Wall clock time and date at job start Mon Mar 30 2020 06:56:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.46877 * 2 1 4 4 C 1.50697 * 109.47603 * 239.99711 * 2 1 3 5 5 H 1.07994 * 120.00101 * 240.00248 * 4 2 1 6 6 C 1.37884 * 119.99396 * 59.99915 * 4 2 1 7 7 N 1.31512 * 120.00600 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99341 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47421 * 90.00214 * 8 6 4 10 10 H 1.48508 * 109.46874 * 209.99893 * 8 6 4 11 11 H 1.48502 * 109.47377 * 329.99754 * 8 6 4 12 12 N 1.46504 * 109.46871 * 119.99697 * 2 1 3 13 13 C 1.46498 * 120.00071 * 60.00390 * 12 2 1 14 14 C 1.34780 * 119.99935 * 240.00084 * 12 2 1 15 15 O 1.21692 * 119.99941 * 355.06922 * 14 12 2 16 16 C 1.46673 * 119.99946 * 175.06348 * 14 12 2 17 17 N 1.37644 * 126.23669 * 256.52467 * 16 14 12 18 18 H 0.96998 * 125.68145 * 0.02562 * 17 16 14 19 19 C 1.35538 * 108.64783 * 180.02562 * 17 16 14 20 20 C 1.35459 * 108.86770 * 0.02562 * 19 17 16 21 21 C 1.37875 * 126.23179 * 76.21389 * 16 14 12 22 22 C 1.50709 * 126.45543 * 0.02562 * 21 16 14 23 23 C 1.52996 * 117.49769 * 188.74148 * 22 21 16 24 24 C 1.53001 * 117.49723 * 120.08479 * 22 21 16 25 25 H 1.09005 * 109.46877 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47385 * 60.00376 * 1 2 3 27 27 H 1.08995 * 109.47605 * 300.00071 * 1 2 3 28 28 H 0.96993 * 120.00280 * 179.97438 * 7 6 4 29 29 H 1.08996 * 109.46877 * 95.17213 * 13 12 2 30 30 H 1.08994 * 109.47280 * 215.17025 * 13 12 2 31 31 H 1.08996 * 109.46940 * 335.17046 * 13 12 2 32 32 H 1.07996 * 125.57074 * 179.97438 * 19 17 16 33 33 H 1.07996 * 126.06687 * 180.02562 * 20 19 17 34 34 H 1.09001 * 115.54490 * 334.41549 * 22 21 16 35 35 H 1.08998 * 117.49813 * 0.02562 * 23 22 21 36 36 H 1.08997 * 117.49534 * 145.01912 * 23 22 21 37 37 H 1.09001 * 117.49590 * 214.98247 * 24 22 21 38 38 H 1.08995 * 117.49973 * 359.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2393 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3215 -1.1204 -4.0078 9 1 1.3430 -2.1618 -4.4118 10 1 2.4868 -0.1414 -5.1122 11 1 3.6296 -1.7583 -3.7120 12 7 2.0183 -0.6906 1.1963 13 6 1.6644 -2.0931 1.4281 14 6 2.7931 -0.0355 2.0834 15 8 3.1613 1.1002 1.8477 16 6 3.1925 -0.6914 3.3331 17 7 2.6619 -0.4561 4.5811 18 1 1.9550 0.1759 4.7854 19 6 3.2915 -1.2546 5.4773 20 6 4.2178 -1.9983 4.8264 21 6 4.1636 -1.6604 3.4706 22 6 5.0113 -2.2415 2.3683 23 6 5.8843 -3.4503 2.7110 24 6 6.5284 -2.0804 2.4841 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 0.5138 0.8899 28 1 0.7096 1.1617 -3.4844 29 1 2.4609 -2.7356 1.0528 30 1 1.5337 -2.2630 2.4968 31 1 0.7353 -2.3243 0.9072 32 1 3.0885 -1.2912 6.5374 33 1 4.8769 -2.7273 5.2741 34 1 4.5757 -2.2020 1.3699 35 1 5.8453 -3.8255 3.7337 36 1 6.0234 -4.2060 1.9380 37 1 7.0909 -1.9353 1.5618 38 1 6.9133 -1.5537 3.3573 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457538187.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:35 Heat of formation + Delta-G solvation = 37.214744 kcal Electronic energy + Delta-G solvation = -20126.668199 eV Core-core repulsion = 17163.919891 eV Total energy + Delta-G solvation = -2962.748308 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.13018 -38.51056 -36.77627 -35.30428 -32.84376 -30.57443 -30.02699 -28.39729 -26.11907 -25.22865 -23.32133 -22.24107 -22.08076 -20.58516 -19.59227 -18.20203 -17.31272 -16.34384 -15.98954 -15.46311 -14.97745 -14.38495 -14.21362 -14.02677 -13.65048 -13.12007 -12.84243 -12.64570 -12.47656 -12.00319 -11.58823 -11.48933 -11.35069 -11.25006 -11.07805 -10.80840 -10.74375 -10.59143 -10.28493 -10.18511 -10.14149 -9.24171 -9.13275 -8.51478 -8.44206 -7.77679 -7.62555 -6.07662 -4.15342 2.15764 2.89827 2.93448 3.27118 3.34233 3.37345 3.64267 4.12142 4.25329 4.41093 4.91261 5.13686 5.16681 5.19209 5.24930 5.33183 5.62137 5.67178 5.81759 5.85741 5.99033 6.09277 6.13989 6.29956 6.34939 6.37999 6.59290 6.72179 6.78243 7.00336 7.01630 7.17393 7.39384 7.47364 7.62496 7.69952 7.98744 8.17225 8.47209 8.80722 8.98769 9.51065 10.97836 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.022021 B = 0.006458 C = 0.005485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.227989 B = 4334.727367 C = 5103.616374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.257 3.743 3 H 0.064 0.936 4 C -0.523 4.523 5 H 0.060 0.940 6 C 0.065 3.935 7 N -0.889 5.889 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.578 5.578 13 C 0.091 3.909 14 C 0.572 3.428 15 O -0.543 6.543 16 C -0.009 4.009 17 N -0.532 5.532 18 H 0.417 0.583 19 C -0.006 4.006 20 C -0.198 4.198 21 C -0.091 4.091 22 C -0.084 4.084 23 C -0.173 4.173 24 C -0.172 4.172 25 H 0.031 0.969 26 H 0.095 0.905 27 H 0.010 0.990 28 H 0.263 0.737 29 H 0.050 0.950 30 H 0.051 0.949 31 H 0.074 0.926 32 H 0.165 0.835 33 H 0.135 0.865 34 H 0.112 0.888 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.323 -7.726 13.509 15.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.157 3.843 3 H 0.081 0.919 4 C -0.562 4.562 5 H 0.079 0.921 6 C -0.138 4.138 7 N -0.527 5.527 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.308 5.308 13 C -0.053 4.053 14 C 0.357 3.643 15 O -0.420 6.420 16 C -0.125 4.125 17 N -0.126 5.126 18 H 0.254 0.746 19 C -0.140 4.140 20 C -0.223 4.223 21 C -0.098 4.098 22 C -0.103 4.103 23 C -0.210 4.210 24 C -0.209 4.209 25 H 0.051 0.949 26 H 0.114 0.886 27 H 0.029 0.971 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.093 0.907 32 H 0.182 0.818 33 H 0.153 0.847 34 H 0.130 0.870 35 H 0.112 0.888 36 H 0.111 0.889 37 H 0.112 0.888 38 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 3.280 -6.888 13.221 15.264 hybrid contribution -0.041 -0.277 -0.682 0.737 sum 3.239 -7.165 12.539 14.800 Atomic orbital electron populations 1.22112 0.98052 0.99510 1.00857 1.19015 0.90831 0.94528 0.79908 0.91856 1.21302 1.31796 1.12966 0.90149 0.92145 1.24890 0.94946 0.94952 0.98977 1.69869 1.36485 1.22593 1.23786 0.86487 0.79245 0.79288 0.82347 1.20611 1.21105 1.19868 1.48209 1.47460 1.11864 1.23286 1.21540 1.01284 0.82739 0.99702 1.17163 0.79215 0.85349 0.82602 1.90799 1.54536 1.18631 1.78060 1.20297 1.02493 1.03631 0.86043 1.41768 1.31344 1.33261 1.06229 0.74582 1.21757 0.99301 0.97724 0.95214 1.20547 1.03531 1.05117 0.93098 1.18869 0.98923 0.98260 0.93776 1.20381 0.91101 1.01127 0.97695 1.22923 1.04480 0.91181 1.02403 1.22959 0.95076 0.99744 1.03152 0.94946 0.88620 0.97095 0.92674 0.93119 0.93041 0.90741 0.81762 0.84679 0.86989 0.88831 0.88878 0.88820 0.88905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.48 8.96 37.16 0.33 -3.15 16 2 C 0.26 6.58 2.62 -69.08 -0.18 6.40 16 3 H 0.06 1.88 6.91 -51.93 -0.36 1.52 16 4 C -0.52 -14.17 8.37 -34.44 -0.29 -14.46 16 5 H 0.06 1.62 7.65 -52.49 -0.40 1.21 16 6 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 7 N -0.89 -25.11 11.32 55.43 0.63 -24.48 16 8 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 9 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 10 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 12 N -0.58 -12.60 2.75 -176.81 -0.49 -13.09 16 13 C 0.09 1.63 9.28 59.85 0.56 2.19 16 14 C 0.57 12.54 7.31 -12.85 -0.09 12.45 16 15 O -0.54 -14.13 16.45 5.20 0.09 -14.04 16 16 C -0.01 -0.16 5.12 -81.98 -0.42 -0.58 16 17 N -0.53 -7.29 6.10 -9.39 -0.06 -7.35 16 18 H 0.42 4.79 8.96 -40.82 -0.37 4.43 16 19 C -0.01 -0.08 11.89 -16.91 -0.20 -0.28 16 20 C -0.20 -2.59 10.15 -39.98 -0.41 -2.99 16 21 C -0.09 -1.46 5.67 -104.15 -0.59 -2.05 16 22 C -0.08 -1.32 6.01 -91.77 -0.55 -1.87 16 23 C -0.17 -2.12 10.04 -26.70 -0.27 -2.39 16 24 C -0.17 -2.35 10.24 -26.70 -0.27 -2.63 16 25 H 0.03 0.71 6.67 -51.93 -0.35 0.36 16 26 H 0.10 2.49 6.07 -51.93 -0.32 2.17 16 27 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 28 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 29 H 0.05 0.88 7.40 -51.93 -0.38 0.50 16 30 H 0.05 0.81 7.00 -51.93 -0.36 0.45 16 31 H 0.07 1.32 6.44 -51.93 -0.33 0.99 16 32 H 0.17 1.26 8.06 -52.49 -0.42 0.84 16 33 H 0.14 1.47 7.26 -52.49 -0.38 1.09 16 34 H 0.11 2.00 7.40 -51.93 -0.38 1.61 16 35 H 0.09 1.02 7.03 -51.93 -0.37 0.65 16 36 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 37 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 38 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 316.16 15.07 4.76 4.76 Total: -1.00 -31.72 316.16 -7.82 -39.54 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -5.25 Total: 6.27 kcal Atomic # 6 Polarization: -5.21 SS G_CDS: -2.48 Total: -7.69 kcal Atomic # 7 Polarization: -45.00 SS G_CDS: 0.08 Total: -44.92 kcal Atomic # 8 Polarization: -14.13 SS G_CDS: 0.09 Total: -14.04 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -31.72 -7.82 -39.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457538187.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.752 kcal (2) G-P(sol) polarization free energy of solvation -31.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds