Wall clock time and date at job start Mon Mar 30 2020 06:35:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47384 * 2 1 4 4 C 1.50697 * 109.46838 * 120.00280 * 2 1 3 5 5 C 1.36201 * 120.04811 * 120.00044 * 4 2 1 6 6 C 1.41024 * 118.59565 * 179.97438 * 5 4 2 7 7 O 1.21974 * 120.70845 * 180.02562 * 6 5 4 8 8 N 1.35029 * 118.58002 * 0.02562 * 6 5 4 9 9 C 1.46494 * 120.03907 * 180.02562 * 8 6 5 10 10 C 1.52998 * 109.47502 * 92.20474 * 9 8 6 11 11 C 1.50695 * 115.55649 * 174.71047 * 10 9 8 12 12 H 1.07999 * 120.00494 * 219.10934 * 11 10 9 13 13 C 1.37881 * 119.99417 * 39.38690 * 11 10 9 14 14 N 1.31512 * 120.00582 * 10.16895 * 13 11 10 15 15 Si 1.86807 * 119.99572 * 190.16778 * 13 11 10 16 16 H 1.48494 * 109.47351 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.47062 * 120.00110 * 15 13 11 18 18 H 1.48500 * 109.47041 * 239.99797 * 15 13 11 19 19 C 1.53001 * 117.51703 * 320.41631 * 10 9 8 20 20 C 1.52991 * 60.00500 * 107.47722 * 19 10 9 21 21 C 1.34744 * 119.91866 * 0.27259 * 8 6 5 22 22 N 1.30645 * 121.48948 * 359.43171 * 21 8 6 23 23 H 1.08997 * 109.47565 * 300.00165 * 1 2 3 24 24 H 1.09008 * 109.46738 * 60.00168 * 1 2 3 25 25 H 1.08997 * 109.47562 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46873 * 239.99629 * 2 1 3 27 27 H 1.08999 * 109.46975 * 299.99899 * 3 2 1 28 28 H 1.09003 * 109.46557 * 59.99681 * 3 2 1 29 29 H 1.08991 * 109.47417 * 179.97438 * 3 2 1 30 30 H 1.08004 * 120.70247 * 359.97438 * 5 4 2 31 31 H 1.09003 * 109.47660 * 332.20486 * 9 8 6 32 32 H 1.08997 * 109.47313 * 212.20531 * 9 8 6 33 33 H 0.96998 * 120.00367 * 184.98749 * 14 13 11 34 34 H 1.08999 * 117.50258 * 214.97249 * 19 10 9 35 35 H 1.09006 * 117.50086 * 359.97438 * 19 10 9 36 36 H 1.09004 * 117.50019 * 252.51715 * 20 19 10 37 37 H 1.09002 * 117.50096 * 107.48707 * 20 19 10 38 38 H 1.08001 * 119.25628 * 179.70578 * 21 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7105 1.2304 5 6 2.8153 -1.8179 1.1066 6 6 3.2688 -2.4584 2.2783 7 8 3.9723 -3.4526 2.2122 8 7 2.9074 -1.9476 3.4748 9 6 3.3609 -2.5871 4.7124 10 6 4.6679 -1.9384 5.1725 11 6 5.1937 -2.4090 6.5040 12 1 5.6419 -1.7032 7.1877 13 6 5.1078 -3.7417 6.8470 14 7 4.7552 -4.6315 5.9452 15 14 5.4925 -4.2833 8.5930 16 1 5.8609 -3.0986 9.4090 17 1 4.2971 -4.9377 9.1829 18 1 6.6245 -5.2442 8.5751 19 6 5.6932 -1.5741 4.0969 20 6 4.8983 -0.4723 4.8002 21 6 2.1252 -0.8518 3.5292 22 7 1.7098 -0.2554 2.4436 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8901 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.6767 1.9563 -0.8900 28 1 1.6766 1.9562 0.8900 29 1 3.1300 1.4425 0.0005 30 1 3.0833 -2.1976 0.1316 31 1 3.5261 -3.6495 4.5331 32 1 2.6020 -2.4628 5.4848 33 1 4.6244 -5.5575 6.2026 34 1 6.7481 -1.6750 4.3522 35 1 5.4369 -1.7970 3.0611 36 1 4.1187 0.0299 4.2272 37 1 5.4300 0.1518 5.5184 38 1 1.8387 -0.4551 4.4920 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395569911.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:52 Heat of formation + Delta-G solvation = 23.471011 kcal Electronic energy + Delta-G solvation = -20208.483729 eV Core-core repulsion = 17245.139447 eV Total energy + Delta-G solvation = -2963.344281 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.40999 -37.74394 -36.75190 -35.45397 -32.89234 -32.26427 -30.38555 -27.14792 -27.11034 -25.59855 -24.19701 -23.41291 -21.21664 -20.38157 -19.35692 -17.66465 -16.81141 -16.48406 -16.02919 -15.46615 -14.71682 -14.55955 -14.18995 -13.74727 -13.65802 -13.27112 -13.14710 -12.48265 -12.38659 -12.16560 -12.04797 -11.72578 -11.51408 -11.23723 -11.08004 -10.94640 -10.84141 -10.56721 -10.33694 -10.21128 -9.65293 -9.43176 -9.28146 -9.17198 -8.86006 -8.16951 -7.90846 -6.20110 -4.26109 1.07232 2.35139 3.16253 3.22458 3.29911 3.32709 4.09942 4.24565 4.27117 4.65308 4.84273 4.94385 5.15884 5.24220 5.25365 5.40172 5.59091 5.62639 5.72909 5.85620 5.87523 5.89868 6.01530 6.12431 6.18844 6.22929 6.26802 6.31768 6.49657 6.64073 6.74765 6.92472 7.03846 7.21158 7.31537 7.42800 7.76818 8.18288 8.22656 8.53656 8.72107 9.35901 10.83658 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.038510 B = 0.005262 C = 0.005122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.909709 B = 5319.845729 C = 5465.123788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.045 4.045 3 C -0.139 4.139 4 C 0.179 3.821 5 C -0.303 4.303 6 C 0.513 3.487 7 O -0.523 6.523 8 N -0.507 5.507 9 C 0.114 3.886 10 C 0.046 3.954 11 C -0.491 4.491 12 H 0.067 0.933 13 C 0.069 3.931 14 N -0.872 5.872 15 Si 0.897 3.103 16 H -0.271 1.271 17 H -0.281 1.281 18 H -0.283 1.283 19 C -0.194 4.194 20 C -0.215 4.215 21 C 0.380 3.620 22 N -0.556 5.556 23 H 0.067 0.933 24 H 0.057 0.943 25 H 0.052 0.948 26 H 0.083 0.917 27 H 0.057 0.943 28 H 0.067 0.933 29 H 0.053 0.947 30 H 0.143 0.857 31 H 0.147 0.853 32 H 0.079 0.921 33 H 0.266 0.734 34 H 0.078 0.922 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.079 0.921 38 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.568 8.790 -7.485 14.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.064 4.064 3 C -0.197 4.197 4 C 0.058 3.942 5 C -0.329 4.329 6 C 0.312 3.688 7 O -0.399 6.399 8 N -0.221 5.221 9 C -0.006 4.006 10 C 0.045 3.955 11 C -0.529 4.529 12 H 0.086 0.914 13 C -0.135 4.135 14 N -0.508 5.508 15 Si 0.724 3.276 16 H -0.196 1.196 17 H -0.207 1.207 18 H -0.209 1.209 19 C -0.232 4.232 20 C -0.253 4.253 21 C 0.096 3.904 22 N -0.281 5.281 23 H 0.086 0.914 24 H 0.076 0.924 25 H 0.071 0.929 26 H 0.101 0.899 27 H 0.076 0.924 28 H 0.086 0.914 29 H 0.072 0.928 30 H 0.161 0.839 31 H 0.164 0.836 32 H 0.097 0.903 33 H 0.076 0.924 34 H 0.096 0.904 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.098 0.902 38 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -8.512 8.521 -7.642 14.264 hybrid contribution 0.820 -0.959 0.781 1.484 sum -7.692 7.562 -6.861 12.784 Atomic orbital electron populations 1.21746 0.93604 1.01915 1.02348 1.20111 0.96656 0.96418 0.93232 1.21747 1.00994 0.94609 1.02328 1.20974 0.89709 0.90628 0.92866 1.22711 1.08953 1.01746 0.99487 1.17185 0.82511 0.85894 0.83219 1.90993 1.37567 1.25515 1.85868 1.47255 1.38853 1.23953 1.12071 1.22247 0.95844 1.02499 0.79983 1.19206 0.91759 0.89791 0.94735 1.20493 1.39958 0.93055 0.99393 0.91438 1.25050 0.94768 0.96231 0.97493 1.69886 1.46151 1.02730 1.32078 0.86449 0.78200 0.78771 0.84174 1.19553 1.20652 1.20881 1.22973 0.98364 1.04387 0.97464 1.23030 1.03939 0.93597 1.04716 1.24888 0.84138 0.82283 0.99127 1.68121 1.29953 1.32837 0.97217 0.91399 0.92414 0.92901 0.89890 0.92409 0.91397 0.92817 0.83903 0.83605 0.90280 0.92407 0.90355 0.91433 0.91808 0.90201 0.78615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 9.10 37.16 0.34 -1.06 16 2 C -0.05 -0.52 3.17 -91.78 -0.29 -0.81 16 3 C -0.14 -1.46 9.10 37.16 0.34 -1.12 16 4 C 0.18 2.69 5.43 -82.59 -0.45 2.25 16 5 C -0.30 -5.30 9.68 -39.26 -0.38 -5.68 16 6 C 0.51 10.90 5.85 -15.09 -0.09 10.82 16 7 O -0.52 -13.37 15.98 4.94 0.08 -13.29 16 8 N -0.51 -9.83 1.90 -121.11 -0.23 -10.06 16 9 C 0.11 2.53 4.91 -4.05 -0.02 2.51 16 10 C 0.05 1.10 2.31 -155.66 -0.36 0.74 16 11 C -0.49 -12.74 9.02 -34.44 -0.31 -13.05 16 12 H 0.07 1.74 7.84 -52.49 -0.41 1.33 16 13 C 0.07 1.78 5.25 -17.82 -0.09 1.69 16 14 N -0.87 -23.83 10.94 55.43 0.61 -23.23 16 15 Si 0.90 20.04 29.55 -169.99 -5.02 15.02 16 16 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16 17 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 18 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 19 C -0.19 -4.65 9.61 -26.74 -0.26 -4.91 16 20 C -0.22 -4.53 9.52 -26.73 -0.25 -4.78 16 21 C 0.38 5.97 9.17 -90.53 -0.83 5.14 16 22 N -0.56 -8.43 9.93 -10.70 -0.11 -8.54 16 23 H 0.07 0.73 8.05 -51.93 -0.42 0.31 16 24 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 25 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.08 0.86 7.87 -51.93 -0.41 0.45 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.76 8.05 -51.93 -0.42 0.34 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.14 2.27 7.95 -52.48 -0.42 1.86 16 31 H 0.15 3.81 5.31 -51.93 -0.28 3.53 16 32 H 0.08 1.58 8.04 -51.93 -0.42 1.16 16 33 H 0.27 6.92 8.32 -40.82 -0.34 6.58 16 34 H 0.08 1.92 8.14 -51.93 -0.42 1.50 16 35 H 0.07 1.68 5.55 -51.93 -0.29 1.39 16 36 H 0.06 1.21 5.64 -51.93 -0.29 0.92 16 37 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 38 H 0.20 2.42 8.04 -52.49 -0.42 2.00 16 LS Contribution 311.24 15.07 4.69 4.69 Total: -1.00 -29.96 311.24 -8.08 -38.04 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: -5.44 Total: 5.64 kcal Atomic # 6 Polarization: -5.61 SS G_CDS: -2.66 Total: -8.27 kcal Atomic # 7 Polarization: -42.10 SS G_CDS: 0.27 Total: -41.83 kcal Atomic # 8 Polarization: -13.37 SS G_CDS: 0.08 Total: -13.29 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.02 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.96 -8.08 -38.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395569911.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.509 kcal (2) G-P(sol) polarization free energy of solvation -29.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds