Wall clock time and date at job start Mon Mar 30 2020 06:22:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.42896 * 114.00213 * 2 1 4 4 H 1.08999 * 109.46939 * 337.52136 * 3 2 1 5 5 C 1.52994 * 109.47063 * 97.51921 * 3 2 1 6 6 O 1.42906 * 109.47244 * 295.00016 * 5 3 2 7 7 C 1.35678 * 117.00165 * 179.97438 * 6 5 3 8 8 C 1.39316 * 119.81509 * 359.72646 * 7 6 5 9 9 C 1.36435 * 120.18488 * 179.75632 * 8 7 6 10 10 C 1.40843 * 119.81180 * 0.51873 * 9 8 7 11 11 C 1.41205 * 120.18010 * 179.71739 * 10 9 8 12 12 H 1.08006 * 120.00055 * 204.80477 * 11 10 9 13 13 C 1.39892 * 120.00557 * 24.80233 * 11 10 9 14 14 N 1.30882 * 119.99371 * 15.85283 * 13 11 10 15 15 Si 1.86795 * 120.00383 * 195.85455 * 13 11 10 16 16 H 1.48502 * 109.46878 * 60.00003 * 15 13 11 17 17 H 1.48497 * 109.47204 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47092 * 299.99779 * 15 13 11 19 19 C 1.40834 * 119.63462 * 359.73612 * 10 9 8 20 20 C 1.36432 * 119.81906 * 0.02562 * 19 10 9 21 21 C 1.52991 * 109.47376 * 217.52213 * 3 2 1 22 22 C 1.53001 * 117.50420 * 127.56522 * 21 3 2 23 23 C 1.53000 * 117.50260 * 58.90530 * 21 3 2 24 24 H 1.09004 * 109.46732 * 304.16258 * 1 2 3 25 25 H 1.08996 * 109.46679 * 64.16863 * 1 2 3 26 26 H 1.08998 * 109.46737 * 184.16285 * 1 2 3 27 27 H 1.09007 * 109.47181 * 175.00375 * 5 3 2 28 28 H 1.08996 * 109.47554 * 55.00299 * 5 3 2 29 29 H 1.08004 * 119.90983 * 0.02562 * 8 7 6 30 30 H 1.08000 * 120.09978 * 180.25415 * 9 8 7 31 31 H 0.97004 * 119.99575 * 180.02562 * 14 13 11 32 32 H 1.08004 * 120.08775 * 179.97438 * 19 10 9 33 33 H 1.07997 * 119.91074 * 179.97438 * 20 19 10 34 34 H 1.09003 * 115.55282 * 273.23615 * 21 3 2 35 35 H 1.09008 * 117.49213 * 0.02562 * 22 21 3 36 36 H 1.08994 * 117.49969 * 145.01549 * 22 21 3 37 37 H 1.08996 * 117.50173 * 214.98428 * 23 21 3 38 38 H 1.08999 * 117.49457 * 0.02562 * 23 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.2907 2.0235 -0.3929 5 6 2.3902 1.6945 1.4300 6 8 1.2069 1.8075 2.2233 7 6 1.3692 2.1480 3.5266 8 6 2.6494 2.3635 4.0320 9 6 2.8210 2.7110 5.3401 10 6 1.7000 2.8411 6.1829 11 6 1.8690 3.1946 7.5395 12 1 1.1206 2.9173 8.2671 13 6 3.0059 3.9040 7.9412 14 7 3.7501 4.5067 7.0491 15 14 3.4617 3.9909 9.7506 16 1 3.6932 2.6188 10.2691 17 1 4.6994 4.7956 9.9111 18 1 2.3553 4.6269 10.5098 19 6 0.4097 2.6163 5.6652 20 6 0.2552 2.2742 4.3535 21 6 3.2629 1.3060 -0.8785 22 6 3.3603 2.3743 -1.9694 23 6 3.0952 0.9151 -2.3482 24 1 -0.3633 0.5771 0.8504 25 1 -0.3632 0.4478 -0.9250 26 1 -0.3633 -1.0250 0.0746 27 1 2.9133 2.6508 1.4196 28 1 3.0403 0.9294 1.8543 29 1 3.5082 2.2594 3.3854 30 1 3.8138 2.8818 5.7295 31 1 4.5386 4.9983 7.3276 32 1 -0.4549 2.7136 6.3050 33 1 -0.7336 2.1010 3.9551 34 1 4.1862 1.0091 -0.3811 35 1 2.5320 3.0771 -2.0609 36 1 4.3476 2.7801 -2.1897 37 1 3.9083 0.3615 -2.8177 38 1 2.0924 0.6580 -2.6893 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000400136682.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:49 Heat of formation + Delta-G solvation = -44.334157 kcal Electronic energy + Delta-G solvation = -19143.786085 eV Core-core repulsion = 16145.208800 eV Total energy + Delta-G solvation = -2998.577285 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.136 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.29828 -38.19397 -36.36901 -36.05323 -33.33189 -30.35662 -29.59153 -28.80512 -26.34688 -24.83618 -23.45078 -22.47476 -21.22309 -20.46783 -20.25238 -17.34132 -16.95133 -16.81158 -15.85280 -15.50083 -14.99749 -14.85857 -14.35156 -13.96723 -13.87004 -13.48361 -12.89155 -12.43871 -12.25996 -11.86177 -11.80936 -11.70868 -11.46040 -11.27074 -11.17844 -11.05834 -10.89404 -10.55715 -10.50643 -10.28330 -9.89044 -9.79085 -9.46276 -9.28537 -9.00151 -7.63345 -6.98342 -6.69649 -4.24207 2.79783 2.98704 3.08417 3.11346 3.23813 3.41543 3.83578 3.96413 4.19415 4.64418 4.74016 4.84568 4.91782 5.02187 5.26390 5.42210 5.49374 5.59963 5.65845 5.67944 5.72265 5.81800 5.89261 5.95080 5.96593 6.09049 6.15813 6.29594 6.74201 6.91065 7.08448 7.28718 7.30698 7.43182 7.57693 7.94022 8.01916 8.17400 8.46130 8.67025 8.92109 9.01203 10.24601 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.034999 B = 0.003943 C = 0.003638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.838717 B = 7099.480355 C = 7693.900413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.377 6.377 3 C 0.125 3.875 4 H 0.068 0.932 5 C 0.053 3.947 6 O -0.328 6.328 7 C -0.006 4.006 8 C -0.174 4.174 9 C -0.132 4.132 10 C 0.086 3.914 11 C -0.463 4.463 12 H 0.076 0.924 13 C 0.074 3.926 14 N -0.803 5.803 15 Si 0.909 3.091 16 H -0.265 1.265 17 H -0.279 1.279 18 H -0.266 1.266 19 C -0.196 4.196 20 C -0.115 4.115 21 C -0.154 4.154 22 C -0.175 4.175 23 C -0.163 4.163 24 H 0.058 0.942 25 H 0.033 0.967 26 H 0.080 0.920 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.094 0.906 30 H 0.123 0.877 31 H 0.279 0.721 32 H 0.099 0.901 33 H 0.095 0.905 34 H 0.112 0.888 35 H 0.095 0.905 36 H 0.098 0.902 37 H 0.095 0.905 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.299 -3.927 -13.098 13.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.296 6.296 3 C 0.067 3.933 4 H 0.086 0.914 5 C -0.023 4.023 6 O -0.245 6.245 7 C -0.049 4.049 8 C -0.193 4.193 9 C -0.152 4.152 10 C 0.084 3.916 11 C -0.493 4.493 12 H 0.094 0.906 13 C -0.142 4.142 14 N -0.430 5.430 15 Si 0.733 3.267 16 H -0.189 1.189 17 H -0.204 1.204 18 H -0.191 1.191 19 C -0.216 4.216 20 C -0.134 4.134 21 C -0.172 4.172 22 C -0.211 4.211 23 C -0.200 4.200 24 H 0.076 0.924 25 H 0.051 0.949 26 H 0.099 0.901 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.112 0.888 30 H 0.141 0.859 31 H 0.090 0.910 32 H 0.117 0.883 33 H 0.113 0.887 34 H 0.130 0.870 35 H 0.114 0.886 36 H 0.117 0.883 37 H 0.114 0.886 38 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.160 -3.970 -13.203 13.787 hybrid contribution 0.397 0.436 0.906 1.081 sum 0.237 -3.534 -12.296 12.797 Atomic orbital electron populations 1.22820 0.80888 1.02509 1.00228 1.87875 1.19884 1.26956 1.94903 1.21600 0.93458 0.85398 0.92884 0.91419 1.22964 0.88561 1.00506 0.90314 1.85747 1.31581 1.86818 1.20317 1.18578 0.94123 1.09773 0.82431 1.20629 0.94189 1.07021 0.97463 1.21003 0.99791 1.02096 0.92297 1.17593 0.90433 0.90106 0.93475 1.19444 1.04684 1.31428 0.93792 0.90588 1.25870 0.95402 0.93233 0.99730 1.69822 1.13713 1.23713 1.35707 0.86363 0.78431 0.79218 0.82647 1.18929 1.20430 1.19088 1.20591 0.96723 1.10429 0.93823 1.19583 0.95056 1.05256 0.93490 1.22203 0.98955 1.05270 0.90811 1.23066 1.03379 0.92193 1.02512 1.22820 1.03074 0.97435 0.96717 0.92365 0.94880 0.90144 0.92175 0.92291 0.88783 0.85890 0.90995 0.88273 0.88678 0.87011 0.88613 0.88315 0.88620 0.88717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.68 101.05 1.08 1.49 16 2 O -0.38 -5.73 10.21 -40.09 -0.41 -6.14 16 3 C 0.12 1.77 2.68 -26.74 -0.07 1.70 16 4 H 0.07 0.92 7.48 -51.93 -0.39 0.53 16 5 C 0.05 0.91 4.37 37.15 0.16 1.07 16 6 O -0.33 -6.78 8.83 -23.59 -0.21 -6.99 16 7 C -0.01 -0.14 6.71 -38.78 -0.26 -0.40 16 8 C -0.17 -4.19 8.96 -39.83 -0.36 -4.54 16 9 C -0.13 -3.50 8.64 -39.25 -0.34 -3.83 16 10 C 0.09 2.33 5.58 -106.80 -0.60 1.73 16 11 C -0.46 -12.43 9.05 -37.84 -0.34 -12.77 16 12 H 0.08 1.95 7.89 -52.48 -0.41 1.53 16 13 C 0.07 1.87 5.18 -17.34 -0.09 1.78 16 14 N -0.80 -20.96 10.85 55.54 0.60 -20.36 16 15 Si 0.91 18.86 29.59 -169.99 -5.03 13.83 16 16 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 17 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 18 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 19 C -0.20 -4.89 9.74 -39.25 -0.38 -5.27 16 20 C -0.12 -2.71 9.92 -39.83 -0.40 -3.11 16 21 C -0.15 -1.80 5.40 -90.62 -0.49 -2.29 16 22 C -0.17 -1.67 10.18 -26.70 -0.27 -1.95 16 23 C -0.16 -1.60 10.14 -26.70 -0.27 -1.88 16 24 H 0.06 0.85 6.95 -51.93 -0.36 0.49 16 25 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.06 1.00 7.66 -51.93 -0.40 0.60 16 28 H 0.06 1.04 7.63 -51.93 -0.40 0.64 16 29 H 0.09 2.03 6.27 -52.48 -0.33 1.70 16 30 H 0.12 3.33 6.10 -52.49 -0.32 3.01 16 31 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16 32 H 0.10 2.29 8.06 -52.48 -0.42 1.87 16 33 H 0.10 2.01 8.06 -52.49 -0.42 1.58 16 34 H 0.11 1.28 8.11 -51.93 -0.42 0.86 16 35 H 0.10 0.89 8.05 -51.92 -0.42 0.47 16 36 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 319.29 15.07 4.81 4.81 Total: -1.00 -28.72 319.29 -8.40 -37.11 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -5.54 Total: 5.99 kcal Atomic # 6 Polarization: -25.64 SS G_CDS: -2.62 Total: -28.26 kcal Atomic # 7 Polarization: -20.96 SS G_CDS: 0.60 Total: -20.36 kcal Atomic # 8 Polarization: -12.51 SS G_CDS: -0.62 Total: -13.13 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -5.03 Total: 13.83 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -28.72 -8.40 -37.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400136682.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.223 kcal (2) G-P(sol) polarization free energy of solvation -28.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds