Wall clock time and date at job start Mon Mar 30 2020 06:36:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.46746 * 2 1 4 4 C 1.53001 * 109.46697 * 119.99217 * 2 1 3 5 5 C 1.53004 * 109.46901 * 65.00673 * 4 2 1 6 6 C 1.50698 * 109.46941 * 179.97438 * 5 4 2 7 7 C 1.38852 * 120.33799 * 90.00272 * 6 5 4 8 8 C 1.38344 * 118.49895 * 180.02562 * 7 6 5 9 9 C 1.39166 * 119.09317 * 359.97438 * 8 7 6 10 10 N 1.39081 * 119.69893 * 179.97438 * 9 8 7 11 11 C 1.34777 * 119.99605 * 174.91786 * 10 9 8 12 12 O 1.21721 * 120.00575 * 5.08151 * 11 10 9 13 13 C 1.46207 * 120.00095 * 185.08798 * 11 10 9 14 14 H 1.07998 * 119.99696 * 359.97438 * 13 11 10 15 15 C 1.40114 * 120.00112 * 179.97438 * 13 11 10 16 16 N 1.30643 * 120.00130 * 359.97438 * 15 13 11 17 17 Si 1.86800 * 119.99773 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.47597 * 359.97438 * 17 15 13 19 19 H 1.48504 * 109.47147 * 120.00251 * 17 15 13 20 20 H 1.48506 * 109.47140 * 239.99656 * 17 15 13 21 21 N 1.32423 * 120.59322 * 0.02562 * 9 8 7 22 22 C 1.31899 * 121.62889 * 359.97438 * 21 9 8 23 23 H 1.09004 * 109.46971 * 60.00649 * 1 2 3 24 24 H 1.09007 * 109.47250 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47856 * 300.00589 * 1 2 3 26 26 H 1.08992 * 109.47274 * 239.99818 * 2 1 3 27 27 H 1.09004 * 109.46515 * 179.97438 * 3 2 1 28 28 H 1.08994 * 109.46860 * 299.99396 * 3 2 1 29 29 H 1.09000 * 109.47187 * 59.99616 * 3 2 1 30 30 H 1.08996 * 109.47821 * 305.00566 * 4 2 1 31 31 H 1.08997 * 109.46876 * 185.00010 * 4 2 1 32 32 H 1.09004 * 109.46812 * 59.99629 * 5 4 2 33 33 H 1.08997 * 109.46814 * 299.99375 * 5 4 2 34 34 H 1.07997 * 120.75348 * 359.97438 * 7 6 5 35 35 H 1.07998 * 120.44826 * 179.72639 * 8 7 6 36 36 H 0.97001 * 120.00433 * 354.90861 * 10 9 8 37 37 H 0.96998 * 119.99345 * 180.02562 * 16 15 13 38 38 H 1.07995 * 119.57222 * 180.02562 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7211 1.2494 5 6 1.6352 -2.1954 1.1881 6 6 2.1379 -2.9058 2.4184 7 6 1.3481 -2.9789 3.5580 8 6 1.8475 -3.6398 4.6660 9 6 3.1171 -4.2060 4.6009 10 7 3.6318 -4.8729 5.7076 11 6 4.8156 -5.5111 5.6193 12 8 5.4780 -5.4270 4.6015 13 6 5.3043 -6.3045 6.7459 14 1 4.7168 -6.3788 7.6491 15 6 6.5347 -6.9684 6.6539 16 7 7.2452 -6.8788 5.5612 17 14 7.1586 -7.9826 8.0932 18 1 6.1746 -7.9238 9.2037 19 1 7.3378 -9.3930 7.6641 20 1 8.4599 -7.4370 8.5561 21 7 3.8398 -4.1147 3.4950 22 6 3.3893 -3.4908 2.4238 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3635 0.5139 0.8899 26 1 1.8933 -0.5138 -0.8899 27 1 3.1299 1.4426 0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6765 1.9564 0.8899 30 1 1.6052 -0.2616 2.1370 31 1 3.1262 -0.6442 1.2953 32 1 2.0699 -2.6549 0.3004 33 1 0.5489 -2.2723 1.1422 34 1 0.3663 -2.5294 3.5793 35 1 1.2617 -3.7118 5.5705 36 1 3.1389 -4.8786 6.5430 37 1 8.0968 -7.3388 5.4975 38 1 4.0068 -3.4366 1.5395 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000456774079.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:40 Heat of formation + Delta-G solvation = -20.108846 kcal Electronic energy + Delta-G solvation = -18816.214285 eV Core-core repulsion = 15850.980240 eV Total energy + Delta-G solvation = -2965.234046 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.83773 -37.53672 -36.65129 -33.80114 -32.47216 -32.22219 -30.95516 -28.06900 -27.31066 -26.25473 -23.77468 -23.27129 -21.25873 -20.04211 -19.84048 -17.73041 -16.54574 -15.81380 -15.33750 -15.18577 -14.92866 -14.16274 -14.01934 -13.87178 -13.67620 -13.56498 -12.76631 -12.50447 -12.44618 -12.41070 -12.20702 -11.79376 -11.66753 -11.30425 -11.23203 -11.08782 -10.81004 -10.62726 -10.60041 -10.51151 -10.26750 -9.46487 -9.20091 -8.84820 -8.70482 -7.42307 -7.14985 -6.25857 -4.75051 1.80129 1.97111 3.09327 3.16937 3.21458 3.99251 4.32591 4.37172 4.64488 4.74162 4.79113 4.85636 5.10877 5.24166 5.29038 5.42882 5.45579 5.55765 5.62063 5.63036 5.70233 5.73238 5.78459 5.83503 5.88877 6.01843 6.07989 6.11350 6.22917 6.33721 6.36910 6.50025 6.78710 7.14632 7.33828 7.58444 7.97361 8.16474 8.74588 8.91380 9.36953 10.49873 10.66943 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.050958 B = 0.003414 C = 0.003292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.336747 B = 8200.409776 C = 8504.216361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.099 4.099 3 C -0.148 4.148 4 C -0.110 4.110 5 C -0.062 4.062 6 C -0.208 4.208 7 C -0.045 4.045 8 C -0.240 4.240 9 C 0.388 3.612 10 N -0.674 5.674 11 C 0.530 3.470 12 O -0.510 6.510 13 C -0.541 4.541 14 H 0.071 0.929 15 C 0.085 3.915 16 N -0.760 5.760 17 Si 0.912 3.088 18 H -0.263 1.263 19 H -0.275 1.275 20 H -0.275 1.275 21 N -0.470 5.470 22 C 0.140 3.860 23 H 0.049 0.951 24 H 0.058 0.942 25 H 0.053 0.947 26 H 0.069 0.931 27 H 0.054 0.946 28 H 0.051 0.949 29 H 0.053 0.947 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.122 0.878 35 H 0.124 0.876 36 H 0.398 0.602 37 H 0.271 0.729 38 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.526 10.981 -6.450 17.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.117 4.117 3 C -0.205 4.205 4 C -0.148 4.148 5 C -0.100 4.100 6 C -0.213 4.213 7 C -0.070 4.070 8 C -0.265 4.265 9 C 0.154 3.846 10 N -0.317 5.317 11 C 0.334 3.666 12 O -0.385 6.385 13 C -0.577 4.577 14 H 0.089 0.911 15 C -0.135 4.135 16 N -0.388 5.388 17 Si 0.737 3.263 18 H -0.187 1.187 19 H -0.200 1.200 20 H -0.200 1.200 21 N -0.184 5.184 22 C -0.021 4.021 23 H 0.069 0.931 24 H 0.077 0.923 25 H 0.072 0.928 26 H 0.087 0.913 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.140 0.860 35 H 0.142 0.858 36 H 0.232 0.768 37 H 0.082 0.918 38 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -10.910 10.480 -7.183 16.747 hybrid contribution -0.834 -0.119 1.241 1.500 sum -11.744 10.361 -5.942 16.751 Atomic orbital electron populations 1.21895 0.95505 1.01844 1.01352 1.21154 0.95748 0.96070 0.98747 1.21845 1.01067 0.96172 1.01420 1.21677 1.01165 0.94676 0.97248 1.20376 1.00405 0.94196 0.95043 1.20550 0.97460 1.06233 0.97066 1.20985 0.98522 0.95648 0.91893 1.21432 0.96914 1.07405 1.00777 1.18923 0.88315 0.89147 0.88238 1.44614 1.24410 1.52145 1.10505 1.18571 0.78372 0.79963 0.89742 1.90741 1.54144 1.62060 1.31559 1.20881 1.05299 1.31219 1.00296 0.91103 1.25725 0.95996 0.95485 0.96328 1.70008 1.10439 1.33095 1.25291 0.86237 0.79131 0.79525 0.81427 1.18712 1.20048 1.20048 1.68027 1.34179 1.17414 0.98776 1.22585 0.92286 0.91348 0.95883 0.93150 0.92345 0.92837 0.91257 0.92676 0.93011 0.92823 0.92060 0.91799 0.91502 0.91538 0.85990 0.85777 0.76820 0.91842 0.83840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 8.95 37.16 0.33 -0.84 16 2 C -0.10 -0.87 2.92 -90.62 -0.26 -1.13 16 3 C -0.15 -1.22 9.19 37.16 0.34 -0.88 16 4 C -0.11 -1.16 4.66 -26.73 -0.12 -1.28 16 5 C -0.06 -0.71 5.12 -27.88 -0.14 -0.85 16 6 C -0.21 -3.17 5.15 -104.43 -0.54 -3.71 16 7 C -0.04 -0.66 9.85 -39.32 -0.39 -1.05 16 8 C -0.24 -4.09 9.94 -39.20 -0.39 -4.48 16 9 C 0.39 8.54 7.42 -154.91 -1.15 7.39 16 10 N -0.67 -15.70 5.37 -12.77 -0.07 -15.77 16 11 C 0.53 15.27 7.70 -13.06 -0.10 15.17 16 12 O -0.51 -16.70 13.27 5.17 0.07 -16.63 16 13 C -0.54 -15.08 9.54 -35.68 -0.34 -15.42 16 14 H 0.07 1.78 7.85 -52.49 -0.41 1.37 16 15 C 0.09 2.35 5.50 -17.35 -0.10 2.26 16 16 N -0.76 -22.63 11.83 55.55 0.66 -21.98 16 17 Si 0.91 19.85 29.56 -169.99 -5.02 14.82 16 18 H -0.26 -5.50 7.11 56.52 0.40 -5.09 16 19 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 20 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 21 N -0.47 -11.22 7.88 -12.39 -0.10 -11.32 16 22 C 0.14 2.63 10.85 -17.56 -0.19 2.44 16 23 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 24 H 0.06 0.46 6.56 -51.92 -0.34 0.12 16 25 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.07 0.73 8.09 -51.93 -0.42 0.31 16 33 H 0.07 0.67 6.52 -51.93 -0.34 0.34 16 34 H 0.12 1.41 8.06 -52.49 -0.42 0.98 16 35 H 0.12 1.75 8.06 -52.49 -0.42 1.32 16 36 H 0.40 7.66 8.68 -40.82 -0.35 7.30 16 37 H 0.27 7.27 8.29 -40.82 -0.34 6.94 16 38 H 0.14 2.41 8.06 -52.49 -0.42 1.99 16 LS Contribution 321.32 15.07 4.84 4.84 Total: -1.00 -34.79 321.32 -8.32 -43.11 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -5.65 Total: 5.29 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: -3.05 Total: -2.38 kcal Atomic # 7 Polarization: -49.56 SS G_CDS: 0.49 Total: -49.07 kcal Atomic # 8 Polarization: -16.70 SS G_CDS: 0.07 Total: -16.63 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.02 Total: 14.82 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -34.79 -8.32 -43.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456774079.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.005 kcal (2) G-P(sol) polarization free energy of solvation -34.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds