Wall clock time and date at job start Mon Mar 30 2020 06:22:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42904 * 114.00345 * 2 1 4 4 H 1.09002 * 109.46532 * 29.99771 * 3 2 1 5 5 C 1.53002 * 109.47064 * 269.99995 * 3 2 1 6 6 O 1.42905 * 109.46875 * 64.99843 * 5 3 2 7 7 C 1.35681 * 116.99556 * 180.02562 * 6 5 3 8 8 C 1.39310 * 119.81715 * 359.72078 * 7 6 5 9 9 C 1.36435 * 120.18248 * 179.71645 * 8 7 6 10 10 C 1.40837 * 119.81135 * 0.56182 * 9 8 7 11 11 C 1.41217 * 120.17878 * 179.69378 * 10 9 8 12 12 H 1.07996 * 119.99831 * 204.56463 * 11 10 9 13 13 C 1.39886 * 119.99987 * 24.56851 * 11 10 9 14 14 N 1.30878 * 120.00347 * 17.91925 * 13 11 10 15 15 Si 1.86804 * 119.99872 * 197.92492 * 13 11 10 16 16 H 1.48498 * 109.47439 * 89.99791 * 15 13 11 17 17 H 1.48500 * 109.46947 * 210.00182 * 15 13 11 18 18 H 1.48504 * 109.46747 * 329.99626 * 15 13 11 19 19 C 1.40831 * 119.63794 * 359.71654 * 10 9 8 20 20 C 1.36435 * 119.81815 * 0.02562 * 19 10 9 21 21 C 1.52997 * 109.47171 * 150.00156 * 3 2 1 22 22 C 1.52997 * 117.49920 * 8.74196 * 21 3 2 23 23 C 1.53009 * 117.49571 * 300.08393 * 21 3 2 24 24 H 1.08997 * 109.47354 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.46959 * 300.00390 * 1 2 3 26 26 H 1.09001 * 109.46799 * 59.99703 * 1 2 3 27 27 H 1.09000 * 109.47226 * 305.00325 * 5 3 2 28 28 H 1.08993 * 109.47402 * 184.99844 * 5 3 2 29 29 H 1.07999 * 119.90863 * 359.97438 * 8 7 6 30 30 H 1.08003 * 120.09662 * 180.27778 * 9 8 7 31 31 H 0.96997 * 120.00116 * 179.97438 * 14 13 11 32 32 H 1.08009 * 120.08921 * 179.97438 * 19 10 9 33 33 H 1.07997 * 119.91356 * 179.97438 * 20 19 10 34 34 H 1.09000 * 115.55308 * 154.42285 * 21 3 2 35 35 H 1.08996 * 117.50233 * 0.02562 * 22 21 3 36 36 H 1.09008 * 117.49818 * 145.02503 * 22 21 3 37 37 H 1.08998 * 117.49641 * 214.98050 * 23 21 3 38 38 H 1.09000 * 117.49991 * 359.97438 * 23 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3450 1.9993 0.5138 5 6 2.2178 1.7713 -1.4425 6 8 0.9485 1.9227 -2.0814 7 6 0.9549 2.3326 -3.3748 8 6 2.1658 2.5898 -4.0139 9 6 2.1812 2.9968 -5.3160 10 6 0.9680 3.1680 -6.0105 11 6 0.9747 3.5951 -7.3565 12 1 0.1123 4.0988 -7.7675 13 6 2.0983 3.3658 -8.1575 14 7 2.9856 2.4725 -7.8000 15 14 2.3326 4.3346 -9.7374 16 1 3.0989 5.5736 -9.4494 17 1 3.0793 3.5076 -10.7191 18 1 1.0056 4.6927 -10.2998 19 6 -0.2518 2.9113 -5.3552 20 6 -0.2496 2.4999 -4.0543 21 6 3.3590 1.2632 0.7212 22 6 3.9152 -0.1111 1.0991 23 6 3.3638 0.8167 2.1847 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 2.8100 1.0318 -1.9816 28 1 2.7415 2.7272 -1.4439 29 1 3.0950 2.4628 -3.4783 30 1 3.1209 3.1915 -5.8115 31 1 3.7646 2.3133 -8.3557 32 1 -1.1865 3.0406 -5.8807 33 1 -1.1842 2.3031 -3.5502 34 1 4.0736 2.0320 0.4273 35 1 3.3206 -0.9851 0.8336 36 1 4.9959 -0.2464 1.0541 37 1 4.0819 1.2914 2.8533 38 1 2.4061 0.5535 2.6337 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000400136683.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:51 Heat of formation + Delta-G solvation = -44.222532 kcal Electronic energy + Delta-G solvation = -19214.720140 eV Core-core repulsion = 16216.147695 eV Total energy + Delta-G solvation = -2998.572445 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.136 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.34969 -38.22187 -36.30421 -35.88830 -33.34278 -30.38121 -29.59958 -28.81784 -26.34993 -24.86111 -23.55428 -22.37800 -21.19808 -20.37236 -20.16094 -17.35067 -16.99332 -16.60137 -16.08077 -15.63163 -15.02840 -14.59823 -14.35296 -13.96001 -13.90070 -13.26225 -12.88756 -12.47504 -12.33314 -11.92692 -11.76734 -11.58870 -11.51202 -11.21637 -11.13902 -11.09077 -10.96281 -10.60310 -10.42400 -10.14291 -9.85952 -9.77337 -9.45744 -9.26783 -8.98921 -7.64269 -7.00342 -6.71653 -4.24325 2.77973 2.97519 3.08888 3.12302 3.22432 3.56267 3.91781 3.95824 4.02961 4.62689 4.81276 4.87801 4.93297 5.21187 5.30075 5.46271 5.58320 5.61777 5.64587 5.68368 5.72024 5.89134 5.96894 6.03017 6.06454 6.14652 6.23428 6.29336 6.73234 6.90437 7.07918 7.28736 7.29401 7.41937 7.56808 7.92674 8.01168 8.16144 8.45234 8.66210 8.91185 9.00331 10.23087 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.035999 B = 0.003954 C = 0.003684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.618882 B = 7078.962961 C = 7598.704404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.379 6.379 3 C 0.125 3.875 4 H 0.070 0.930 5 C 0.050 3.950 6 O -0.328 6.328 7 C -0.008 4.008 8 C -0.173 4.173 9 C -0.134 4.134 10 C 0.087 3.913 11 C -0.464 4.464 12 H 0.077 0.923 13 C 0.075 3.925 14 N -0.800 5.800 15 Si 0.907 3.093 16 H -0.269 1.269 17 H -0.279 1.279 18 H -0.263 1.263 19 C -0.197 4.197 20 C -0.114 4.114 21 C -0.158 4.158 22 C -0.162 4.162 23 C -0.174 4.174 24 H 0.079 0.921 25 H 0.034 0.966 26 H 0.063 0.937 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.094 0.906 30 H 0.121 0.879 31 H 0.279 0.721 32 H 0.099 0.901 33 H 0.095 0.905 34 H 0.116 0.884 35 H 0.107 0.893 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.211 -2.146 13.340 13.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.298 6.298 3 C 0.067 3.933 4 H 0.088 0.912 5 C -0.026 4.026 6 O -0.245 6.245 7 C -0.051 4.051 8 C -0.192 4.192 9 C -0.153 4.153 10 C 0.085 3.915 11 C -0.494 4.494 12 H 0.095 0.905 13 C -0.142 4.142 14 N -0.426 5.426 15 Si 0.732 3.268 16 H -0.194 1.194 17 H -0.204 1.204 18 H -0.187 1.187 19 C -0.216 4.216 20 C -0.133 4.133 21 C -0.176 4.176 22 C -0.199 4.199 23 C -0.211 4.211 24 H 0.097 0.903 25 H 0.052 0.948 26 H 0.081 0.919 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.112 0.888 30 H 0.139 0.861 31 H 0.090 0.910 32 H 0.117 0.883 33 H 0.113 0.887 34 H 0.134 0.866 35 H 0.125 0.875 36 H 0.109 0.891 37 H 0.111 0.889 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 1.368 -2.475 13.359 13.655 hybrid contribution 0.312 0.632 -0.915 1.154 sum 1.680 -1.844 12.445 12.692 Atomic orbital electron populations 1.22845 0.80667 1.02200 1.00880 1.87827 1.20143 1.26904 1.94954 1.21493 0.93293 0.85153 0.93409 0.91250 1.23010 0.86737 1.00121 0.92745 1.85752 1.29161 1.84829 1.24721 1.18569 0.94279 1.09049 0.83170 1.20615 0.94806 1.06788 0.96971 1.20947 0.99199 1.03111 0.92057 1.17594 0.90672 0.90099 0.93150 1.19477 1.00720 1.33936 0.95294 0.90496 1.25871 0.95052 0.93535 0.99709 1.69841 1.09996 1.25020 1.37752 0.86330 0.79402 0.80252 0.80814 1.19378 1.20405 1.18672 1.20586 0.97496 1.09135 0.94407 1.19588 0.94068 1.04872 0.94766 1.22270 0.97584 1.00247 0.97544 1.22883 1.00413 0.94419 1.02210 1.22922 1.02977 1.04230 0.90931 0.90283 0.94780 0.91879 0.92149 0.92465 0.88795 0.86143 0.90999 0.88270 0.88675 0.86593 0.87495 0.89087 0.88877 0.88836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.71 101.05 1.08 1.48 16 2 O -0.38 -5.63 8.70 -40.08 -0.35 -5.98 16 3 C 0.12 1.74 2.85 -26.73 -0.08 1.67 16 4 H 0.07 0.94 7.79 -51.93 -0.40 0.53 16 5 C 0.05 0.85 4.38 37.16 0.16 1.01 16 6 O -0.33 -6.68 8.25 -23.60 -0.19 -6.88 16 7 C -0.01 -0.18 6.71 -38.78 -0.26 -0.44 16 8 C -0.17 -4.14 8.96 -39.83 -0.36 -4.49 16 9 C -0.13 -3.52 8.64 -39.25 -0.34 -3.86 16 10 C 0.09 2.35 5.57 -106.80 -0.60 1.75 16 11 C -0.46 -12.42 9.04 -37.83 -0.34 -12.76 16 12 H 0.08 1.98 7.91 -52.49 -0.41 1.56 16 13 C 0.07 1.90 5.13 -17.34 -0.09 1.81 16 14 N -0.80 -20.91 10.96 55.54 0.61 -20.31 16 15 Si 0.91 18.82 29.60 -169.99 -5.03 13.79 16 16 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 17 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 18 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 19 C -0.20 -4.89 9.74 -39.25 -0.38 -5.27 16 20 C -0.11 -2.67 9.92 -39.83 -0.40 -3.07 16 21 C -0.16 -1.84 5.71 -90.62 -0.52 -2.36 16 22 C -0.16 -1.78 9.88 -26.69 -0.26 -2.04 16 23 C -0.17 -1.72 10.19 -26.69 -0.27 -1.99 16 24 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 25 H 0.03 0.38 8.08 -51.93 -0.42 -0.04 16 26 H 0.06 0.96 6.40 -51.93 -0.33 0.63 16 27 H 0.06 1.08 7.66 -51.93 -0.40 0.68 16 28 H 0.06 0.92 7.63 -51.93 -0.40 0.52 16 29 H 0.09 2.02 6.27 -52.49 -0.33 1.69 16 30 H 0.12 3.25 6.16 -52.48 -0.32 2.93 16 31 H 0.28 6.65 8.30 -40.82 -0.34 6.31 16 32 H 0.10 2.29 8.06 -52.48 -0.42 1.86 16 33 H 0.10 1.99 8.06 -52.49 -0.42 1.57 16 34 H 0.12 1.23 8.11 -51.93 -0.42 0.80 16 35 H 0.11 1.30 7.06 -51.93 -0.37 0.93 16 36 H 0.09 0.87 8.14 -51.92 -0.42 0.45 16 37 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 316.32 15.07 4.77 4.77 Total: -1.00 -28.40 316.32 -8.32 -36.72 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -5.48 Total: 6.44 kcal Atomic # 6 Polarization: -25.90 SS G_CDS: -2.65 Total: -28.55 kcal Atomic # 7 Polarization: -20.91 SS G_CDS: 0.61 Total: -20.31 kcal Atomic # 8 Polarization: -12.31 SS G_CDS: -0.54 Total: -12.86 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -5.03 Total: 13.79 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -28.40 -8.32 -36.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400136683.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.502 kcal (2) G-P(sol) polarization free energy of solvation -28.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds