Wall clock time and date at job start Mon Mar 30 2020 06:18:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35896 * 117.00083 * 2 1 4 4 C 1.38757 * 120.05426 * 0.29963 * 3 2 1 5 5 C 1.38119 * 119.94413 * 180.21111 * 4 3 2 6 6 C 1.38288 * 120.05366 * 359.50981 * 5 4 3 7 7 C 1.38240 * 120.11591 * 0.24016 * 6 5 4 8 8 C 1.50696 * 119.97662 * 180.02562 * 7 6 5 9 9 C 1.52999 * 109.47433 * 119.99615 * 8 7 6 10 10 C 1.52998 * 109.47183 * 359.97438 * 8 7 6 11 11 C 1.50696 * 109.47183 * 180.02562 * 10 8 7 12 12 H 1.07997 * 120.00066 * 0.02562 * 11 10 8 13 13 C 1.37881 * 119.99886 * 179.97438 * 11 10 8 14 14 N 1.31509 * 120.00031 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99745 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.46998 * 90.00721 * 15 13 11 17 17 H 1.48505 * 109.46830 * 210.00182 * 15 13 11 18 18 H 1.48491 * 109.47513 * 330.00400 * 15 13 11 19 19 C 1.50700 * 109.46908 * 239.99673 * 8 7 6 20 20 C 1.50700 * 120.00159 * 59.99972 * 19 8 7 21 21 O 1.20765 * 119.99933 * 239.99349 * 19 8 7 22 22 C 1.38171 * 120.05202 * 359.97438 * 7 6 5 23 23 H 1.09000 * 109.47190 * 299.99904 * 1 2 3 24 24 H 1.09000 * 109.47473 * 60.00460 * 1 2 3 25 25 H 1.09007 * 109.46894 * 179.97438 * 1 2 3 26 26 H 1.07998 * 120.02597 * 359.97438 * 4 3 2 27 27 H 1.08002 * 119.97592 * 179.79533 * 5 4 3 28 28 H 1.08006 * 119.94478 * 180.25913 * 6 5 4 29 29 H 1.09010 * 109.46935 * 60.00237 * 9 8 7 30 30 H 1.08996 * 109.47295 * 179.97438 * 9 8 7 31 31 H 1.08998 * 109.47292 * 300.00353 * 9 8 7 32 32 H 1.09002 * 109.46878 * 300.00145 * 10 8 7 33 33 H 1.08998 * 109.46684 * 60.00173 * 10 8 7 34 34 H 0.96999 * 120.00134 * 179.97438 * 14 13 11 35 35 H 1.09005 * 109.46896 * 89.99876 * 20 19 8 36 36 H 1.08998 * 109.47220 * 209.99545 * 20 19 8 37 37 H 1.08997 * 109.46895 * 330.00042 * 20 19 8 38 38 H 1.07997 * 120.02798 * 180.02562 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3753 0.0063 5 6 1.9208 3.6047 0.0019 6 6 3.3018 3.6757 0.0014 7 6 4.0560 2.5171 0.0004 8 6 5.5607 2.5982 0.0005 9 6 6.1088 1.9044 1.2491 10 6 5.9924 4.0660 0.0012 11 6 7.4972 4.1471 0.0007 12 1 8.0867 3.2422 -0.0005 13 6 8.1214 5.3765 0.0006 14 7 7.4035 6.4784 0.0015 15 14 9.9867 5.4769 -0.0008 16 1 10.4799 5.5042 -1.4012 17 1 10.4162 6.7141 0.6994 18 1 10.5467 4.2926 0.6983 19 6 6.1005 1.9168 -1.2305 20 6 5.7093 2.4125 -2.5989 21 8 6.8467 0.9737 -1.1205 22 6 3.4311 1.2848 0.0003 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 0.2128 2.3203 0.0108 27 1 1.3339 4.5114 0.0034 28 1 3.7922 4.6381 0.0022 29 1 5.8013 0.8586 1.2482 30 1 7.1972 1.9626 1.2490 31 1 5.7184 2.3971 2.1395 32 1 5.6020 4.5599 -0.8886 33 1 5.6019 4.5591 0.8914 34 1 7.8426 7.3433 0.0019 35 1 6.4210 3.1696 -2.9282 36 1 5.7136 1.5796 -3.3020 37 1 4.7106 2.8469 -2.5561 38 1 4.0206 0.3799 0.0000 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584594612.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:07 Heat of formation + Delta-G solvation = -79.275039 kcal Electronic energy + Delta-G solvation = -20037.931059 eV Core-core repulsion = 17037.838623 eV Total energy + Delta-G solvation = -3000.092435 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.136 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.60164 -40.45017 -38.56418 -36.25494 -34.35286 -31.82349 -30.94173 -30.42856 -28.99617 -27.90149 -25.96356 -24.07623 -23.20582 -22.32282 -19.91091 -18.58464 -18.28478 -17.25527 -16.81733 -16.71135 -16.55655 -16.25869 -16.04088 -15.78038 -14.91932 -14.68506 -14.42328 -14.12697 -13.67553 -13.50511 -13.32363 -13.29843 -12.93345 -12.86050 -12.79508 -12.70385 -12.59404 -12.31906 -12.21076 -11.92482 -11.69079 -11.25473 -11.14623 -10.59919 -10.41705 -9.68200 -9.10678 -8.19448 -6.26686 0.35708 0.52567 1.15645 1.38252 1.40155 1.50100 2.37670 2.42896 2.79645 3.15503 3.34576 3.78031 3.92364 4.13514 4.20324 4.27234 4.38058 4.44929 4.45616 4.49229 4.57809 4.64276 4.67451 4.76377 4.79884 4.92813 5.08174 5.12718 5.14348 5.29872 5.35461 5.46806 5.53839 5.60606 5.78105 5.81936 5.84609 6.23471 6.51148 6.65170 6.85371 7.41328 8.91253 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.030154 B = 0.005607 C = 0.005160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.341875 B = 4992.449370 C = 5425.091776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.339 6.339 3 C 0.122 3.878 4 C -0.205 4.205 5 C -0.073 4.073 6 C -0.158 4.158 7 C -0.030 4.030 8 C -0.069 4.069 9 C -0.111 4.111 10 C 0.056 3.944 11 C -0.536 4.536 12 H 0.046 0.954 13 C 0.019 3.981 14 N -0.918 5.918 15 Si 0.943 3.057 16 H -0.274 1.274 17 H -0.279 1.279 18 H -0.275 1.275 19 C 0.389 3.611 20 C -0.194 4.194 21 O -0.504 6.504 22 C -0.166 4.166 23 H 0.066 0.934 24 H 0.067 0.933 25 H 0.117 0.883 26 H 0.159 0.841 27 H 0.153 0.847 28 H 0.124 0.876 29 H 0.052 0.948 30 H 0.048 0.952 31 H 0.056 0.944 32 H 0.021 0.979 33 H 0.013 0.987 34 H 0.264 0.736 35 H 0.096 0.904 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.595 -7.310 -1.649 17.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.253 6.253 3 C 0.076 3.924 4 C -0.223 4.223 5 C -0.091 4.091 6 C -0.177 4.177 7 C -0.030 4.030 8 C -0.069 4.069 9 C -0.168 4.168 10 C 0.019 3.981 11 C -0.574 4.574 12 H 0.065 0.935 13 C -0.180 4.180 14 N -0.558 5.558 15 Si 0.769 3.231 16 H -0.199 1.199 17 H -0.204 1.204 18 H -0.200 1.200 19 C 0.268 3.732 20 C -0.251 4.251 21 O -0.381 6.381 22 C -0.185 4.185 23 H 0.085 0.915 24 H 0.086 0.914 25 H 0.135 0.865 26 H 0.176 0.824 27 H 0.171 0.829 28 H 0.142 0.858 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.076 0.924 32 H 0.039 0.961 33 H 0.031 0.969 34 H 0.073 0.927 35 H 0.115 0.885 36 H 0.112 0.888 37 H 0.111 0.889 38 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -15.121 -7.816 -1.590 17.096 hybrid contribution 1.173 0.519 0.161 1.293 sum -13.948 -7.297 -1.429 15.806 Atomic orbital electron populations 1.23364 0.76265 1.05527 1.02483 1.86046 1.23686 1.26767 1.88793 1.18965 0.91597 0.85141 0.96654 1.21490 1.01191 0.91333 1.08302 1.21244 0.93514 0.98366 0.95958 1.21313 0.94693 0.98254 1.03403 1.19342 0.93065 0.92983 0.97592 1.20241 0.91735 0.99806 0.95159 1.21525 1.00844 0.98614 0.95847 1.18955 0.94703 0.87471 0.96964 1.21479 0.93025 0.92005 1.50844 0.93541 1.25601 1.01987 0.95563 0.94839 1.70015 1.36753 0.97870 1.51145 0.85783 0.81380 0.77537 0.78443 1.19924 1.20399 1.19996 1.24673 0.75469 0.79603 0.93421 1.22199 1.04411 1.03807 0.94672 1.90274 1.30759 1.26929 1.90110 1.20208 0.92391 0.97433 1.08474 0.91515 0.91400 0.86473 0.82372 0.82888 0.85845 0.92923 0.93276 0.92444 0.96061 0.96860 0.92657 0.88545 0.88785 0.88911 0.86890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.81 113.37 1.11 1.36 16 2 O -0.34 -8.53 10.50 -92.38 -0.97 -9.50 16 3 C 0.12 3.41 6.69 22.51 0.15 3.56 16 4 C -0.20 -4.76 9.04 22.37 0.20 -4.56 16 5 C -0.07 -1.86 10.04 22.25 0.22 -1.63 16 6 C -0.16 -5.24 8.97 22.28 0.20 -5.04 16 7 C -0.03 -1.06 4.01 -19.88 -0.08 -1.14 16 8 C -0.07 -2.87 0.48 -53.68 -0.03 -2.89 16 9 C -0.11 -4.67 7.32 71.98 0.53 -4.14 16 10 C 0.06 2.72 2.55 29.85 0.08 2.80 16 11 C -0.54 -29.25 7.80 25.60 0.20 -29.05 16 12 H 0.05 2.62 6.39 -2.91 -0.02 2.61 16 13 C 0.02 1.08 5.46 84.66 0.46 1.54 16 14 N -0.92 -52.39 13.29 21.45 0.28 -52.11 16 15 Si 0.94 44.04 29.54 68.60 2.03 46.06 16 16 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 17 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 18 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 19 C 0.39 16.34 4.76 29.10 0.14 16.48 16 20 C -0.19 -6.72 9.60 71.24 0.68 -6.04 16 21 O -0.50 -23.47 16.72 -1.47 -0.02 -23.49 16 22 C -0.17 -5.54 8.75 22.37 0.20 -5.35 16 23 H 0.07 0.78 7.65 -2.39 -0.02 0.77 16 24 H 0.07 0.78 7.68 -2.39 -0.02 0.76 16 25 H 0.12 1.15 8.14 -2.38 -0.02 1.13 16 26 H 0.16 2.49 6.30 -2.91 -0.02 2.47 16 27 H 0.15 2.93 8.06 -2.91 -0.02 2.91 16 28 H 0.12 4.51 5.89 -2.91 -0.02 4.49 16 29 H 0.05 2.04 7.34 -2.38 -0.02 2.02 16 30 H 0.05 2.26 6.58 -2.39 -0.02 2.25 16 31 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 32 H 0.02 1.05 7.13 -2.39 -0.02 1.04 16 33 H 0.01 0.69 7.51 -2.39 -0.02 0.67 16 34 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 35 H 0.10 3.47 8.14 -2.38 -0.02 3.45 16 36 H 0.09 2.81 8.14 -2.39 -0.02 2.79 16 37 H 0.09 2.92 7.45 -2.39 -0.02 2.90 16 38 H 0.11 3.95 7.57 -2.91 -0.02 3.93 16 Total: -1.00 -65.36 313.07 6.43 -58.93 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: 1.05 Total: 14.20 kcal Atomic # 6 Polarization: -38.16 SS G_CDS: 4.07 Total: -34.10 kcal Atomic # 7 Polarization: -52.39 SS G_CDS: 0.28 Total: -52.11 kcal Atomic # 8 Polarization: -32.00 SS G_CDS: -0.99 Total: -32.99 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.06 kcal Total: -65.36 6.43 -58.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584594612.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.346 kcal (2) G-P(sol) polarization free energy of solvation -65.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds