Wall clock time and date at job start Mon Mar 30 2020 06:25:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86796 * 120.00123 * 2 1 4 4 H 1.48506 * 109.46910 * 239.99894 * 3 2 1 5 5 H 1.48490 * 109.47449 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46949 * 120.00133 * 3 2 1 7 7 C 1.37882 * 119.99772 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99965 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99940 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47319 * 180.02562 * 9 7 2 11 11 N 1.46500 * 109.47253 * 180.02562 * 10 9 7 12 12 C 1.34774 * 119.99981 * 179.97438 * 11 10 9 13 13 O 1.21636 * 119.99848 * 359.97438 * 12 11 10 14 14 C 1.47262 * 120.00164 * 179.97438 * 12 11 10 15 15 C 1.46681 * 126.94235 * 359.97438 * 14 12 11 16 16 C 1.34487 * 106.33434 * 180.02562 * 15 14 12 17 17 N 1.36442 * 108.85726 * 0.02562 * 16 15 14 18 18 H 0.96996 * 124.85715 * 180.02562 * 17 16 15 19 19 C 1.34665 * 110.29898 * 359.97438 * 17 16 15 20 20 C 1.50698 * 125.80555 * 180.26090 * 19 17 16 21 21 C 1.53786 * 113.61022 * 37.19543 * 20 19 17 22 22 C 1.53777 * 87.08239 * 220.01630 * 21 20 19 23 23 C 1.53778 * 113.61569 * 299.70455 * 20 19 17 24 24 H 0.97001 * 119.99835 * 0.02562 * 1 2 3 25 25 H 1.09007 * 109.47021 * 59.99856 * 9 7 2 26 26 H 1.09004 * 109.47500 * 300.00247 * 9 7 2 27 27 H 1.08999 * 109.47460 * 59.99612 * 10 9 7 28 28 H 1.08999 * 109.46846 * 300.00002 * 10 9 7 29 29 H 0.96996 * 120.00127 * 359.97438 * 11 10 9 30 30 H 1.08007 * 126.83564 * 359.97438 * 15 14 12 31 31 H 1.08005 * 125.57128 * 179.97438 * 16 15 14 32 32 H 1.08991 * 112.85076 * 168.49802 * 20 19 17 33 33 H 1.09006 * 113.61300 * 334.56987 * 21 20 19 34 34 H 1.09004 * 113.61119 * 105.46813 * 21 20 19 35 35 H 1.08996 * 113.61707 * 270.88643 * 22 21 20 36 36 H 1.08997 * 113.61405 * 139.97855 * 22 21 20 37 37 H 1.09001 * 113.60772 * 254.52547 * 23 20 19 38 38 H 1.08993 * 113.61702 * 25.33914 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0017 10 6 2.2451 -3.6622 0.0027 11 7 1.5125 -4.9308 0.0033 12 6 2.1863 -6.0980 0.0037 13 8 3.4026 -6.0981 0.0031 14 6 1.4499 -7.3733 0.0048 15 6 -0.0061 -7.5506 0.0060 16 6 -0.2256 -8.8774 0.0073 17 7 0.9763 -9.5233 0.0075 18 1 1.0879 -10.4868 0.0079 19 6 1.9856 -8.6318 0.0058 20 6 3.4555 -8.9643 -0.0001 21 6 3.8056 -10.1932 -0.8559 22 6 4.7938 -10.5869 0.2546 23 6 3.9066 -9.7838 1.2204 24 1 -0.4850 0.8401 -0.0004 25 1 0.6239 -2.5575 -0.8881 26 1 0.6245 -2.5563 0.8920 27 1 2.8718 -3.6037 0.8926 28 1 2.8717 -3.6052 -0.8873 29 1 0.5425 -4.9308 0.0033 30 1 -0.7534 -6.7707 0.0067 31 1 -1.1949 -9.3539 0.0088 32 1 4.0847 -8.0973 -0.2008 33 1 2.9786 -10.8936 -0.9730 34 1 4.2877 -9.9439 -1.8012 35 1 5.7898 -10.1642 0.1227 36 1 4.8111 -11.6563 0.4646 37 1 4.4703 -9.2040 1.9513 38 1 3.1071 -10.3711 1.6717 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000487023508.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:36 Heat of formation + Delta-G solvation = -13.056123 kcal Electronic energy + Delta-G solvation = -18968.789671 eV Core-core repulsion = 16003.861454 eV Total energy + Delta-G solvation = -2964.928217 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.36787 -40.05114 -39.10485 -36.51263 -34.78058 -32.40570 -31.06113 -30.65042 -27.07724 -26.55031 -25.86883 -23.76485 -22.60540 -21.71910 -20.49540 -20.31229 -18.84147 -18.43201 -17.01245 -16.66144 -16.42126 -16.37718 -16.28702 -15.40412 -15.34736 -14.60437 -14.47732 -14.26884 -14.06178 -13.60191 -13.42563 -13.24492 -13.17530 -13.04001 -12.91301 -12.52635 -12.22048 -11.73318 -11.59480 -11.46909 -11.38439 -11.26422 -10.70919 -10.59506 -10.05880 -9.67848 -9.07193 -8.23291 -6.34308 0.75427 1.41765 1.44912 1.52852 1.56837 2.17649 2.40363 2.60113 2.67410 3.10890 3.62030 3.70425 3.78637 4.01172 4.08318 4.21964 4.32105 4.50043 4.52749 4.56302 4.69511 4.78218 4.85007 4.86248 5.00985 5.04489 5.06933 5.11077 5.29720 5.36016 5.50370 5.58083 5.58491 5.78862 5.82015 6.02258 6.16965 6.65859 6.77412 6.80552 7.34740 7.41296 8.88666 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.033686 B = 0.003631 C = 0.003334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.999095 B = 7708.751467 C = 8395.326699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.007 3.993 3 Si 0.968 3.032 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.268 1.268 7 C -0.549 4.549 8 H 0.059 0.941 9 C 0.025 3.975 10 C 0.143 3.857 11 N -0.716 5.716 12 C 0.576 3.424 13 O -0.597 6.597 14 C -0.269 4.269 15 C -0.193 4.193 16 C 0.006 3.994 17 N -0.533 5.533 18 H 0.431 0.569 19 C 0.118 3.882 20 C -0.072 4.072 21 C -0.128 4.128 22 C -0.129 4.129 23 C -0.130 4.130 24 H 0.266 0.734 25 H 0.007 0.993 26 H 0.007 0.993 27 H 0.044 0.956 28 H 0.044 0.956 29 H 0.406 0.594 30 H 0.151 0.849 31 H 0.213 0.787 32 H 0.099 0.901 33 H 0.097 0.903 34 H 0.069 0.931 35 H 0.080 0.920 36 H 0.093 0.907 37 H 0.059 0.941 38 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.698 -25.515 0.188 25.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.192 4.192 3 Si 0.792 3.208 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.193 1.193 7 C -0.587 4.587 8 H 0.077 0.923 9 C -0.013 4.013 10 C 0.019 3.981 11 N -0.366 5.366 12 C 0.367 3.633 13 O -0.481 6.481 14 C -0.279 4.279 15 C -0.217 4.217 16 C -0.121 4.121 17 N -0.129 5.129 18 H 0.272 0.728 19 C -0.002 4.002 20 C -0.091 4.091 21 C -0.166 4.166 22 C -0.167 4.167 23 C -0.168 4.168 24 H 0.075 0.925 25 H 0.025 0.975 26 H 0.025 0.975 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.242 0.758 30 H 0.169 0.831 31 H 0.230 0.770 32 H 0.117 0.883 33 H 0.115 0.885 34 H 0.087 0.913 35 H 0.098 0.902 36 H 0.111 0.889 37 H 0.078 0.922 38 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.354 -25.517 0.187 25.553 hybrid contribution -0.189 1.159 0.006 1.174 sum 1.166 -24.358 0.193 24.386 Atomic orbital electron populations 1.70061 1.07597 1.28108 1.50874 1.25906 0.95836 1.03176 0.94301 0.85463 0.78287 0.77919 0.79165 1.19290 1.20423 1.19282 1.21445 0.93594 0.91915 1.51794 0.92289 1.19115 0.94178 0.91791 0.96198 1.21192 0.95026 0.82281 0.99551 1.45930 1.10786 1.05405 1.74443 1.17992 0.86466 0.83997 0.74878 1.90630 1.15152 1.88268 1.54047 1.20237 0.94992 0.91483 1.21200 1.22294 0.92863 0.97351 1.09178 1.22276 0.90323 0.91879 1.07632 1.41436 1.04708 1.09483 1.57322 0.72837 1.20087 0.91072 0.88057 1.00940 1.21588 0.88444 0.99329 0.99786 1.23009 1.00081 0.95547 0.97963 1.22771 0.97768 1.01134 0.94989 1.22983 1.00051 0.97876 0.95845 0.92485 0.97451 0.97464 0.93765 0.93764 0.75837 0.83149 0.77038 0.88285 0.88456 0.91267 0.90168 0.88886 0.92240 0.88881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.79 13.29 21.45 0.28 -55.51 16 2 C 0.01 0.38 5.46 84.66 0.46 0.84 16 3 Si 0.97 44.69 29.54 68.60 2.03 46.72 16 4 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 5 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 6 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 7 C -0.55 -31.97 9.11 25.60 0.23 -31.73 16 8 H 0.06 3.35 7.74 -2.91 -0.02 3.32 16 9 C 0.02 1.32 5.09 29.85 0.15 1.47 16 10 C 0.14 6.78 5.61 86.38 0.48 7.27 16 11 N -0.72 -29.13 5.55 -466.53 -2.59 -31.72 16 12 C 0.58 23.22 7.81 86.62 0.68 23.89 16 13 O -0.60 -27.49 14.61 -4.15 -0.06 -27.55 16 14 C -0.27 -8.51 6.29 -19.04 -0.12 -8.63 16 15 C -0.19 -4.70 10.56 23.62 0.25 -4.45 16 16 C 0.01 0.10 11.89 83.12 0.99 1.09 16 17 N -0.53 -8.42 5.72 -182.72 -1.04 -9.46 16 18 H 0.43 3.43 8.20 -92.71 -0.76 2.67 16 19 C 0.12 2.95 6.23 41.78 0.26 3.21 16 20 C -0.07 -1.72 3.93 -11.01 -0.04 -1.76 16 21 C -0.13 -2.04 7.62 31.12 0.24 -1.80 16 22 C -0.13 -1.83 8.08 31.12 0.25 -1.58 16 23 C -0.13 -2.38 7.63 31.12 0.24 -2.14 16 24 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 25 H 0.01 0.40 8.14 -2.38 -0.02 0.38 16 26 H 0.01 0.39 8.14 -2.38 -0.02 0.37 16 27 H 0.04 2.17 8.14 -2.39 -0.02 2.15 16 28 H 0.04 2.16 8.14 -2.39 -0.02 2.15 16 29 H 0.41 14.71 7.60 -92.71 -0.70 14.01 16 30 H 0.15 3.36 7.70 -2.91 -0.02 3.34 16 31 H 0.21 1.49 8.06 -2.91 -0.02 1.47 16 32 H 0.10 3.21 5.94 -2.39 -0.01 3.20 16 33 H 0.10 1.03 7.20 -2.38 -0.02 1.02 16 34 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 35 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.09 1.34 8.09 -2.39 -0.02 1.32 16 Total: -1.00 -74.29 319.29 2.30 -71.99 By element: Atomic # 1 Polarization: 20.23 SS G_CDS: -0.39 Total: 19.84 kcal Atomic # 6 Polarization: -18.37 SS G_CDS: 4.07 Total: -14.31 kcal Atomic # 7 Polarization: -93.34 SS G_CDS: -3.35 Total: -96.69 kcal Atomic # 8 Polarization: -27.49 SS G_CDS: -0.06 Total: -27.55 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -74.29 2.30 -71.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000487023508.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.934 kcal (2) G-P(sol) polarization free energy of solvation -74.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds