -0.02 2.68 16 38 H 0.11 2.45 8.14 -2.39 -0.02 2.43 16 Total: -1.00 -65.15 310.77 4.26 -60.89 By element: Atomic # 1 Polarization: 23.47 SS G_CDS: 1.04 Total: 24.51 kcal Atomic # 6 Polarization: -27.38 SS G_CDS: 5.65 Total: -21.73 kcal Atomic # 7 Polarization: -85.60 SS G_CDS: -3.50 Total: -89.09 kcal Atomic # 8 Polarization: -17.89 SS G_CDS: -0.96 Total: -18.85 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.26 kcal Total: -65.15 4.26 -60.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393859640.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.398 kcal (2) G-P(sol) polarization free energy of solvation -65.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds