Wall clock time and date at job start Mon Mar 30 2020 06:34:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50693 * 109.47368 * 2 1 4 4 C 1.38142 * 119.96407 * 264.72836 * 3 2 1 5 5 C 1.38847 * 119.92468 * 179.72688 * 4 3 2 6 6 N 1.39950 * 120.06432 * 180.24990 * 5 4 3 7 7 C 1.34776 * 120.00202 * 33.46586 * 6 5 4 8 8 O 1.21583 * 119.99802 * 5.30882 * 7 6 5 9 9 N 1.34778 * 119.99722 * 185.31253 * 7 6 5 10 10 C 1.46498 * 119.99321 * 180.02562 * 9 7 6 11 11 C 1.50704 * 109.46712 * 179.97438 * 10 9 7 12 12 H 1.07994 * 120.00032 * 359.97438 * 11 10 9 13 13 C 1.37876 * 119.99938 * 180.02562 * 11 10 9 14 14 N 1.31522 * 119.99889 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 120.00059 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.46991 * 359.97438 * 15 13 11 17 17 H 1.48503 * 109.47247 * 120.00046 * 15 13 11 18 18 H 1.48502 * 109.46833 * 239.99506 * 15 13 11 19 19 C 1.38887 * 119.86441 * 0.56643 * 5 4 3 20 20 C 1.38092 * 119.92948 * 359.70507 * 19 5 4 21 21 C 1.38259 * 119.96643 * 85.00037 * 3 2 1 22 22 C 1.50700 * 119.93247 * 0.02562 * 21 3 2 23 23 H 1.08997 * 109.47576 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.46778 * 300.00412 * 1 2 3 25 25 H 1.08998 * 109.47338 * 59.99692 * 1 2 3 26 26 H 1.09007 * 109.47215 * 120.00052 * 2 1 3 27 27 H 1.09002 * 109.46778 * 239.99587 * 2 1 3 28 28 H 1.07994 * 120.03536 * 359.97438 * 4 3 2 29 29 H 0.96998 * 119.99763 * 213.46522 * 6 5 4 30 30 H 0.96995 * 120.00395 * 359.97438 * 9 7 6 31 31 H 1.09000 * 109.46976 * 299.99189 * 10 9 7 32 32 H 1.08996 * 109.47497 * 59.99869 * 10 9 7 33 33 H 0.97001 * 119.99512 * 180.02562 * 14 13 11 34 34 H 1.07994 * 120.03577 * 179.68202 * 19 5 4 35 35 H 1.07994 * 119.96685 * 179.97438 * 20 19 5 36 36 H 1.08994 * 109.47424 * 89.99618 * 22 21 3 37 37 H 1.08993 * 109.47225 * 210.00132 * 22 21 3 38 38 H 1.09003 * 109.46652 * 329.99584 * 22 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.3661 2.0346 -1.1917 5 6 2.8235 3.3455 -1.1913 6 7 3.1574 3.9720 -2.3974 7 6 2.4768 3.6749 -3.5221 8 8 1.5119 2.9369 -3.4717 9 7 2.8659 4.1958 -4.7027 10 6 2.1257 3.8733 -5.9251 11 6 2.7596 4.5779 -7.0967 12 1 3.6267 5.2037 -6.9458 13 6 2.2318 4.4245 -8.3612 14 7 1.1755 3.6628 -8.5449 15 14 3.0171 5.2984 -9.8135 16 1 4.1835 6.0886 -9.3439 17 1 3.4678 4.2946 -10.8107 18 1 2.0239 6.2073 -10.4402 19 6 2.9552 4.0317 0.0090 20 6 2.6253 3.4106 1.1975 21 6 2.1642 2.1066 1.1932 22 6 1.8056 1.4317 2.4921 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 1.8934 -0.5139 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 2.2674 1.4967 -2.1230 29 1 3.8786 4.6200 -2.4239 30 1 3.6355 4.7848 -4.7428 31 1 2.1507 2.7963 -6.0915 32 1 1.0914 4.2009 -5.8207 33 1 0.8045 3.5546 -9.4346 34 1 3.3156 5.0497 0.0130 35 1 2.7279 3.9434 2.1312 36 1 2.6844 0.9280 2.8945 37 1 1.4564 2.1784 3.2051 38 1 1.0166 0.7006 2.3158 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000488558120.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:41 Heat of formation + Delta-G solvation = -45.510796 kcal Electronic energy + Delta-G solvation = -18992.143834 eV Core-core repulsion = 16025.808277 eV Total energy + Delta-G solvation = -2966.335557 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.65679 -40.07646 -36.74542 -36.06105 -34.60947 -34.28235 -32.33178 -30.42847 -29.36054 -27.09882 -25.03304 -24.63232 -23.06539 -21.99922 -21.34282 -19.90425 -18.39121 -17.96108 -16.95188 -16.79974 -16.41751 -16.12467 -15.79243 -15.13955 -15.06630 -14.60353 -14.47051 -14.29085 -14.08910 -14.06410 -13.41653 -13.22701 -12.89876 -12.79689 -12.77377 -12.68142 -12.50053 -12.22711 -11.81762 -11.63914 -11.47236 -11.29165 -10.98748 -10.83779 -9.93194 -9.64042 -8.81913 -8.30606 -6.47345 0.37932 0.50246 1.42656 1.44375 1.57298 1.73120 2.08794 2.37766 2.88021 3.04697 3.37922 3.84637 3.97396 4.18460 4.21471 4.34774 4.48715 4.54433 4.64865 4.67686 4.87627 4.94301 4.98474 5.04379 5.07647 5.19137 5.21095 5.22275 5.35052 5.41444 5.43186 5.50251 5.62543 5.68025 5.80328 5.82503 6.17286 6.20095 6.63800 7.15047 7.23488 7.57576 8.81967 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.037676 B = 0.003692 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.009657 B = 7581.477299 C = 8183.181232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.083 4.083 3 C -0.076 4.076 4 C -0.146 4.146 5 C 0.146 3.854 6 N -0.675 5.675 7 C 0.689 3.311 8 O -0.627 6.627 9 N -0.716 5.716 10 C 0.285 3.715 11 C -0.555 4.555 12 H 0.085 0.915 13 C 0.004 3.996 14 N -0.930 5.930 15 Si 0.988 3.012 16 H -0.253 1.253 17 H -0.279 1.279 18 H -0.279 1.279 19 C -0.150 4.150 20 C -0.096 4.096 21 C -0.110 4.110 22 C -0.111 4.111 23 H 0.074 0.926 24 H 0.068 0.932 25 H 0.028 0.972 26 H 0.099 0.901 27 H 0.056 0.944 28 H 0.096 0.904 29 H 0.422 0.578 30 H 0.407 0.593 31 H -0.012 1.012 32 H -0.013 1.013 33 H 0.269 0.731 34 H 0.149 0.851 35 H 0.158 0.842 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.882 -1.017 21.905 22.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.120 4.120 3 C -0.077 4.077 4 C -0.167 4.167 5 C 0.051 3.949 6 N -0.324 5.324 7 C 0.390 3.610 8 O -0.508 6.508 9 N -0.369 5.369 10 C 0.162 3.838 11 C -0.593 4.593 12 H 0.103 0.897 13 C -0.196 4.196 14 N -0.569 5.569 15 Si 0.810 3.190 16 H -0.176 1.176 17 H -0.204 1.204 18 H -0.204 1.204 19 C -0.171 4.171 20 C -0.115 4.115 21 C -0.111 4.111 22 C -0.167 4.167 23 H 0.093 0.907 24 H 0.087 0.913 25 H 0.047 0.953 26 H 0.117 0.883 27 H 0.075 0.925 28 H 0.114 0.886 29 H 0.260 0.740 30 H 0.243 0.757 31 H 0.006 0.994 32 H 0.005 0.995 33 H 0.078 0.922 34 H 0.167 0.833 35 H 0.176 0.824 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.910 -1.725 21.701 22.316 hybrid contribution 0.538 0.719 -1.570 1.809 sum 5.448 -1.006 20.130 20.879 Atomic orbital electron populations 1.21728 0.94479 1.02429 1.01483 1.20572 0.96463 0.91837 1.03168 1.19853 0.98634 0.97220 0.91943 1.21026 1.03194 0.94237 0.98231 1.17802 1.00381 0.91555 0.85179 1.42458 1.38105 1.46367 1.05454 1.16296 0.82476 0.80950 0.81310 1.90868 1.30857 1.42924 1.86155 1.45328 1.34333 1.51574 1.05670 1.18470 0.90614 0.94303 0.80441 1.21616 1.15107 1.30435 0.92125 0.89697 1.26080 0.95227 0.95813 1.02492 1.70154 1.23643 1.39132 1.23964 0.85072 0.78541 0.77969 0.77371 1.17599 1.20434 1.20426 1.21104 1.04810 1.00641 0.90502 1.21176 0.97892 0.94295 0.98104 1.20075 1.00668 0.95029 0.95289 1.20864 1.02355 1.00929 0.92580 0.90680 0.91327 0.95321 0.88295 0.92545 0.88564 0.74012 0.75732 0.99447 0.99460 0.92196 0.83288 0.82410 0.90035 0.90144 0.90967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.25 9.70 71.98 0.70 -2.55 16 2 C -0.08 -1.94 5.37 29.85 0.16 -1.78 16 3 C -0.08 -2.10 5.13 -19.88 -0.10 -2.20 16 4 C -0.15 -5.13 8.28 22.39 0.19 -4.95 16 5 C 0.15 4.61 6.28 38.15 0.24 4.85 16 6 N -0.67 -21.75 5.35 -317.18 -1.70 -23.45 16 7 C 0.69 30.09 8.30 179.05 1.49 31.57 16 8 O -0.63 -33.45 14.04 -3.98 -0.06 -33.50 16 9 N -0.72 -31.46 5.55 -482.30 -2.68 -34.14 16 10 C 0.28 15.98 5.43 85.63 0.46 16.44 16 11 C -0.55 -30.42 9.28 25.60 0.24 -30.18 16 12 H 0.09 4.19 7.60 -2.91 -0.02 4.17 16 13 C 0.00 0.20 5.46 84.65 0.46 0.66 16 14 N -0.93 -56.51 13.29 21.45 0.28 -56.23 16 15 Si 0.99 42.45 29.54 68.60 2.03 44.47 16 16 H -0.25 -9.99 7.11 99.48 0.71 -9.29 16 17 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 18 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 19 C -0.15 -3.52 9.96 22.39 0.22 -3.29 16 20 C -0.10 -1.92 9.69 22.25 0.22 -1.71 16 21 C -0.11 -2.38 5.88 -19.84 -0.12 -2.50 16 22 C -0.11 -1.54 9.21 71.24 0.66 -0.89 16 23 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 24 H 0.07 1.34 6.91 -2.39 -0.02 1.32 16 25 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.10 1.71 6.98 -2.38 -0.02 1.69 16 27 H 0.06 1.45 8.05 -2.39 -0.02 1.43 16 28 H 0.10 4.11 6.43 -2.91 -0.02 4.09 16 29 H 0.42 9.88 8.83 -92.71 -0.82 9.06 16 30 H 0.41 14.55 8.34 -92.71 -0.77 13.77 16 31 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 32 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 33 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 34 H 0.15 2.59 8.06 -2.91 -0.02 2.57 16 35 H 0.16 2.00 8.06 -2.91 -0.02 1.97 16 36 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.08 0.86 8.08 -2.39 -0.02 0.84 16 38 H 0.07 0.97 5.41 -2.39 -0.01 0.96 16 Total: -1.00 -75.20 318.82 2.18 -73.03 By element: Atomic # 1 Polarization: 26.85 SS G_CDS: -0.51 Total: 26.34 kcal Atomic # 6 Polarization: -1.32 SS G_CDS: 4.81 Total: 3.49 kcal Atomic # 7 Polarization: -109.73 SS G_CDS: -4.09 Total: -113.82 kcal Atomic # 8 Polarization: -33.45 SS G_CDS: -0.06 Total: -33.50 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.47 kcal Total: -75.20 2.18 -73.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488558120.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.515 kcal (2) G-P(sol) polarization free energy of solvation -75.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds