Wall clock time and date at job start Mon Mar 30 2020 06:18:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35896 * 117.00083 * 2 1 4 4 C 1.38757 * 120.05426 * 0.29963 * 3 2 1 5 5 C 1.38119 * 119.94413 * 180.21111 * 4 3 2 6 6 C 1.38288 * 120.05366 * 359.50981 * 5 4 3 7 7 C 1.38240 * 120.11591 * 0.24016 * 6 5 4 8 8 C 1.50696 * 119.97662 * 180.02562 * 7 6 5 9 9 C 1.52999 * 109.47433 * 119.99615 * 8 7 6 10 10 C 1.52998 * 109.47183 * 359.97438 * 8 7 6 11 11 C 1.50696 * 109.47183 * 180.02562 * 10 8 7 12 12 H 1.07997 * 120.00066 * 0.02562 * 11 10 8 13 13 C 1.37881 * 119.99886 * 179.97438 * 11 10 8 14 14 N 1.31509 * 120.00031 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99745 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.46998 * 90.00721 * 15 13 11 17 17 H 1.48505 * 109.46830 * 210.00182 * 15 13 11 18 18 H 1.48491 * 109.47513 * 330.00400 * 15 13 11 19 19 C 1.50700 * 109.46908 * 239.99673 * 8 7 6 20 20 C 1.50700 * 120.00159 * 59.99972 * 19 8 7 21 21 O 1.20765 * 119.99933 * 239.99349 * 19 8 7 22 22 C 1.38171 * 120.05202 * 359.97438 * 7 6 5 23 23 H 1.09000 * 109.47190 * 299.99904 * 1 2 3 24 24 H 1.09000 * 109.47473 * 60.00460 * 1 2 3 25 25 H 1.09007 * 109.46894 * 179.97438 * 1 2 3 26 26 H 1.07998 * 120.02597 * 359.97438 * 4 3 2 27 27 H 1.08002 * 119.97592 * 179.79533 * 5 4 3 28 28 H 1.08006 * 119.94478 * 180.25913 * 6 5 4 29 29 H 1.09010 * 109.46935 * 60.00237 * 9 8 7 30 30 H 1.08996 * 109.47295 * 179.97438 * 9 8 7 31 31 H 1.08998 * 109.47292 * 300.00353 * 9 8 7 32 32 H 1.09002 * 109.46878 * 300.00145 * 10 8 7 33 33 H 1.08998 * 109.46684 * 60.00173 * 10 8 7 34 34 H 0.96999 * 120.00134 * 179.97438 * 14 13 11 35 35 H 1.09005 * 109.46896 * 89.99876 * 20 19 8 36 36 H 1.08998 * 109.47220 * 209.99545 * 20 19 8 37 37 H 1.08997 * 109.46895 * 330.00042 * 20 19 8 38 38 H 1.07997 * 120.02798 * 180.02562 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3753 0.0063 5 6 1.9208 3.6047 0.0019 6 6 3.3018 3.6757 0.0014 7 6 4.0560 2.5171 0.0004 8 6 5.5607 2.5982 0.0005 9 6 6.1088 1.9044 1.2491 10 6 5.9924 4.0660 0.0012 11 6 7.4972 4.1471 0.0007 12 1 8.0867 3.2422 -0.0005 13 6 8.1214 5.3765 0.0006 14 7 7.4035 6.4784 0.0015 15 14 9.9867 5.4769 -0.0008 16 1 10.4799 5.5042 -1.4012 17 1 10.4162 6.7141 0.6994 18 1 10.5467 4.2926 0.6983 19 6 6.1005 1.9168 -1.2305 20 6 5.7093 2.4125 -2.5989 21 8 6.8467 0.9737 -1.1205 22 6 3.4311 1.2848 0.0003 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 0.2128 2.3203 0.0108 27 1 1.3339 4.5114 0.0034 28 1 3.7922 4.6381 0.0022 29 1 5.8013 0.8586 1.2482 30 1 7.1972 1.9626 1.2490 31 1 5.7184 2.3971 2.1395 32 1 5.6020 4.5599 -0.8886 33 1 5.6019 4.5591 0.8914 34 1 7.8426 7.3433 0.0019 35 1 6.4210 3.1696 -2.9282 36 1 5.7136 1.5796 -3.3020 37 1 4.7106 2.8469 -2.5561 38 1 4.0206 0.3799 0.0000 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000584594612.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:07 Heat of formation + Delta-G solvation = -62.635508 kcal Electronic energy + Delta-G solvation = -20037.209514 eV Core-core repulsion = 17037.838623 eV Total energy + Delta-G solvation = -2999.370891 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.136 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.26475 -39.08301 -37.27071 -34.62387 -32.42720 -30.58635 -29.43332 -29.09925 -27.51637 -26.70480 -24.23332 -22.55451 -21.81541 -20.95105 -18.53719 -17.07731 -16.49627 -16.07560 -15.69774 -15.48400 -15.01054 -14.60602 -14.42846 -14.07496 -13.64038 -13.43527 -13.07588 -12.54455 -12.24436 -12.18971 -11.95003 -11.59761 -11.52352 -11.34304 -11.17594 -11.09395 -10.95857 -10.83898 -10.69655 -10.37702 -10.29218 -9.47061 -9.23819 -8.86465 -8.48717 -8.30157 -7.93348 -6.09127 -4.11218 1.56704 1.73114 2.79826 3.29704 3.34127 3.36466 3.42022 4.02159 4.41321 4.87671 4.90886 5.03534 5.06738 5.15414 5.28354 5.35163 5.42444 5.67428 5.68566 5.73619 5.81583 5.93126 6.01194 6.12347 6.24976 6.33059 6.50083 6.52903 6.66814 6.72004 6.80123 6.98350 7.06660 7.11907 7.47560 7.54626 7.56185 7.88915 8.26823 8.29993 8.94163 9.54212 11.01655 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.030154 B = 0.005607 C = 0.005160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.341875 B = 4992.449370 C = 5425.091776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.321 6.321 3 C 0.119 3.881 4 C -0.218 4.218 5 C -0.083 4.083 6 C -0.142 4.142 7 C -0.017 4.017 8 C -0.071 4.071 9 C -0.116 4.116 10 C 0.040 3.960 11 C -0.525 4.525 12 H 0.060 0.940 13 C 0.064 3.936 14 N -0.892 5.892 15 Si 0.888 3.112 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.273 1.273 19 C 0.396 3.604 20 C -0.199 4.199 21 O -0.476 6.476 22 C -0.152 4.152 23 H 0.053 0.947 24 H 0.053 0.947 25 H 0.095 0.905 26 H 0.121 0.879 27 H 0.123 0.877 28 H 0.142 0.858 29 H 0.041 0.959 30 H 0.073 0.927 31 H 0.053 0.947 32 H 0.029 0.971 33 H 0.033 0.967 34 H 0.262 0.738 35 H 0.101 0.899 36 H 0.071 0.929 37 H 0.078 0.922 38 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.459 -6.998 -1.217 15.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.235 6.235 3 C 0.075 3.925 4 C -0.236 4.236 5 C -0.101 4.101 6 C -0.159 4.159 7 C -0.018 4.018 8 C -0.072 4.072 9 C -0.173 4.173 10 C 0.003 3.997 11 C -0.563 4.563 12 H 0.078 0.922 13 C -0.138 4.138 14 N -0.530 5.530 15 Si 0.716 3.284 16 H -0.206 1.206 17 H -0.212 1.212 18 H -0.197 1.197 19 C 0.273 3.727 20 C -0.256 4.256 21 O -0.351 6.351 22 C -0.170 4.170 23 H 0.071 0.929 24 H 0.071 0.929 25 H 0.113 0.887 26 H 0.139 0.861 27 H 0.141 0.859 28 H 0.160 0.840 29 H 0.060 0.940 30 H 0.092 0.908 31 H 0.072 0.928 32 H 0.047 0.953 33 H 0.051 0.949 34 H 0.071 0.929 35 H 0.120 0.880 36 H 0.090 0.910 37 H 0.097 0.903 38 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -12.970 -7.503 -1.154 15.028 hybrid contribution 0.644 0.485 0.004 0.806 sum -12.327 -7.018 -1.150 14.231 Atomic orbital electron populations 1.22982 0.78973 1.03442 1.01160 1.86057 1.20905 1.27366 1.89150 1.18916 0.92112 0.83885 0.97623 1.21128 0.99429 0.92557 1.10511 1.20945 0.94708 0.96661 0.97818 1.21400 0.93225 0.99583 1.01737 1.19650 0.94886 0.91923 0.95312 1.20400 0.89411 1.02205 0.95143 1.21599 1.02582 0.97746 0.95343 1.19224 0.96567 0.85442 0.98449 1.21241 0.91378 0.92475 1.51235 0.92210 1.24932 0.98151 0.95749 0.94971 1.69934 1.35288 0.97501 1.50322 0.86639 0.85909 0.77607 0.78247 1.20611 1.21179 1.19731 1.24215 0.76398 0.80159 0.91973 1.22214 1.03935 1.03199 0.96261 1.90295 1.29630 1.25589 1.89558 1.20325 0.91147 0.98481 1.07061 0.92872 0.92878 0.88652 0.86086 0.85948 0.83984 0.94041 0.90775 0.92760 0.95275 0.94915 0.92870 0.88045 0.90978 0.90326 0.85689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.81 101.05 0.99 1.26 16 2 O -0.32 -4.46 10.50 -19.41 -0.20 -4.66 16 3 C 0.12 1.81 6.69 -39.22 -0.26 1.55 16 4 C -0.22 -2.93 9.04 -39.43 -0.36 -3.28 16 5 C -0.08 -1.17 10.04 -39.61 -0.40 -1.57 16 6 C -0.14 -2.38 8.97 -39.56 -0.36 -2.73 16 7 C -0.02 -0.31 4.01 -104.65 -0.42 -0.73 16 8 C -0.07 -1.44 0.48 -156.82 -0.07 -1.51 16 9 C -0.12 -2.34 7.32 37.16 0.27 -2.07 16 10 C 0.04 0.94 2.55 -27.89 -0.07 0.87 16 11 C -0.53 -13.96 7.80 -34.44 -0.27 -14.23 16 12 H 0.06 1.63 6.39 -52.49 -0.34 1.30 16 13 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 14 N -0.89 -25.12 13.29 55.43 0.74 -24.39 16 15 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 16 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 17 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 18 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 19 C 0.40 8.16 4.76 -29.03 -0.14 8.02 16 20 C -0.20 -3.48 9.60 36.01 0.35 -3.13 16 21 O -0.48 -10.84 16.72 5.99 0.10 -10.74 16 22 C -0.15 -2.56 8.75 -39.43 -0.35 -2.91 16 23 H 0.05 0.43 7.65 -51.93 -0.40 0.03 16 24 H 0.05 0.42 7.68 -51.93 -0.40 0.03 16 25 H 0.10 0.65 8.14 -51.92 -0.42 0.22 16 26 H 0.12 1.28 6.30 -52.49 -0.33 0.95 16 27 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 28 H 0.14 2.54 5.89 -52.48 -0.31 2.23 16 29 H 0.04 0.77 7.34 -51.92 -0.38 0.39 16 30 H 0.07 1.63 6.58 -51.93 -0.34 1.29 16 31 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 32 H 0.03 0.70 7.13 -51.93 -0.37 0.33 16 33 H 0.03 0.82 7.51 -51.93 -0.39 0.43 16 34 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 35 H 0.10 1.82 8.14 -51.93 -0.42 1.40 16 36 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 37 H 0.08 1.26 7.45 -51.93 -0.39 0.88 16 38 H 0.13 2.16 7.57 -52.49 -0.40 1.76 16 LS Contribution 313.07 15.07 4.72 4.72 Total: -1.00 -30.03 313.07 -6.13 -36.17 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -5.29 Total: 1.48 kcal Atomic # 6 Polarization: -17.66 SS G_CDS: -1.18 Total: -18.84 kcal Atomic # 7 Polarization: -25.12 SS G_CDS: 0.74 Total: -24.39 kcal Atomic # 8 Polarization: -15.29 SS G_CDS: -0.10 Total: -15.40 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.03 -6.13 -36.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584594612.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.468 kcal (2) G-P(sol) polarization free energy of solvation -30.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds