Wall clock time and date at job start Mon Mar 30 2020 06:22:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42904 * 114.00345 * 2 1 4 4 H 1.09002 * 109.46532 * 29.99771 * 3 2 1 5 5 C 1.53002 * 109.47064 * 269.99995 * 3 2 1 6 6 O 1.42905 * 109.46875 * 64.99843 * 5 3 2 7 7 C 1.35681 * 116.99556 * 180.02562 * 6 5 3 8 8 C 1.39310 * 119.81715 * 359.72078 * 7 6 5 9 9 C 1.36435 * 120.18248 * 179.71645 * 8 7 6 10 10 C 1.40837 * 119.81135 * 0.56182 * 9 8 7 11 11 C 1.41217 * 120.17878 * 179.69378 * 10 9 8 12 12 H 1.07996 * 119.99831 * 204.56463 * 11 10 9 13 13 C 1.39886 * 119.99987 * 24.56851 * 11 10 9 14 14 N 1.30878 * 120.00347 * 17.91925 * 13 11 10 15 15 Si 1.86804 * 119.99872 * 197.92492 * 13 11 10 16 16 H 1.48498 * 109.47439 * 89.99791 * 15 13 11 17 17 H 1.48500 * 109.46947 * 210.00182 * 15 13 11 18 18 H 1.48504 * 109.46747 * 329.99626 * 15 13 11 19 19 C 1.40831 * 119.63794 * 359.71654 * 10 9 8 20 20 C 1.36435 * 119.81815 * 0.02562 * 19 10 9 21 21 C 1.52997 * 109.47171 * 150.00156 * 3 2 1 22 22 C 1.52997 * 117.49920 * 8.74196 * 21 3 2 23 23 C 1.53009 * 117.49571 * 300.08393 * 21 3 2 24 24 H 1.08997 * 109.47354 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.46959 * 300.00390 * 1 2 3 26 26 H 1.09001 * 109.46799 * 59.99703 * 1 2 3 27 27 H 1.09000 * 109.47226 * 305.00325 * 5 3 2 28 28 H 1.08993 * 109.47402 * 184.99844 * 5 3 2 29 29 H 1.07999 * 119.90863 * 359.97438 * 8 7 6 30 30 H 1.08003 * 120.09662 * 180.27778 * 9 8 7 31 31 H 0.96997 * 120.00116 * 179.97438 * 14 13 11 32 32 H 1.08009 * 120.08921 * 179.97438 * 19 10 9 33 33 H 1.07997 * 119.91356 * 179.97438 * 20 19 10 34 34 H 1.09000 * 115.55308 * 154.42285 * 21 3 2 35 35 H 1.08996 * 117.50233 * 0.02562 * 22 21 3 36 36 H 1.09008 * 117.49818 * 145.02503 * 22 21 3 37 37 H 1.08998 * 117.49641 * 214.98050 * 23 21 3 38 38 H 1.09000 * 117.49991 * 359.97438 * 23 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3450 1.9993 0.5138 5 6 2.2178 1.7713 -1.4425 6 8 0.9485 1.9227 -2.0814 7 6 0.9549 2.3326 -3.3748 8 6 2.1658 2.5898 -4.0139 9 6 2.1812 2.9968 -5.3160 10 6 0.9680 3.1680 -6.0105 11 6 0.9747 3.5951 -7.3565 12 1 0.1123 4.0988 -7.7675 13 6 2.0983 3.3658 -8.1575 14 7 2.9856 2.4725 -7.8000 15 14 2.3326 4.3346 -9.7374 16 1 3.0989 5.5736 -9.4494 17 1 3.0793 3.5076 -10.7191 18 1 1.0056 4.6927 -10.2998 19 6 -0.2518 2.9113 -5.3552 20 6 -0.2496 2.4999 -4.0543 21 6 3.3590 1.2632 0.7212 22 6 3.9152 -0.1111 1.0991 23 6 3.3638 0.8167 2.1847 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 2.8100 1.0318 -1.9816 28 1 2.7415 2.7272 -1.4439 29 1 3.0950 2.4628 -3.4783 30 1 3.1209 3.1915 -5.8115 31 1 3.7646 2.3133 -8.3557 32 1 -1.1865 3.0406 -5.8807 33 1 -1.1842 2.3031 -3.5502 34 1 4.0736 2.0320 0.4273 35 1 3.3206 -0.9851 0.8336 36 1 4.9959 -0.2464 1.0541 37 1 4.0819 1.2914 2.8533 38 1 2.4061 0.5535 2.6337 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000400136683.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:51 Heat of formation + Delta-G solvation = -58.424163 kcal Electronic energy + Delta-G solvation = -19215.335969 eV Core-core repulsion = 16216.147695 eV Total energy + Delta-G solvation = -2999.188274 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.136 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.78931 -39.64260 -37.97501 -36.91632 -35.23408 -31.84444 -31.49528 -30.52278 -27.51103 -26.66551 -24.89858 -23.19423 -23.00618 -22.09324 -21.29828 -19.27833 -18.63347 -17.79401 -17.35303 -17.04858 -16.55025 -15.92874 -15.79794 -15.45782 -15.38684 -14.76779 -14.24064 -14.12817 -13.91252 -13.69352 -13.39175 -13.00524 -12.79587 -12.75180 -12.47746 -12.33298 -12.29357 -12.10579 -11.67469 -11.59277 -11.32493 -11.22530 -11.02789 -10.87621 -10.46383 -9.58050 -8.92346 -8.60698 -6.23668 0.92795 1.03451 1.39308 1.52226 1.52556 2.22424 2.43130 2.68832 2.72645 3.03441 3.69318 3.81366 3.87791 3.99509 4.19258 4.22126 4.28491 4.33951 4.42340 4.47743 4.59696 4.66486 4.72394 4.84435 4.90012 4.94910 5.02231 5.04418 5.14564 5.24974 5.36174 5.37734 5.50491 5.65470 5.97056 6.05453 6.20339 6.22038 6.54548 6.77297 6.94383 7.08263 8.36225 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.035999 B = 0.003954 C = 0.003684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.618882 B = 7078.962961 C = 7598.704404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.392 6.392 3 C 0.129 3.871 4 H 0.077 0.923 5 C 0.044 3.956 6 O -0.328 6.328 7 C -0.001 4.001 8 C -0.177 4.177 9 C -0.156 4.156 10 C 0.055 3.945 11 C -0.500 4.500 12 H 0.077 0.923 13 C 0.034 3.966 14 N -0.832 5.832 15 Si 0.983 3.017 16 H -0.263 1.263 17 H -0.269 1.269 18 H -0.258 1.258 19 C -0.205 4.205 20 C -0.120 4.120 21 C -0.172 4.172 22 C -0.168 4.168 23 C -0.155 4.155 24 H 0.095 0.905 25 H 0.054 0.946 26 H 0.039 0.961 27 H 0.048 0.952 28 H 0.067 0.933 29 H 0.113 0.887 30 H 0.106 0.894 31 H 0.287 0.713 32 H 0.111 0.889 33 H 0.121 0.879 34 H 0.127 0.873 35 H 0.091 0.909 36 H 0.105 0.895 37 H 0.115 0.885 38 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.445 -1.938 14.490 14.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.311 6.311 3 C 0.071 3.929 4 H 0.095 0.905 5 C -0.032 4.032 6 O -0.244 6.244 7 C -0.045 4.045 8 C -0.196 4.196 9 C -0.175 4.175 10 C 0.053 3.947 11 C -0.530 4.530 12 H 0.095 0.905 13 C -0.180 4.180 14 N -0.459 5.459 15 Si 0.804 3.196 16 H -0.187 1.187 17 H -0.194 1.194 18 H -0.182 1.182 19 C -0.224 4.224 20 C -0.139 4.139 21 C -0.190 4.190 22 C -0.205 4.205 23 C -0.192 4.192 24 H 0.113 0.887 25 H 0.072 0.928 26 H 0.058 0.942 27 H 0.066 0.934 28 H 0.085 0.915 29 H 0.131 0.869 30 H 0.124 0.876 31 H 0.097 0.903 32 H 0.129 0.871 33 H 0.139 0.861 34 H 0.145 0.855 35 H 0.110 0.890 36 H 0.123 0.877 37 H 0.133 0.867 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 1.594 -2.278 14.536 14.799 hybrid contribution 0.213 0.484 -1.118 1.236 sum 1.807 -1.794 13.418 13.658 Atomic orbital electron populations 1.22933 0.79950 1.03278 1.00653 1.87830 1.21029 1.27402 1.94843 1.21530 0.94898 0.84966 0.91478 0.90528 1.23320 0.85319 1.00419 0.94140 1.85786 1.31246 1.84231 1.23127 1.18720 0.93956 1.07499 0.84344 1.20804 0.96172 1.06238 0.96369 1.20910 0.98593 1.04914 0.93102 1.17954 0.91638 0.91212 0.93933 1.19738 1.01906 1.35455 0.95906 0.90519 1.26736 0.94185 0.93942 1.03131 1.69896 1.10598 1.26035 1.39396 0.85193 0.79474 0.78632 0.76326 1.18743 1.19396 1.18167 1.20805 0.97413 1.09021 0.95192 1.19883 0.95383 1.04138 0.94448 1.22298 0.96592 1.01122 0.98966 1.22912 1.01061 0.93565 1.02981 1.23007 1.03353 1.02717 0.90102 0.88707 0.92756 0.94237 0.93407 0.91461 0.86869 0.87637 0.90265 0.87136 0.86104 0.85539 0.89041 0.87710 0.86712 0.88822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 10.71 113.37 1.21 1.90 16 2 O -0.39 -11.10 8.70 -144.34 -1.26 -12.35 16 3 C 0.13 3.41 2.85 30.59 0.09 3.50 16 4 H 0.08 1.91 7.79 -2.39 -0.02 1.89 16 5 C 0.04 1.44 4.38 71.98 0.31 1.76 16 6 O -0.33 -13.04 8.25 -85.35 -0.70 -13.74 16 7 C 0.00 -0.07 6.71 22.79 0.15 0.09 16 8 C -0.18 -8.53 8.96 22.11 0.20 -8.34 16 9 C -0.16 -8.41 8.64 22.48 0.19 -8.22 16 10 C 0.05 3.03 5.57 -21.28 -0.12 2.91 16 11 C -0.50 -27.41 9.04 23.40 0.21 -27.20 16 12 H 0.08 4.03 7.91 -2.91 -0.02 4.01 16 13 C 0.03 1.73 5.13 85.23 0.44 2.17 16 14 N -0.83 -44.39 10.96 21.82 0.24 -44.15 16 15 Si 0.98 38.69 29.60 68.60 2.03 40.72 16 16 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 17 H -0.27 -10.09 7.11 99.48 0.71 -9.38 16 18 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 19 C -0.20 -10.28 9.74 22.48 0.22 -10.06 16 20 C -0.12 -5.56 9.92 22.11 0.22 -5.34 16 21 C -0.17 -3.62 5.71 -10.79 -0.06 -3.68 16 22 C -0.17 -3.35 9.88 30.62 0.30 -3.05 16 23 C -0.16 -2.63 10.19 30.62 0.31 -2.31 16 24 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 25 H 0.05 1.11 8.08 -2.39 -0.02 1.09 16 26 H 0.04 1.16 6.40 -2.39 -0.02 1.15 16 27 H 0.05 1.69 7.66 -2.39 -0.02 1.67 16 28 H 0.07 2.07 7.63 -2.39 -0.02 2.05 16 29 H 0.11 4.87 6.27 -2.91 -0.02 4.85 16 30 H 0.11 5.92 6.16 -2.91 -0.02 5.91 16 31 H 0.29 13.83 8.30 -92.71 -0.77 13.06 16 32 H 0.11 5.14 8.06 -2.91 -0.02 5.11 16 33 H 0.12 4.88 8.06 -2.91 -0.02 4.86 16 34 H 0.13 2.38 8.11 -2.39 -0.02 2.36 16 35 H 0.09 2.12 7.06 -2.39 -0.02 2.11 16 36 H 0.10 1.77 8.14 -2.38 -0.02 1.75 16 37 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -61.40 316.32 5.03 -56.36 By element: Atomic # 1 Polarization: 28.00 SS G_CDS: 1.04 Total: 29.04 kcal Atomic # 6 Polarization: -59.56 SS G_CDS: 3.68 Total: -55.88 kcal Atomic # 7 Polarization: -44.39 SS G_CDS: 0.24 Total: -44.15 kcal Atomic # 8 Polarization: -24.14 SS G_CDS: -1.96 Total: -26.10 kcal Atomic # 14 Polarization: 38.69 SS G_CDS: 2.03 Total: 40.72 kcal Total: -61.40 5.03 -56.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400136683.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.060 kcal (2) G-P(sol) polarization free energy of solvation -61.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds