Wall clock time and date at job start Mon Mar 30 2020 06:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86796 * 120.00123 * 2 1 4 4 H 1.48506 * 109.46910 * 239.99894 * 3 2 1 5 5 H 1.48490 * 109.47449 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46949 * 120.00133 * 3 2 1 7 7 C 1.37882 * 119.99772 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99965 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99940 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47319 * 180.02562 * 9 7 2 11 11 N 1.46500 * 109.47253 * 180.02562 * 10 9 7 12 12 C 1.34774 * 119.99981 * 179.97438 * 11 10 9 13 13 O 1.21636 * 119.99848 * 359.97438 * 12 11 10 14 14 C 1.47262 * 120.00164 * 179.97438 * 12 11 10 15 15 C 1.46681 * 126.94235 * 359.97438 * 14 12 11 16 16 C 1.34487 * 106.33434 * 180.02562 * 15 14 12 17 17 N 1.36442 * 108.85726 * 0.02562 * 16 15 14 18 18 H 0.96996 * 124.85715 * 180.02562 * 17 16 15 19 19 C 1.34665 * 110.29898 * 359.97438 * 17 16 15 20 20 C 1.50698 * 125.80555 * 180.26090 * 19 17 16 21 21 C 1.53786 * 113.61022 * 37.19543 * 20 19 17 22 22 C 1.53777 * 87.08239 * 220.01630 * 21 20 19 23 23 C 1.53778 * 113.61569 * 299.70455 * 20 19 17 24 24 H 0.97001 * 119.99835 * 0.02562 * 1 2 3 25 25 H 1.09007 * 109.47021 * 59.99856 * 9 7 2 26 26 H 1.09004 * 109.47500 * 300.00247 * 9 7 2 27 27 H 1.08999 * 109.47460 * 59.99612 * 10 9 7 28 28 H 1.08999 * 109.46846 * 300.00002 * 10 9 7 29 29 H 0.96996 * 120.00127 * 359.97438 * 11 10 9 30 30 H 1.08007 * 126.83564 * 359.97438 * 15 14 12 31 31 H 1.08005 * 125.57128 * 179.97438 * 16 15 14 32 32 H 1.08991 * 112.85076 * 168.49802 * 20 19 17 33 33 H 1.09006 * 113.61300 * 334.56987 * 21 20 19 34 34 H 1.09004 * 113.61119 * 105.46813 * 21 20 19 35 35 H 1.08996 * 113.61707 * 270.88643 * 22 21 20 36 36 H 1.08997 * 113.61405 * 139.97855 * 22 21 20 37 37 H 1.09001 * 113.60772 * 254.52547 * 23 20 19 38 38 H 1.08993 * 113.61702 * 25.33914 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0017 10 6 2.2451 -3.6622 0.0027 11 7 1.5125 -4.9308 0.0033 12 6 2.1863 -6.0980 0.0037 13 8 3.4026 -6.0981 0.0031 14 6 1.4499 -7.3733 0.0048 15 6 -0.0061 -7.5506 0.0060 16 6 -0.2256 -8.8774 0.0073 17 7 0.9763 -9.5233 0.0075 18 1 1.0879 -10.4868 0.0079 19 6 1.9856 -8.6318 0.0058 20 6 3.4555 -8.9643 -0.0001 21 6 3.8056 -10.1932 -0.8559 22 6 4.7938 -10.5869 0.2546 23 6 3.9066 -9.7838 1.2204 24 1 -0.4850 0.8401 -0.0004 25 1 0.6239 -2.5575 -0.8881 26 1 0.6245 -2.5563 0.8920 27 1 2.8718 -3.6037 0.8926 28 1 2.8717 -3.6052 -0.8873 29 1 0.5425 -4.9308 0.0033 30 1 -0.7534 -6.7707 0.0067 31 1 -1.1949 -9.3539 0.0088 32 1 4.0847 -8.0973 -0.2008 33 1 2.9786 -10.8936 -0.9730 34 1 4.2877 -9.9439 -1.8012 35 1 5.7898 -10.1642 0.1227 36 1 4.8111 -11.6563 0.4646 37 1 4.4703 -9.2040 1.9513 38 1 3.1071 -10.3711 1.6717 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000487023508.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:37 Heat of formation + Delta-G solvation = 8.554349 kcal Electronic energy + Delta-G solvation = -18967.852570 eV Core-core repulsion = 16003.861454 eV Total energy + Delta-G solvation = -2963.991116 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.41730 -38.54194 -38.29444 -34.66712 -32.75524 -31.13999 -29.76044 -29.28694 -25.81611 -25.49863 -24.56158 -22.25486 -21.06590 -20.58286 -19.50031 -19.10054 -17.90492 -16.33534 -15.66067 -15.60868 -14.92351 -14.88025 -14.62356 -14.39026 -14.12628 -13.17803 -13.06035 -12.77745 -12.72043 -12.68270 -12.35123 -12.24381 -12.18933 -11.12459 -10.96247 -10.91495 -10.62379 -10.59633 -10.44949 -10.22005 -9.65941 -9.35643 -9.07948 -8.81536 -8.43377 -8.27694 -8.03115 -6.03157 -4.05573 1.90039 2.48324 3.10481 3.35469 3.38900 3.42353 3.96267 4.05823 4.40325 4.47562 4.50395 4.52659 4.81523 4.97939 5.03988 5.33653 5.37289 5.39928 5.45630 5.49683 5.67533 5.72244 5.83767 5.84923 5.95339 6.16241 6.37293 6.47590 6.49741 6.80209 6.85971 6.99535 7.14146 7.41225 7.61586 7.71547 7.96028 8.25923 8.38034 8.91619 9.01143 9.58672 11.08530 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.033686 B = 0.003631 C = 0.003334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.999095 B = 7708.751467 C = 8395.326699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.897 3.103 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.521 4.521 8 H 0.059 0.941 9 C 0.012 3.988 10 C 0.124 3.876 11 N -0.717 5.717 12 C 0.581 3.419 13 O -0.563 6.563 14 C -0.223 4.223 15 C -0.166 4.166 16 C -0.022 4.022 17 N -0.553 5.553 18 H 0.411 0.589 19 C 0.111 3.889 20 C -0.054 4.054 21 C -0.139 4.139 22 C -0.140 4.140 23 C -0.133 4.133 24 H 0.262 0.738 25 H 0.022 0.978 26 H 0.022 0.978 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.397 0.603 30 H 0.146 0.854 31 H 0.167 0.833 32 H 0.139 0.861 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.085 0.915 36 H 0.067 0.933 37 H 0.075 0.925 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.274 -23.274 0.177 23.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.559 4.559 8 H 0.077 0.923 9 C -0.025 4.025 10 C 0.001 3.999 11 N -0.366 5.366 12 C 0.369 3.631 13 O -0.444 6.444 14 C -0.233 4.233 15 C -0.191 4.191 16 C -0.149 4.149 17 N -0.148 5.148 18 H 0.247 0.753 19 C -0.006 4.006 20 C -0.073 4.073 21 C -0.177 4.177 22 C -0.177 4.177 23 C -0.171 4.171 24 H 0.071 0.929 25 H 0.040 0.960 26 H 0.040 0.960 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.230 0.770 30 H 0.164 0.836 31 H 0.185 0.815 32 H 0.157 0.843 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.104 0.896 36 H 0.085 0.915 37 H 0.094 0.906 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.952 -23.229 0.178 23.311 hybrid contribution -0.334 0.541 0.006 0.636 sum 1.618 -22.688 0.184 22.746 Atomic orbital electron populations 1.69951 1.06079 1.26884 1.50484 1.24996 0.94886 0.99353 0.95078 0.86577 0.79510 0.82711 0.78757 1.20132 1.21296 1.20126 1.21039 0.93218 0.90463 1.51206 0.92309 1.19317 0.94248 0.91125 0.97807 1.21675 0.95977 0.81593 1.00638 1.46096 1.10425 1.06213 1.73845 1.17382 0.86606 0.83014 0.76058 1.90655 1.13581 1.87680 1.52498 1.20350 0.93267 0.92388 1.17259 1.22120 0.94295 0.95438 1.07225 1.21661 0.88970 0.92936 1.11300 1.41464 1.05594 1.08736 1.59054 0.75302 1.20025 0.90083 0.88182 1.02343 1.21617 0.89409 0.99290 0.96948 1.22997 0.99176 0.97043 0.98446 1.22813 0.98519 0.99960 0.96406 1.22958 0.99342 0.98108 0.96701 0.92854 0.95961 0.95972 0.92679 0.92687 0.76968 0.83603 0.81534 0.84301 0.91019 0.90747 0.89608 0.91460 0.90639 0.90754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.61 13.29 55.43 0.74 -25.87 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.52 -14.79 9.11 -34.44 -0.31 -15.11 16 8 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 9 C 0.01 0.32 5.09 -27.89 -0.14 0.18 16 10 C 0.12 2.78 5.61 -4.04 -0.02 2.76 16 11 N -0.72 -13.86 5.55 -61.44 -0.34 -14.20 16 12 C 0.58 11.15 7.81 -12.59 -0.10 11.05 16 13 O -0.56 -12.16 14.61 5.25 0.08 -12.09 16 14 C -0.22 -3.49 6.29 -103.35 -0.65 -4.14 16 15 C -0.17 -2.12 10.56 -37.50 -0.40 -2.52 16 16 C -0.02 -0.21 11.89 -16.83 -0.20 -0.41 16 17 N -0.55 -5.31 5.72 -9.10 -0.05 -5.36 16 18 H 0.41 2.60 8.20 -40.82 -0.33 2.27 16 19 C 0.11 1.45 6.23 -81.88 -0.51 0.94 16 20 C -0.05 -0.65 3.93 -90.96 -0.36 -1.00 16 21 C -0.14 -1.24 7.62 -25.92 -0.20 -1.44 16 22 C -0.14 -1.13 8.08 -25.92 -0.21 -1.34 16 23 C -0.13 -1.30 7.63 -25.92 -0.20 -1.50 16 24 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 25 H 0.02 0.59 8.14 -51.92 -0.42 0.17 16 26 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.05 1.28 8.14 -51.93 -0.42 0.86 16 28 H 0.05 1.28 8.14 -51.93 -0.42 0.85 16 29 H 0.40 6.84 7.60 -40.82 -0.31 6.53 16 30 H 0.15 1.67 7.70 -52.48 -0.40 1.26 16 31 H 0.17 1.06 8.06 -52.48 -0.42 0.64 16 32 H 0.14 2.10 5.94 -51.93 -0.31 1.79 16 33 H 0.07 0.52 7.20 -51.93 -0.37 0.15 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.07 0.64 8.09 -51.93 -0.42 0.22 16 LS Contribution 319.29 15.07 4.81 4.81 Total: -1.00 -33.04 319.29 -8.68 -41.71 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -5.50 Total: 5.26 kcal Atomic # 6 Polarization: -7.58 SS G_CDS: -3.39 Total: -10.98 kcal Atomic # 7 Polarization: -45.78 SS G_CDS: 0.34 Total: -45.44 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: 0.08 Total: -12.09 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -33.04 -8.68 -41.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000487023508.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.269 kcal (2) G-P(sol) polarization free energy of solvation -33.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds