Wall clock time and date at job start Mon Mar 30 2020 06:35:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47384 * 2 1 4 4 C 1.50697 * 109.46838 * 120.00280 * 2 1 3 5 5 C 1.36201 * 120.04811 * 120.00044 * 4 2 1 6 6 C 1.41024 * 118.59565 * 179.97438 * 5 4 2 7 7 O 1.21974 * 120.70845 * 180.02562 * 6 5 4 8 8 N 1.35029 * 118.58002 * 0.02562 * 6 5 4 9 9 C 1.46494 * 120.03907 * 180.02562 * 8 6 5 10 10 C 1.52998 * 109.47502 * 92.20474 * 9 8 6 11 11 C 1.50695 * 115.55649 * 174.71047 * 10 9 8 12 12 H 1.07999 * 120.00494 * 219.10934 * 11 10 9 13 13 C 1.37881 * 119.99417 * 39.38690 * 11 10 9 14 14 N 1.31512 * 120.00582 * 10.16895 * 13 11 10 15 15 Si 1.86807 * 119.99572 * 190.16778 * 13 11 10 16 16 H 1.48494 * 109.47351 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.47062 * 120.00110 * 15 13 11 18 18 H 1.48500 * 109.47041 * 239.99797 * 15 13 11 19 19 C 1.53001 * 117.51703 * 320.41631 * 10 9 8 20 20 C 1.52991 * 60.00500 * 107.47722 * 19 10 9 21 21 C 1.34744 * 119.91866 * 0.27259 * 8 6 5 22 22 N 1.30645 * 121.48948 * 359.43171 * 21 8 6 23 23 H 1.08997 * 109.47565 * 300.00165 * 1 2 3 24 24 H 1.09008 * 109.46738 * 60.00168 * 1 2 3 25 25 H 1.08997 * 109.47562 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46873 * 239.99629 * 2 1 3 27 27 H 1.08999 * 109.46975 * 299.99899 * 3 2 1 28 28 H 1.09003 * 109.46557 * 59.99681 * 3 2 1 29 29 H 1.08991 * 109.47417 * 179.97438 * 3 2 1 30 30 H 1.08004 * 120.70247 * 359.97438 * 5 4 2 31 31 H 1.09003 * 109.47660 * 332.20486 * 9 8 6 32 32 H 1.08997 * 109.47313 * 212.20531 * 9 8 6 33 33 H 0.96998 * 120.00367 * 184.98749 * 14 13 11 34 34 H 1.08999 * 117.50258 * 214.97249 * 19 10 9 35 35 H 1.09006 * 117.50086 * 359.97438 * 19 10 9 36 36 H 1.09004 * 117.50019 * 252.51715 * 20 19 10 37 37 H 1.09002 * 117.50096 * 107.48707 * 20 19 10 38 38 H 1.08001 * 119.25628 * 179.70578 * 21 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7105 1.2304 5 6 2.8153 -1.8179 1.1066 6 6 3.2688 -2.4584 2.2783 7 8 3.9723 -3.4526 2.2122 8 7 2.9074 -1.9476 3.4748 9 6 3.3609 -2.5871 4.7124 10 6 4.6679 -1.9384 5.1725 11 6 5.1937 -2.4090 6.5040 12 1 5.6419 -1.7032 7.1877 13 6 5.1078 -3.7417 6.8470 14 7 4.7552 -4.6315 5.9452 15 14 5.4925 -4.2833 8.5930 16 1 5.8609 -3.0986 9.4090 17 1 4.2971 -4.9377 9.1829 18 1 6.6245 -5.2442 8.5751 19 6 5.6932 -1.5741 4.0969 20 6 4.8983 -0.4723 4.8002 21 6 2.1252 -0.8518 3.5292 22 7 1.7098 -0.2554 2.4436 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8901 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.6767 1.9563 -0.8900 28 1 1.6766 1.9562 0.8900 29 1 3.1300 1.4425 0.0005 30 1 3.0833 -2.1976 0.1316 31 1 3.5261 -3.6495 4.5331 32 1 2.6020 -2.4628 5.4848 33 1 4.6244 -5.5575 6.2026 34 1 6.7481 -1.6750 4.3522 35 1 5.4369 -1.7970 3.0611 36 1 4.1187 0.0299 4.2272 37 1 5.4300 0.1518 5.5184 38 1 1.8387 -0.4551 4.4920 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395569911.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:52 Heat of formation + Delta-G solvation = 7.429899 kcal Electronic energy + Delta-G solvation = -20209.179323 eV Core-core repulsion = 17245.139447 eV Total energy + Delta-G solvation = -2964.039876 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.89512 -39.18929 -38.49413 -36.78837 -34.36497 -34.09479 -31.77189 -28.78843 -27.94180 -27.48994 -25.60937 -24.77087 -23.01550 -21.55400 -21.17032 -19.08824 -18.63959 -17.89309 -17.45639 -17.18561 -16.51035 -15.83056 -15.47673 -15.31140 -14.81329 -14.66235 -14.43595 -14.10519 -13.99503 -13.72326 -13.44839 -12.91487 -12.88360 -12.73627 -12.50277 -12.38214 -12.23221 -12.07429 -11.80796 -11.76582 -11.23070 -11.07865 -10.97812 -10.80186 -10.66373 -10.07582 -9.42686 -8.16052 -6.30169 -0.25995 0.89929 1.41975 1.46423 1.57788 1.68281 2.40511 2.66789 2.92421 3.07084 3.46556 3.50412 3.83039 3.98833 4.11208 4.12983 4.29046 4.35436 4.43770 4.51813 4.62118 4.75354 4.83543 4.84043 4.90995 4.96354 5.04236 5.04861 5.15547 5.18937 5.35551 5.39849 5.43242 5.50121 5.62283 5.72917 5.87001 6.24939 6.72109 6.84734 6.97947 7.35710 8.86164 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.038510 B = 0.005262 C = 0.005122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.909709 B = 5319.845729 C = 5465.123788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.047 4.047 3 C -0.135 4.135 4 C 0.198 3.802 5 C -0.325 4.325 6 C 0.499 3.501 7 O -0.585 6.585 8 N -0.509 5.509 9 C 0.127 3.873 10 C 0.025 3.975 11 C -0.508 4.508 12 H 0.066 0.934 13 C 0.025 3.975 14 N -0.904 5.904 15 Si 0.961 3.039 16 H -0.262 1.262 17 H -0.272 1.272 18 H -0.291 1.291 19 C -0.214 4.214 20 C -0.175 4.175 21 C 0.379 3.621 22 N -0.543 5.543 23 H 0.062 0.938 24 H 0.083 0.917 25 H 0.046 0.954 26 H 0.097 0.903 27 H 0.084 0.916 28 H 0.062 0.938 29 H 0.043 0.957 30 H 0.152 0.848 31 H 0.105 0.895 32 H 0.099 0.901 33 H 0.264 0.736 34 H 0.061 0.939 35 H 0.053 0.947 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.272 11.299 -7.369 16.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.066 4.066 3 C -0.193 4.193 4 C 0.076 3.924 5 C -0.350 4.350 6 C 0.300 3.700 7 O -0.467 6.467 8 N -0.222 5.222 9 C 0.006 3.994 10 C 0.024 3.976 11 C -0.545 4.545 12 H 0.085 0.915 13 C -0.176 4.176 14 N -0.541 5.541 15 Si 0.786 3.214 16 H -0.186 1.186 17 H -0.198 1.198 18 H -0.217 1.217 19 C -0.252 4.252 20 C -0.212 4.212 21 C 0.096 3.904 22 N -0.266 5.266 23 H 0.081 0.919 24 H 0.102 0.898 25 H 0.065 0.935 26 H 0.115 0.885 27 H 0.103 0.897 28 H 0.081 0.919 29 H 0.062 0.938 30 H 0.170 0.830 31 H 0.123 0.877 32 H 0.118 0.882 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.072 0.928 36 H 0.106 0.894 37 H 0.109 0.891 38 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -10.251 11.093 -7.524 16.874 hybrid contribution 1.311 -1.647 0.670 2.209 sum -8.940 9.446 -6.854 14.701 Atomic orbital electron populations 1.21728 0.92079 1.01911 1.03431 1.20319 0.97773 0.96838 0.91705 1.21734 1.00375 0.93726 1.03440 1.21566 0.87387 0.89255 0.94204 1.22708 1.10774 1.03046 0.98493 1.17771 0.82090 0.85526 0.84573 1.90948 1.40733 1.28352 1.86715 1.47121 1.39468 1.24900 1.10714 1.21791 0.95935 1.00364 0.81310 1.19329 0.92288 0.92115 0.93864 1.20791 1.40135 0.93331 1.00255 0.91549 1.25791 0.94614 0.96267 1.00931 1.70077 1.47347 1.02865 1.33843 0.85455 0.77790 0.78245 0.79860 1.18608 1.19766 1.21723 1.22855 0.97767 1.07618 0.96986 1.23000 1.02848 0.92131 1.03259 1.25759 0.82760 0.80845 1.00993 1.68292 1.29018 1.32074 0.97218 0.91902 0.89799 0.93467 0.88505 0.89721 0.91928 0.93780 0.83049 0.87747 0.88243 0.92648 0.92003 0.92844 0.89411 0.89116 0.74767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.24 9.10 71.98 0.66 -1.58 16 2 C -0.05 -0.94 3.17 -11.54 -0.04 -0.98 16 3 C -0.14 -2.37 9.10 71.98 0.66 -1.72 16 4 C 0.20 5.55 5.43 41.83 0.23 5.78 16 5 C -0.33 -11.31 9.68 22.48 0.22 -11.10 16 6 C 0.50 21.76 5.85 84.88 0.50 22.26 16 7 O -0.59 -31.79 15.98 -5.23 -0.08 -31.87 16 8 N -0.51 -19.60 1.90 -655.05 -1.24 -20.84 16 9 C 0.13 5.70 4.91 86.38 0.42 6.13 16 10 C 0.03 1.20 2.31 -52.93 -0.12 1.08 16 11 C -0.51 -26.37 9.02 25.60 0.23 -26.14 16 12 H 0.07 3.38 7.84 -2.91 -0.02 3.35 16 13 C 0.02 1.31 5.25 84.66 0.44 1.75 16 14 N -0.90 -50.97 10.94 21.45 0.23 -50.74 16 15 Si 0.96 41.33 29.55 68.60 2.03 43.35 16 16 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 17 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 18 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 19 C -0.21 -10.50 9.61 30.59 0.29 -10.20 16 20 C -0.18 -7.08 9.52 30.59 0.29 -6.79 16 21 C 0.38 10.99 9.17 180.32 1.65 12.65 16 22 N -0.54 -14.93 9.93 -187.75 -1.86 -16.80 16 23 H 0.06 1.13 8.05 -2.39 -0.02 1.11 16 24 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 25 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.10 1.71 7.87 -2.39 -0.02 1.69 16 27 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.06 1.17 8.05 -2.39 -0.02 1.15 16 29 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.15 4.86 7.95 -2.91 -0.02 4.83 16 31 H 0.10 5.71 5.31 -2.39 -0.01 5.69 16 32 H 0.10 3.92 8.04 -2.39 -0.02 3.90 16 33 H 0.26 14.23 8.32 -92.71 -0.77 13.45 16 34 H 0.06 3.15 8.14 -2.39 -0.02 3.13 16 35 H 0.05 2.76 5.55 -2.38 -0.01 2.75 16 36 H 0.09 3.09 5.64 -2.38 -0.01 3.07 16 37 H 0.09 3.49 8.14 -2.39 -0.02 3.47 16 38 H 0.24 4.84 8.04 -2.91 -0.02 4.82 16 Total: -1.00 -67.90 311.24 5.55 -62.35 By element: Atomic # 1 Polarization: 22.37 SS G_CDS: 1.05 Total: 23.42 kcal Atomic # 6 Polarization: -14.30 SS G_CDS: 5.43 Total: -8.87 kcal Atomic # 7 Polarization: -85.51 SS G_CDS: -2.87 Total: -88.38 kcal Atomic # 8 Polarization: -31.79 SS G_CDS: -0.08 Total: -31.87 kcal Atomic # 14 Polarization: 41.33 SS G_CDS: 2.03 Total: 43.35 kcal Total: -67.90 5.55 -62.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395569911.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.780 kcal (2) G-P(sol) polarization free energy of solvation -67.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds