Wall clock time and date at job start Mon Mar 30 2020 06:36:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.46746 * 2 1 4 4 C 1.53001 * 109.46697 * 119.99217 * 2 1 3 5 5 C 1.53004 * 109.46901 * 65.00673 * 4 2 1 6 6 C 1.50698 * 109.46941 * 179.97438 * 5 4 2 7 7 C 1.38852 * 120.33799 * 90.00272 * 6 5 4 8 8 C 1.38344 * 118.49895 * 180.02562 * 7 6 5 9 9 C 1.39166 * 119.09317 * 359.97438 * 8 7 6 10 10 N 1.39081 * 119.69893 * 179.97438 * 9 8 7 11 11 C 1.34777 * 119.99605 * 174.91786 * 10 9 8 12 12 O 1.21721 * 120.00575 * 5.08151 * 11 10 9 13 13 C 1.46207 * 120.00095 * 185.08798 * 11 10 9 14 14 H 1.07998 * 119.99696 * 359.97438 * 13 11 10 15 15 C 1.40114 * 120.00112 * 179.97438 * 13 11 10 16 16 N 1.30643 * 120.00130 * 359.97438 * 15 13 11 17 17 Si 1.86800 * 119.99773 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.47597 * 359.97438 * 17 15 13 19 19 H 1.48504 * 109.47147 * 120.00251 * 17 15 13 20 20 H 1.48506 * 109.47140 * 239.99656 * 17 15 13 21 21 N 1.32423 * 120.59322 * 0.02562 * 9 8 7 22 22 C 1.31899 * 121.62889 * 359.97438 * 21 9 8 23 23 H 1.09004 * 109.46971 * 60.00649 * 1 2 3 24 24 H 1.09007 * 109.47250 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47856 * 300.00589 * 1 2 3 26 26 H 1.08992 * 109.47274 * 239.99818 * 2 1 3 27 27 H 1.09004 * 109.46515 * 179.97438 * 3 2 1 28 28 H 1.08994 * 109.46860 * 299.99396 * 3 2 1 29 29 H 1.09000 * 109.47187 * 59.99616 * 3 2 1 30 30 H 1.08996 * 109.47821 * 305.00566 * 4 2 1 31 31 H 1.08997 * 109.46876 * 185.00010 * 4 2 1 32 32 H 1.09004 * 109.46812 * 59.99629 * 5 4 2 33 33 H 1.08997 * 109.46814 * 299.99375 * 5 4 2 34 34 H 1.07997 * 120.75348 * 359.97438 * 7 6 5 35 35 H 1.07998 * 120.44826 * 179.72639 * 8 7 6 36 36 H 0.97001 * 120.00433 * 354.90861 * 10 9 8 37 37 H 0.96998 * 119.99345 * 180.02562 * 16 15 13 38 38 H 1.07995 * 119.57222 * 180.02562 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7211 1.2494 5 6 1.6352 -2.1954 1.1881 6 6 2.1379 -2.9058 2.4184 7 6 1.3481 -2.9789 3.5580 8 6 1.8475 -3.6398 4.6660 9 6 3.1171 -4.2060 4.6009 10 7 3.6318 -4.8729 5.7076 11 6 4.8156 -5.5111 5.6193 12 8 5.4780 -5.4270 4.6015 13 6 5.3043 -6.3045 6.7459 14 1 4.7168 -6.3788 7.6491 15 6 6.5347 -6.9684 6.6539 16 7 7.2452 -6.8788 5.5612 17 14 7.1586 -7.9826 8.0932 18 1 6.1746 -7.9238 9.2037 19 1 7.3378 -9.3930 7.6641 20 1 8.4599 -7.4370 8.5561 21 7 3.8398 -4.1147 3.4950 22 6 3.3893 -3.4908 2.4238 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3635 0.5139 0.8899 26 1 1.8933 -0.5138 -0.8899 27 1 3.1299 1.4426 0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6765 1.9564 0.8899 30 1 1.6052 -0.2616 2.1370 31 1 3.1262 -0.6442 1.2953 32 1 2.0699 -2.6549 0.3004 33 1 0.5489 -2.2723 1.1422 34 1 0.3663 -2.5294 3.5793 35 1 1.2617 -3.7118 5.5705 36 1 3.1389 -4.8786 6.5430 37 1 8.0968 -7.3388 5.4975 38 1 4.0068 -3.4366 1.5395 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000456774079.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:40 Heat of formation + Delta-G solvation = -42.434359 kcal Electronic energy + Delta-G solvation = -18817.182392 eV Core-core repulsion = 15850.980240 eV Total energy + Delta-G solvation = -2966.202152 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.34338 -39.22249 -37.73067 -35.50543 -34.51487 -33.67516 -32.29922 -29.49829 -28.12439 -27.90163 -24.98851 -24.75503 -22.62165 -21.64367 -20.73528 -19.58437 -18.22564 -17.66506 -16.81646 -16.27755 -16.02605 -15.68279 -15.60016 -15.19266 -14.80332 -14.66970 -14.41186 -14.01318 -13.79738 -13.52542 -13.13820 -13.02114 -12.86305 -12.74431 -12.67361 -12.60748 -12.08699 -11.98421 -11.64162 -11.42034 -11.34728 -11.13236 -10.86395 -10.58729 -10.38590 -9.42314 -8.77178 -8.31391 -6.92073 0.35750 0.61547 1.39362 1.40440 1.58250 2.20567 2.43115 2.73113 3.05023 3.67403 3.77756 3.86516 4.02731 4.10802 4.16263 4.22914 4.32663 4.44325 4.57964 4.76034 4.85686 4.87641 4.92256 4.94999 5.03493 5.12023 5.14957 5.24252 5.26939 5.30832 5.40192 5.45367 5.57754 5.64386 5.73491 5.79363 6.10225 6.31091 6.79509 7.04813 7.65309 8.45832 8.62338 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.050958 B = 0.003414 C = 0.003292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.336747 B = 8200.409776 C = 8504.216361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.096 4.096 3 C -0.148 4.148 4 C -0.106 4.106 5 C -0.059 4.059 6 C -0.180 4.180 7 C -0.040 4.040 8 C -0.220 4.220 9 C 0.341 3.659 10 N -0.674 5.674 11 C 0.517 3.483 12 O -0.566 6.566 13 C -0.567 4.567 14 H 0.094 0.906 15 C 0.025 3.975 16 N -0.817 5.817 17 Si 1.005 2.995 18 H -0.244 1.244 19 H -0.269 1.269 20 H -0.269 1.269 21 N -0.532 5.532 22 C 0.108 3.892 23 H 0.057 0.943 24 H 0.062 0.938 25 H 0.055 0.945 26 H 0.070 0.930 27 H 0.047 0.953 28 H 0.061 0.939 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.046 0.954 32 H 0.071 0.929 33 H 0.092 0.908 34 H 0.172 0.828 35 H 0.159 0.841 36 H 0.414 0.586 37 H 0.276 0.724 38 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.287 11.803 -5.694 20.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.114 4.114 3 C -0.206 4.206 4 C -0.144 4.144 5 C -0.096 4.096 6 C -0.184 4.184 7 C -0.066 4.066 8 C -0.244 4.244 9 C 0.109 3.891 10 N -0.320 5.320 11 C 0.321 3.679 12 O -0.446 6.446 13 C -0.603 4.603 14 H 0.112 0.888 15 C -0.190 4.190 16 N -0.447 5.447 17 Si 0.823 3.177 18 H -0.166 1.166 19 H -0.194 1.194 20 H -0.193 1.193 21 N -0.248 5.248 22 C -0.051 4.051 23 H 0.077 0.923 24 H 0.081 0.919 25 H 0.074 0.926 26 H 0.088 0.912 27 H 0.066 0.934 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.064 0.936 32 H 0.090 0.910 33 H 0.111 0.889 34 H 0.189 0.811 35 H 0.176 0.824 36 H 0.251 0.749 37 H 0.086 0.914 38 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -13.748 11.351 -6.444 18.958 hybrid contribution -0.115 -0.225 0.858 0.895 sum -13.863 11.126 -5.586 18.633 Atomic orbital electron populations 1.21886 0.94354 1.02272 1.01935 1.21123 0.96644 0.96009 0.97666 1.21849 1.00668 0.96048 1.02009 1.21618 1.00167 0.94155 0.98410 1.20471 1.01840 0.94176 0.93153 1.20962 0.95467 1.03274 0.98699 1.21561 1.00150 0.94418 0.90459 1.21767 0.94704 1.05189 1.02789 1.19234 0.90441 0.91660 0.87750 1.44015 1.23410 1.52573 1.11987 1.18958 0.79477 0.80140 0.89354 1.90686 1.56389 1.64168 1.33399 1.21453 1.06326 1.31535 1.01003 0.88803 1.27059 0.95812 0.96422 0.99707 1.70192 1.11268 1.34735 1.28485 0.84874 0.78674 0.77093 0.77028 1.16638 1.19372 1.19345 1.67750 1.36996 1.19391 1.00638 1.22799 0.94414 0.92733 0.95136 0.92349 0.91944 0.92575 0.91185 0.93397 0.91951 0.92727 0.91893 0.93557 0.91005 0.88925 0.81053 0.82353 0.74908 0.91391 0.83573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 8.95 71.98 0.64 -1.18 16 2 C -0.10 -1.44 2.92 -10.79 -0.03 -1.48 16 3 C -0.15 -2.17 9.19 71.98 0.66 -1.50 16 4 C -0.11 -1.99 4.66 30.60 0.14 -1.85 16 5 C -0.06 -1.16 5.12 29.85 0.15 -1.01 16 6 C -0.18 -5.14 5.15 -19.74 -0.10 -5.24 16 7 C -0.04 -1.05 9.85 22.44 0.22 -0.83 16 8 C -0.22 -7.05 9.94 22.52 0.22 -6.82 16 9 C 0.34 15.35 7.42 133.04 0.99 16.33 16 10 N -0.67 -32.42 5.37 -312.52 -1.68 -34.10 16 11 C 0.52 31.20 7.70 86.31 0.66 31.87 16 12 O -0.57 -39.52 13.27 -4.42 -0.06 -39.58 16 13 C -0.57 -32.42 9.54 24.80 0.24 -32.19 16 14 H 0.09 4.71 7.85 -2.91 -0.02 4.69 16 15 C 0.03 1.43 5.50 85.33 0.47 1.90 16 16 N -0.82 -50.88 11.83 21.85 0.26 -50.62 16 17 Si 1.00 41.02 29.56 68.60 2.03 43.05 16 18 H -0.24 -9.06 7.11 99.48 0.71 -8.36 16 19 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16 20 H -0.27 -10.58 7.11 99.48 0.71 -9.87 16 21 N -0.53 -26.72 7.88 -193.12 -1.52 -28.24 16 22 C 0.11 4.18 10.85 84.66 0.92 5.10 16 23 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 24 H 0.06 0.72 6.56 -2.38 -0.02 0.71 16 25 H 0.06 0.67 8.14 -2.39 -0.02 0.66 16 26 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.07 1.41 8.09 -2.38 -0.02 1.39 16 33 H 0.09 1.44 6.52 -2.39 -0.02 1.42 16 34 H 0.17 2.87 8.06 -2.91 -0.02 2.85 16 35 H 0.16 3.88 8.06 -2.91 -0.02 3.86 16 36 H 0.41 16.11 8.68 -92.71 -0.80 15.31 16 37 H 0.28 15.50 8.29 -92.71 -0.77 14.73 16 38 H 0.15 5.24 8.06 -2.91 -0.02 5.22 16 Total: -1.00 -82.06 321.32 4.46 -77.60 By element: Atomic # 1 Polarization: 28.54 SS G_CDS: 0.25 Total: 28.79 kcal Atomic # 6 Polarization: -2.09 SS G_CDS: 5.19 Total: 3.10 kcal Atomic # 7 Polarization: -110.02 SS G_CDS: -2.94 Total: -112.96 kcal Atomic # 8 Polarization: -39.52 SS G_CDS: -0.06 Total: -39.58 kcal Atomic # 14 Polarization: 41.02 SS G_CDS: 2.03 Total: 43.05 kcal Total: -82.06 4.46 -77.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456774079.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.163 kcal (2) G-P(sol) polarization free energy of solvation -82.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds