Wall clock time and date at job start Mon Mar 30 2020 06:34:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50693 * 109.47368 * 2 1 4 4 C 1.38142 * 119.96407 * 264.72836 * 3 2 1 5 5 C 1.38847 * 119.92468 * 179.72688 * 4 3 2 6 6 N 1.39950 * 120.06432 * 180.24990 * 5 4 3 7 7 C 1.34776 * 120.00202 * 33.46586 * 6 5 4 8 8 O 1.21583 * 119.99802 * 5.30882 * 7 6 5 9 9 N 1.34778 * 119.99722 * 185.31253 * 7 6 5 10 10 C 1.46498 * 119.99321 * 180.02562 * 9 7 6 11 11 C 1.50704 * 109.46712 * 179.97438 * 10 9 7 12 12 H 1.07994 * 120.00032 * 359.97438 * 11 10 9 13 13 C 1.37876 * 119.99938 * 180.02562 * 11 10 9 14 14 N 1.31522 * 119.99889 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 120.00059 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.46991 * 359.97438 * 15 13 11 17 17 H 1.48503 * 109.47247 * 120.00046 * 15 13 11 18 18 H 1.48502 * 109.46833 * 239.99506 * 15 13 11 19 19 C 1.38887 * 119.86441 * 0.56643 * 5 4 3 20 20 C 1.38092 * 119.92948 * 359.70507 * 19 5 4 21 21 C 1.38259 * 119.96643 * 85.00037 * 3 2 1 22 22 C 1.50700 * 119.93247 * 0.02562 * 21 3 2 23 23 H 1.08997 * 109.47576 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.46778 * 300.00412 * 1 2 3 25 25 H 1.08998 * 109.47338 * 59.99692 * 1 2 3 26 26 H 1.09007 * 109.47215 * 120.00052 * 2 1 3 27 27 H 1.09002 * 109.46778 * 239.99587 * 2 1 3 28 28 H 1.07994 * 120.03536 * 359.97438 * 4 3 2 29 29 H 0.96998 * 119.99763 * 213.46522 * 6 5 4 30 30 H 0.96995 * 120.00395 * 359.97438 * 9 7 6 31 31 H 1.09000 * 109.46976 * 299.99189 * 10 9 7 32 32 H 1.08996 * 109.47497 * 59.99869 * 10 9 7 33 33 H 0.97001 * 119.99512 * 180.02562 * 14 13 11 34 34 H 1.07994 * 120.03577 * 179.68202 * 19 5 4 35 35 H 1.07994 * 119.96685 * 179.97438 * 20 19 5 36 36 H 1.08994 * 109.47424 * 89.99618 * 22 21 3 37 37 H 1.08993 * 109.47225 * 210.00132 * 22 21 3 38 38 H 1.09003 * 109.46652 * 329.99584 * 22 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.3661 2.0346 -1.1917 5 6 2.8235 3.3455 -1.1913 6 7 3.1574 3.9720 -2.3974 7 6 2.4768 3.6749 -3.5221 8 8 1.5119 2.9369 -3.4717 9 7 2.8659 4.1958 -4.7027 10 6 2.1257 3.8733 -5.9251 11 6 2.7596 4.5779 -7.0967 12 1 3.6267 5.2037 -6.9458 13 6 2.2318 4.4245 -8.3612 14 7 1.1755 3.6628 -8.5449 15 14 3.0171 5.2984 -9.8135 16 1 4.1835 6.0886 -9.3439 17 1 3.4678 4.2946 -10.8107 18 1 2.0239 6.2073 -10.4402 19 6 2.9552 4.0317 0.0090 20 6 2.6253 3.4106 1.1975 21 6 2.1642 2.1066 1.1932 22 6 1.8056 1.4317 2.4921 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 1.8934 -0.5139 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 2.2674 1.4967 -2.1230 29 1 3.8786 4.6200 -2.4239 30 1 3.6355 4.7848 -4.7428 31 1 2.1507 2.7963 -6.0915 32 1 1.0914 4.2009 -5.8207 33 1 0.8045 3.5546 -9.4346 34 1 3.3156 5.0497 0.0130 35 1 2.7279 3.9434 2.1312 36 1 2.6844 0.9280 2.8945 37 1 1.4564 2.1784 3.2051 38 1 1.0166 0.7006 2.3158 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000488558120.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:41 Heat of formation + Delta-G solvation = -24.018132 kcal Electronic energy + Delta-G solvation = -18991.211842 eV Core-core repulsion = 16025.808277 eV Total energy + Delta-G solvation = -2965.403565 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.27446 -38.75102 -35.36357 -34.19466 -33.38541 -32.43414 -31.18425 -29.41616 -27.47723 -25.90810 -23.89873 -22.85333 -21.87223 -20.54521 -20.04681 -18.21222 -17.03974 -16.07508 -15.64659 -15.38819 -14.89385 -14.61445 -14.33930 -13.95092 -13.66851 -13.52672 -13.26564 -13.06415 -12.57719 -12.43735 -12.03978 -11.99855 -11.89649 -11.66568 -11.42815 -10.96098 -10.94040 -10.84600 -10.67365 -10.32794 -9.84454 -9.45602 -9.39485 -8.77235 -8.56182 -8.03172 -7.59782 -6.18572 -4.25491 1.46022 1.58225 3.19137 3.22481 3.30311 3.33745 3.63849 4.06200 4.30273 4.77548 4.87097 4.98719 5.10200 5.17657 5.17839 5.28401 5.42257 5.42858 5.58143 5.60291 5.70595 5.84736 5.89218 5.96382 6.10625 6.20629 6.30822 6.48950 6.54045 6.74353 6.87981 7.06293 7.30534 7.40267 7.49688 7.50910 7.82321 7.97625 8.68175 8.83142 9.19889 9.41954 10.91643 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.037676 B = 0.003692 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.009657 B = 7581.477299 C = 8183.181232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.083 4.083 3 C -0.063 4.063 4 C -0.116 4.116 5 C 0.180 3.820 6 N -0.696 5.696 7 C 0.690 3.310 8 O -0.582 6.582 9 N -0.723 5.723 10 C 0.265 3.735 11 C -0.543 4.543 12 H 0.064 0.936 13 C 0.064 3.936 14 N -0.884 5.884 15 Si 0.905 3.095 16 H -0.272 1.272 17 H -0.282 1.282 18 H -0.282 1.282 19 C -0.159 4.159 20 C -0.099 4.099 21 C -0.115 4.115 22 C -0.111 4.111 23 H 0.055 0.945 24 H 0.054 0.946 25 H 0.061 0.939 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.138 0.862 29 H 0.402 0.598 30 H 0.388 0.612 31 H 0.027 0.973 32 H 0.027 0.973 33 H 0.266 0.734 34 H 0.121 0.879 35 H 0.120 0.880 36 H 0.064 0.936 37 H 0.061 0.939 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.222 -2.479 19.562 20.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.121 4.121 3 C -0.064 4.064 4 C -0.137 4.137 5 C 0.084 3.916 6 N -0.344 5.344 7 C 0.390 3.610 8 O -0.459 6.459 9 N -0.374 5.374 10 C 0.145 3.855 11 C -0.581 4.581 12 H 0.082 0.918 13 C -0.140 4.140 14 N -0.522 5.522 15 Si 0.732 3.268 16 H -0.196 1.196 17 H -0.208 1.208 18 H -0.208 1.208 19 C -0.180 4.180 20 C -0.118 4.118 21 C -0.116 4.116 22 C -0.168 4.168 23 H 0.074 0.926 24 H 0.073 0.927 25 H 0.080 0.920 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.155 0.845 29 H 0.237 0.763 30 H 0.221 0.779 31 H 0.045 0.955 32 H 0.045 0.955 33 H 0.075 0.925 34 H 0.139 0.861 35 H 0.138 0.862 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.187 -3.218 19.288 19.813 hybrid contribution 1.084 1.241 -1.013 1.934 sum 4.271 -1.977 18.275 18.872 Atomic orbital electron populations 1.21758 0.94718 1.01484 1.02559 1.20519 0.96315 0.92693 1.02537 1.19597 0.98592 0.96134 0.92080 1.21133 1.00706 0.93236 0.98592 1.17516 0.98163 0.91361 0.84603 1.42849 1.38408 1.46460 1.06699 1.16173 0.82734 0.81660 0.80458 1.90894 1.28622 1.41066 1.85329 1.45781 1.34013 1.50875 1.06752 1.19053 0.91768 0.96740 0.77978 1.21244 1.14537 1.30334 0.92021 0.91836 1.24950 0.94878 0.95222 0.98974 1.69992 1.21820 1.37429 1.22941 0.86343 0.79165 0.79315 0.81968 1.19649 1.20769 1.20784 1.20788 1.06066 0.99608 0.91526 1.20679 0.99562 0.94398 0.97142 1.19618 1.02492 0.94747 0.94721 1.20778 1.01432 1.00380 0.94199 0.92593 0.92662 0.91959 0.91140 0.91050 0.84475 0.76323 0.77937 0.95495 0.95532 0.92462 0.86102 0.86181 0.91741 0.92047 0.91384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.70 37.16 0.36 -1.31 16 2 C -0.08 -0.97 5.37 -27.89 -0.15 -1.12 16 3 C -0.06 -0.88 5.13 -104.65 -0.54 -1.41 16 4 C -0.12 -1.93 8.28 -39.39 -0.33 -2.25 16 5 C 0.18 2.83 6.28 -83.69 -0.53 2.30 16 6 N -0.70 -11.08 5.35 -14.22 -0.08 -11.16 16 7 C 0.69 14.32 8.30 -86.92 -0.72 13.60 16 8 O -0.58 -14.36 14.04 5.29 0.07 -14.28 16 9 N -0.72 -15.31 5.55 -66.41 -0.37 -15.68 16 10 C 0.27 7.04 5.43 -5.19 -0.03 7.02 16 11 C -0.54 -14.67 9.28 -34.44 -0.32 -14.99 16 12 H 0.06 1.60 7.60 -52.49 -0.40 1.21 16 13 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 14 N -0.88 -25.99 13.29 55.43 0.74 -25.25 16 15 Si 0.90 20.77 29.54 -169.99 -5.02 15.74 16 16 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 17 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 18 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 19 C -0.16 -2.05 9.96 -39.39 -0.39 -2.44 16 20 C -0.10 -1.17 9.69 -39.61 -0.38 -1.55 16 21 C -0.11 -1.39 5.88 -104.59 -0.62 -2.01 16 22 C -0.11 -1.00 9.21 36.01 0.33 -0.67 16 23 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.05 0.58 6.91 -51.93 -0.36 0.22 16 25 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 26 H 0.07 0.68 6.98 -51.93 -0.36 0.32 16 27 H 0.07 0.85 8.05 -51.93 -0.42 0.44 16 28 H 0.14 2.62 6.43 -52.49 -0.34 2.28 16 29 H 0.40 4.91 8.83 -40.82 -0.36 4.55 16 30 H 0.39 6.95 8.34 -40.82 -0.34 6.61 16 31 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 34 H 0.12 1.28 8.06 -52.49 -0.42 0.85 16 35 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.48 8.08 -51.93 -0.42 0.06 16 38 H 0.07 0.58 5.41 -51.93 -0.28 0.30 16 LS Contribution 318.82 15.07 4.80 4.80 Total: -1.00 -32.28 318.82 -8.63 -40.91 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: -5.37 Total: 8.09 kcal Atomic # 6 Polarization: 0.23 SS G_CDS: -3.40 Total: -3.18 kcal Atomic # 7 Polarization: -52.38 SS G_CDS: 0.29 Total: -52.09 kcal Atomic # 8 Polarization: -14.36 SS G_CDS: 0.07 Total: -14.28 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -32.28 -8.63 -40.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488558120.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.892 kcal (2) G-P(sol) polarization free energy of solvation -32.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds