Wall clock time and date at job start Mon Mar 30 2020 06:56:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.46877 * 2 1 4 4 C 1.50697 * 109.47603 * 239.99711 * 2 1 3 5 5 H 1.07994 * 120.00101 * 240.00248 * 4 2 1 6 6 C 1.37884 * 119.99396 * 59.99915 * 4 2 1 7 7 N 1.31512 * 120.00600 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99341 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47421 * 90.00214 * 8 6 4 10 10 H 1.48508 * 109.46874 * 209.99893 * 8 6 4 11 11 H 1.48502 * 109.47377 * 329.99754 * 8 6 4 12 12 N 1.46504 * 109.46871 * 119.99697 * 2 1 3 13 13 C 1.46498 * 120.00071 * 60.00390 * 12 2 1 14 14 C 1.34780 * 119.99935 * 240.00084 * 12 2 1 15 15 O 1.21692 * 119.99941 * 355.06922 * 14 12 2 16 16 C 1.46673 * 119.99946 * 175.06348 * 14 12 2 17 17 N 1.37644 * 126.23669 * 256.52467 * 16 14 12 18 18 H 0.96998 * 125.68145 * 0.02562 * 17 16 14 19 19 C 1.35538 * 108.64783 * 180.02562 * 17 16 14 20 20 C 1.35459 * 108.86770 * 0.02562 * 19 17 16 21 21 C 1.37875 * 126.23179 * 76.21389 * 16 14 12 22 22 C 1.50709 * 126.45543 * 0.02562 * 21 16 14 23 23 C 1.52996 * 117.49769 * 188.74148 * 22 21 16 24 24 C 1.53001 * 117.49723 * 120.08479 * 22 21 16 25 25 H 1.09005 * 109.46877 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47385 * 60.00376 * 1 2 3 27 27 H 1.08995 * 109.47605 * 300.00071 * 1 2 3 28 28 H 0.96993 * 120.00280 * 179.97438 * 7 6 4 29 29 H 1.08996 * 109.46877 * 95.17213 * 13 12 2 30 30 H 1.08994 * 109.47280 * 215.17025 * 13 12 2 31 31 H 1.08996 * 109.46940 * 335.17046 * 13 12 2 32 32 H 1.07996 * 125.57074 * 179.97438 * 19 17 16 33 33 H 1.07996 * 126.06687 * 180.02562 * 20 19 17 34 34 H 1.09001 * 115.54490 * 334.41549 * 22 21 16 35 35 H 1.08998 * 117.49813 * 0.02562 * 23 22 21 36 36 H 1.08997 * 117.49534 * 145.01912 * 23 22 21 37 37 H 1.09001 * 117.49590 * 214.98247 * 24 22 21 38 38 H 1.08995 * 117.49973 * 359.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2393 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3215 -1.1204 -4.0078 9 1 1.3430 -2.1618 -4.4118 10 1 2.4868 -0.1414 -5.1122 11 1 3.6296 -1.7583 -3.7120 12 7 2.0183 -0.6906 1.1963 13 6 1.6644 -2.0931 1.4281 14 6 2.7931 -0.0355 2.0834 15 8 3.1613 1.1002 1.8477 16 6 3.1925 -0.6914 3.3331 17 7 2.6619 -0.4561 4.5811 18 1 1.9550 0.1759 4.7854 19 6 3.2915 -1.2546 5.4773 20 6 4.2178 -1.9983 4.8264 21 6 4.1636 -1.6604 3.4706 22 6 5.0113 -2.2415 2.3683 23 6 5.8843 -3.4503 2.7110 24 6 6.5284 -2.0804 2.4841 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 0.5138 0.8899 28 1 0.7096 1.1617 -3.4844 29 1 2.4609 -2.7356 1.0528 30 1 1.5337 -2.2630 2.4968 31 1 0.7353 -2.3243 0.9072 32 1 3.0885 -1.2912 6.5374 33 1 4.8769 -2.7273 5.2741 34 1 4.5757 -2.2020 1.3699 35 1 5.8453 -3.8255 3.7337 36 1 6.0234 -4.2060 1.9380 37 1 7.0909 -1.9353 1.5618 38 1 6.9133 -1.5537 3.3573 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457538187.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:35 Heat of formation + Delta-G solvation = 17.420307 kcal Electronic energy + Delta-G solvation = -20127.526550 eV Core-core repulsion = 17163.919891 eV Total energy + Delta-G solvation = -2963.606659 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.29385 -40.18713 -37.86096 -37.17768 -34.82928 -31.84200 -31.60365 -29.77339 -27.71189 -27.31826 -24.72457 -23.47988 -23.20931 -21.85221 -21.08322 -19.44386 -18.84830 -18.32673 -17.68662 -16.82391 -16.57492 -15.92928 -15.82966 -15.12327 -14.86998 -14.76399 -14.41906 -14.08149 -13.75986 -13.54322 -13.37677 -13.08600 -12.97384 -12.76415 -12.65207 -12.39164 -12.30079 -12.23183 -12.16648 -11.68653 -11.26386 -11.22943 -10.93117 -10.54827 -9.53165 -9.44123 -8.92989 -8.17136 -6.33627 0.96285 1.39543 1.41506 1.46655 1.51545 1.92711 2.16195 2.42131 2.74732 3.10761 3.16098 3.74452 3.89266 4.05564 4.22961 4.33575 4.39909 4.55774 4.62170 4.66383 4.72313 4.82958 4.83342 4.94082 4.97050 5.01730 5.09136 5.27834 5.32314 5.39962 5.49057 5.56961 5.62714 5.92096 5.99172 6.06411 6.11933 6.65210 6.69305 6.72619 7.20391 7.40010 8.87432 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.022021 B = 0.006458 C = 0.005485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.227989 B = 4334.727367 C = 5103.616374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.261 3.739 3 H 0.009 0.991 4 C -0.539 4.539 5 H 0.058 0.942 6 C 0.017 3.983 7 N -0.917 5.917 8 Si 0.965 3.035 9 H -0.265 1.265 10 H -0.284 1.284 11 H -0.273 1.273 12 N -0.581 5.581 13 C 0.096 3.904 14 C 0.571 3.429 15 O -0.601 6.601 16 C -0.060 4.060 17 N -0.528 5.528 18 H 0.425 0.575 19 C 0.029 3.971 20 C -0.212 4.212 21 C -0.083 4.083 22 C -0.120 4.120 23 C -0.139 4.139 24 C -0.176 4.176 25 H 0.049 0.951 26 H 0.071 0.929 27 H 0.022 0.978 28 H 0.266 0.734 29 H 0.052 0.948 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.215 0.785 33 H 0.164 0.836 34 H 0.077 0.923 35 H 0.118 0.882 36 H 0.103 0.897 37 H 0.090 0.910 38 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.831 -10.380 15.688 19.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.159 3.841 3 H 0.027 0.973 4 C -0.577 4.577 5 H 0.076 0.924 6 C -0.183 4.183 7 N -0.556 5.556 8 Si 0.789 3.211 9 H -0.190 1.190 10 H -0.210 1.210 11 H -0.198 1.198 12 N -0.310 5.310 13 C -0.046 4.046 14 C 0.359 3.641 15 O -0.483 6.483 16 C -0.174 4.174 17 N -0.123 5.123 18 H 0.264 0.736 19 C -0.105 4.105 20 C -0.236 4.236 21 C -0.092 4.092 22 C -0.139 4.139 23 C -0.176 4.176 24 C -0.213 4.213 25 H 0.068 0.932 26 H 0.090 0.910 27 H 0.041 0.959 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.096 0.904 31 H 0.094 0.906 32 H 0.232 0.768 33 H 0.181 0.819 34 H 0.095 0.905 35 H 0.136 0.864 36 H 0.122 0.878 37 H 0.108 0.892 38 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 3.766 -9.578 15.414 18.534 hybrid contribution -0.156 0.556 -1.283 1.407 sum 3.610 -9.022 14.131 17.149 Atomic orbital electron populations 1.21886 0.96570 1.00348 1.00212 1.18643 0.91892 0.92133 0.81439 0.97268 1.21524 1.32037 1.13030 0.91121 0.92400 1.25719 0.95016 0.95606 1.01947 1.70004 1.37272 1.23752 1.24528 0.85460 0.78851 0.78342 0.78413 1.19014 1.20961 1.19756 1.48173 1.47366 1.13240 1.22231 1.21643 1.01202 0.80325 1.01434 1.17791 0.77863 0.84591 0.83902 1.90743 1.56658 1.21382 1.79539 1.19644 1.05753 1.06346 0.85653 1.41815 1.31604 1.33706 1.05169 0.73628 1.22598 0.96618 0.94631 0.96673 1.20880 1.04803 1.06389 0.91518 1.19104 0.97655 0.97101 0.95292 1.20363 0.92208 1.04838 0.96468 1.23029 1.00488 0.90090 1.03995 1.23023 0.93493 1.01410 1.03384 0.93186 0.91023 0.95901 0.92523 0.92959 0.90430 0.90562 0.76838 0.81873 0.90462 0.86423 0.87824 0.89156 0.88243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.42 8.96 71.98 0.64 -5.78 16 2 C 0.26 14.03 2.62 44.24 0.12 14.14 16 3 H 0.01 0.60 6.91 -2.38 -0.02 0.58 16 4 C -0.54 -30.16 8.37 25.60 0.21 -29.95 16 5 H 0.06 3.19 7.65 -2.91 -0.02 3.16 16 6 C 0.02 0.94 5.30 84.66 0.45 1.39 16 7 N -0.92 -53.42 11.32 21.45 0.24 -53.18 16 8 Si 0.96 43.81 29.54 68.60 2.03 45.84 16 9 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 10 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 11 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 12 N -0.58 -26.32 2.75 -831.54 -2.29 -28.61 16 13 C 0.10 3.44 9.28 127.77 1.19 4.63 16 14 C 0.57 26.22 7.31 86.44 0.63 26.85 16 15 O -0.60 -33.58 16.45 -4.32 -0.07 -33.65 16 16 C -0.06 -2.09 5.12 40.35 0.21 -1.88 16 17 N -0.53 -13.36 6.10 -183.62 -1.12 -14.48 16 18 H 0.43 9.07 8.96 -92.71 -0.83 8.24 16 19 C 0.03 0.54 11.89 83.48 0.99 1.54 16 20 C -0.21 -4.69 10.15 22.01 0.22 -4.46 16 21 C -0.08 -2.55 5.67 -19.56 -0.11 -2.66 16 22 C -0.12 -3.69 6.01 -11.54 -0.07 -3.76 16 23 C -0.14 -3.04 10.04 30.62 0.31 -2.73 16 24 C -0.18 -4.62 10.24 30.62 0.31 -4.30 16 25 H 0.05 2.21 6.67 -2.38 -0.02 2.19 16 26 H 0.07 3.86 6.07 -2.39 -0.01 3.84 16 27 H 0.02 1.00 8.14 -2.39 -0.02 0.99 16 28 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 29 H 0.05 1.84 7.40 -2.39 -0.02 1.82 16 30 H 0.08 2.36 7.00 -2.39 -0.02 2.34 16 31 H 0.08 2.66 6.44 -2.39 -0.02 2.64 16 32 H 0.22 1.83 8.06 -2.91 -0.02 1.80 16 33 H 0.16 2.65 7.26 -2.91 -0.02 2.63 16 34 H 0.08 2.88 7.40 -2.39 -0.02 2.86 16 35 H 0.12 2.02 7.03 -2.39 -0.02 2.00 16 36 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 37 H 0.09 2.37 8.14 -2.39 -0.02 2.36 16 38 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 Total: -1.00 -73.70 316.16 4.14 -69.56 By element: Atomic # 1 Polarization: 21.27 SS G_CDS: 0.24 Total: 21.51 kcal Atomic # 6 Polarization: -12.10 SS G_CDS: 5.10 Total: -6.99 kcal Atomic # 7 Polarization: -93.10 SS G_CDS: -3.17 Total: -96.27 kcal Atomic # 8 Polarization: -33.58 SS G_CDS: -0.07 Total: -33.65 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -73.70 4.14 -69.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457538187.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.979 kcal (2) G-P(sol) polarization free energy of solvation -73.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.558 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds