Wall clock time and date at job start Mon Mar 30 2020 06:47:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47000 * 2 1 4 4 H 1.08999 * 109.47091 * 55.00324 * 3 2 1 5 5 C 1.50706 * 109.46812 * 174.99913 * 3 2 1 6 6 H 1.07998 * 119.99769 * 120.00769 * 5 3 2 7 7 C 1.37877 * 120.00286 * 299.99911 * 5 3 2 8 8 N 1.31515 * 119.99896 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99872 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47398 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.46974 * 120.00544 * 9 7 5 12 12 H 1.48508 * 109.47010 * 240.00184 * 9 7 5 13 13 N 1.46499 * 109.47341 * 295.00080 * 3 2 1 14 14 C 1.34777 * 119.99665 * 85.27876 * 13 3 2 15 15 O 1.21693 * 120.00200 * 359.72115 * 14 13 3 16 16 C 1.46680 * 119.99703 * 179.72441 * 14 13 3 17 17 N 1.37655 * 126.23468 * 0.02562 * 16 14 13 18 18 H 0.96998 * 125.67333 * 0.02562 * 17 16 14 19 19 C 1.35525 * 108.64376 * 180.02562 * 17 16 14 20 20 C 1.35452 * 108.87395 * 359.97438 * 19 17 16 21 21 C 1.37866 * 126.23126 * 179.71115 * 16 14 13 22 22 C 1.50705 * 126.46110 * 359.96756 * 21 16 14 23 23 C 1.53000 * 117.50032 * 188.74702 * 22 21 16 24 24 C 1.52994 * 117.49940 * 120.08508 * 22 21 16 25 25 H 1.09002 * 109.46986 * 299.99873 * 1 2 3 26 26 H 1.09003 * 109.47322 * 59.99862 * 1 2 3 27 27 H 1.09004 * 109.47177 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46986 * 240.00127 * 2 1 3 29 29 H 1.08994 * 109.47111 * 120.00040 * 2 1 3 30 30 H 0.96999 * 119.99952 * 179.97438 * 8 7 5 31 31 H 0.97001 * 119.99790 * 264.99588 * 13 3 2 32 32 H 1.08005 * 125.56571 * 179.97438 * 19 17 16 33 33 H 1.08006 * 126.07089 * 180.02562 * 20 19 17 34 34 H 1.09002 * 115.54685 * 334.41112 * 22 21 16 35 35 H 1.09001 * 117.49637 * 359.97438 * 23 22 21 36 36 H 1.08997 * 117.49706 * 145.01878 * 23 22 21 37 37 H 1.09003 * 117.49647 * 214.98037 * 24 22 21 38 38 H 1.09000 * 117.50144 * 359.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4442 0.1239 6 1 4.1471 1.8889 -0.6522 7 6 4.1433 0.8784 1.2280 8 7 3.4062 0.3366 2.1729 9 14 6.0049 0.8812 1.3817 10 1 6.5987 1.5473 0.1947 11 1 6.3990 1.6166 2.6103 12 1 6.4970 -0.5176 1.4629 13 7 1.6524 2.0975 -1.2518 14 6 0.4371 2.6693 -1.3649 15 8 -0.3400 2.6371 -0.4290 16 6 0.0514 3.3304 -2.6162 17 7 0.8246 3.4417 -3.7496 18 1 1.7234 3.0935 -3.8576 19 6 0.1209 4.1187 -4.6894 20 6 -1.0912 4.4437 -4.1795 21 6 -1.1540 3.9483 -2.8733 22 6 -2.3185 4.0698 -1.9245 23 6 -3.6329 4.6160 -2.4856 24 6 -2.7815 5.4794 -1.5513 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 3.8293 -0.0619 2.9495 31 1 2.2719 2.1232 -1.9977 32 1 0.4696 4.3597 -5.6827 33 1 -1.8724 4.9853 -4.6924 34 1 -2.3809 3.2995 -1.1558 35 1 -3.6552 4.8879 -3.5409 36 1 -4.5600 4.2054 -2.0857 37 1 -3.1490 5.6365 -0.5372 38 1 -2.2437 6.3190 -1.9917 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457731643.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:21 Heat of formation + Delta-G solvation = 3.062779 kcal Electronic energy + Delta-G solvation = -19799.761417 eV Core-core repulsion = 16835.532168 eV Total energy + Delta-G solvation = -2964.229248 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.25660 -40.10498 -37.85576 -36.88137 -34.34091 -32.95377 -31.55117 -30.28110 -28.77528 -25.31996 -24.23203 -23.20168 -22.96338 -21.86017 -21.11201 -20.29632 -19.28568 -18.16645 -17.21080 -16.59042 -16.40542 -16.31480 -15.87482 -15.07791 -14.99933 -14.65820 -14.61326 -13.85686 -13.80042 -13.48766 -13.45714 -13.18958 -12.88691 -12.72518 -12.39359 -12.29015 -12.17829 -12.07959 -11.65394 -11.61563 -11.31684 -11.07510 -10.69141 -10.53808 -9.73149 -9.53445 -8.96295 -8.18266 -6.36121 0.59323 1.42501 1.43617 1.55135 1.87808 2.26898 2.35453 2.49543 2.64696 3.11409 3.21577 3.84382 4.09261 4.17807 4.27502 4.36889 4.46022 4.54399 4.55164 4.66148 4.73699 4.83634 4.96776 5.03853 5.09361 5.21226 5.30039 5.33186 5.41158 5.49198 5.55121 5.60838 5.74320 5.81553 5.92460 6.06765 6.13860 6.64034 6.71239 6.97645 7.30663 7.52742 8.87492 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.027563 B = 0.005122 C = 0.004712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.612104 B = 5465.180517 C = 5941.131348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.119 4.119 3 C 0.280 3.720 4 H -0.001 1.001 5 C -0.548 4.548 6 H 0.071 0.929 7 C 0.016 3.984 8 N -0.914 5.914 9 Si 0.971 3.029 10 H -0.260 1.260 11 H -0.284 1.284 12 H -0.278 1.278 13 N -0.706 5.706 14 C 0.570 3.430 15 O -0.573 6.573 16 C -0.082 4.082 17 N -0.531 5.531 18 H 0.428 0.572 19 C 0.047 3.953 20 C -0.225 4.225 21 C -0.060 4.060 22 C -0.115 4.115 23 C -0.151 4.151 24 C -0.169 4.169 25 H 0.026 0.974 26 H 0.040 0.960 27 H 0.045 0.955 28 H 0.040 0.960 29 H 0.073 0.927 30 H 0.265 0.735 31 H 0.396 0.604 32 H 0.217 0.783 33 H 0.163 0.837 34 H 0.087 0.913 35 H 0.114 0.886 36 H 0.102 0.898 37 H 0.091 0.909 38 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.285 7.356 -15.654 18.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.158 4.158 3 C 0.177 3.823 4 H 0.017 0.983 5 C -0.587 4.587 6 H 0.089 0.911 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.796 3.204 10 H -0.184 1.184 11 H -0.211 1.211 12 H -0.204 1.204 13 N -0.354 5.354 14 C 0.358 3.642 15 O -0.453 6.453 16 C -0.195 4.195 17 N -0.127 5.127 18 H 0.267 0.733 19 C -0.090 4.090 20 C -0.249 4.249 21 C -0.069 4.069 22 C -0.134 4.134 23 C -0.188 4.188 24 C -0.206 4.206 25 H 0.046 0.954 26 H 0.059 0.941 27 H 0.064 0.936 28 H 0.058 0.942 29 H 0.092 0.908 30 H 0.075 0.925 31 H 0.230 0.770 32 H 0.234 0.766 33 H 0.180 0.820 34 H 0.106 0.894 35 H 0.132 0.868 36 H 0.120 0.880 37 H 0.110 0.890 38 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -6.624 7.134 -14.767 17.687 hybrid contribution 1.575 -0.439 0.511 1.713 sum -5.049 6.695 -14.256 16.539 Atomic orbital electron populations 1.21667 0.97077 0.99092 1.00177 1.21773 0.93653 0.99114 1.01273 1.18384 0.93768 0.89120 0.81062 0.98343 1.21574 0.91232 1.39049 1.06800 0.91117 1.25773 1.03376 0.94300 0.94952 1.70056 1.37059 1.38251 1.09889 0.85309 0.79002 0.77859 0.78209 1.18429 1.21056 1.20362 1.46133 1.15223 1.56427 1.17642 1.17531 0.82027 0.78146 0.86455 1.90745 1.52293 1.61811 1.40471 1.20145 0.95587 1.14381 0.89368 1.41992 1.16004 1.44156 1.10591 0.73296 1.22702 0.92455 0.97813 0.96031 1.20967 0.99762 1.09810 0.94369 1.19317 0.92251 0.99651 0.95690 1.20457 0.93862 0.98527 1.00578 1.23064 0.93319 1.02285 1.00106 1.22970 1.03774 0.93242 1.00631 0.95440 0.94130 0.93572 0.94163 0.90835 0.92545 0.77027 0.76596 0.81958 0.89435 0.86799 0.87962 0.89012 0.88312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.74 8.52 71.98 0.61 -5.13 16 2 C -0.12 -5.99 5.45 30.59 0.17 -5.82 16 3 C 0.28 14.59 2.24 44.25 0.10 14.69 16 4 H 0.00 -0.08 7.57 -2.39 -0.02 -0.10 16 5 C -0.55 -29.04 8.73 25.60 0.22 -28.82 16 6 H 0.07 3.49 7.74 -2.91 -0.02 3.47 16 7 C 0.02 0.87 5.29 84.65 0.45 1.32 16 8 N -0.91 -52.46 11.29 21.45 0.24 -52.22 16 9 Si 0.97 41.90 29.54 68.60 2.03 43.92 16 10 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 11 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 12 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 13 N -0.71 -30.02 5.01 -450.07 -2.26 -32.28 16 14 C 0.57 24.35 6.36 86.45 0.55 24.90 16 15 O -0.57 -28.71 12.03 -4.33 -0.05 -28.76 16 16 C -0.08 -2.76 7.06 40.35 0.28 -2.47 16 17 N -0.53 -12.26 5.99 -183.62 -1.10 -13.36 16 18 H 0.43 7.70 8.19 -92.71 -0.76 6.94 16 19 C 0.05 0.82 11.89 83.48 0.99 1.82 16 20 C -0.23 -4.98 10.15 22.01 0.22 -4.76 16 21 C -0.06 -1.86 5.87 -19.56 -0.11 -1.98 16 22 C -0.12 -3.65 5.61 -11.54 -0.06 -3.71 16 23 C -0.15 -3.39 10.04 30.62 0.31 -3.08 16 24 C -0.17 -4.38 10.24 30.62 0.31 -4.06 16 25 H 0.03 1.37 7.85 -2.39 -0.02 1.35 16 26 H 0.04 1.86 5.66 -2.39 -0.01 1.85 16 27 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 28 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.07 4.11 5.95 -2.39 -0.01 4.09 16 30 H 0.27 14.37 8.31 -92.71 -0.77 13.60 16 31 H 0.40 14.02 7.67 -92.71 -0.71 13.31 16 32 H 0.22 1.61 8.06 -2.91 -0.02 1.59 16 33 H 0.16 2.67 7.25 -2.91 -0.02 2.65 16 34 H 0.09 3.42 6.67 -2.39 -0.02 3.40 16 35 H 0.11 2.05 7.03 -2.39 -0.02 2.03 16 36 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 37 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 38 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 Total: -1.00 -70.15 311.27 2.52 -67.63 By element: Atomic # 1 Polarization: 32.57 SS G_CDS: -0.38 Total: 32.18 kcal Atomic # 6 Polarization: -21.16 SS G_CDS: 4.04 Total: -17.12 kcal Atomic # 7 Polarization: -94.75 SS G_CDS: -3.11 Total: -97.86 kcal Atomic # 8 Polarization: -28.71 SS G_CDS: -0.05 Total: -28.76 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.92 kcal Total: -70.15 2.52 -67.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457731643.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.692 kcal (2) G-P(sol) polarization free energy of solvation -70.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds