Wall clock time and date at job start Mon Mar 30 2020 06:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35905 * 116.99886 * 2 1 4 4 C 1.38731 * 120.05440 * 180.02562 * 3 2 1 5 5 C 1.38149 * 119.94508 * 180.02562 * 4 3 2 6 6 C 1.38270 * 120.05113 * 0.02562 * 5 4 3 7 7 C 1.50701 * 119.94129 * 179.97438 * 6 5 4 8 8 C 1.52996 * 109.46980 * 300.00205 * 7 6 5 9 9 C 1.52998 * 109.47204 * 180.02562 * 7 6 5 10 10 C 1.50701 * 109.47204 * 179.97438 * 9 7 6 11 11 H 1.07994 * 119.99644 * 0.02562 * 10 9 7 12 12 C 1.37875 * 119.99823 * 179.97438 * 10 9 7 13 13 N 1.31511 * 119.99753 * 179.97438 * 12 10 9 14 14 Si 1.86798 * 120.00106 * 0.02562 * 12 10 9 15 15 H 1.48506 * 109.47213 * 89.99758 * 14 12 10 16 16 H 1.48498 * 109.47321 * 209.99426 * 14 12 10 17 17 H 1.48497 * 109.47198 * 329.99489 * 14 12 10 18 18 C 1.50701 * 109.46840 * 59.99762 * 7 6 5 19 19 C 1.50702 * 119.99878 * 60.27865 * 18 7 6 20 20 O 1.20763 * 119.99937 * 239.99500 * 18 7 6 21 21 C 1.38266 * 120.11350 * 0.25054 * 6 5 4 22 22 C 1.38148 * 120.05311 * 359.45046 * 21 6 5 23 23 H 1.09001 * 109.46986 * 299.99862 * 1 2 3 24 24 H 1.08997 * 109.47210 * 60.00062 * 1 2 3 25 25 H 1.08998 * 109.47232 * 180.02562 * 1 2 3 26 26 H 1.08002 * 120.03070 * 0.02562 * 4 3 2 27 27 H 1.08000 * 119.97207 * 179.97438 * 5 4 3 28 28 H 1.09006 * 109.46938 * 180.02562 * 8 7 6 29 29 H 1.09005 * 109.47129 * 299.99498 * 8 7 6 30 30 H 1.09000 * 109.47764 * 60.00063 * 8 7 6 31 31 H 1.09004 * 109.46783 * 300.00304 * 9 7 6 32 32 H 1.08996 * 109.47009 * 59.99719 * 9 7 6 33 33 H 0.97003 * 119.99760 * 180.02562 * 13 12 10 34 34 H 1.09000 * 109.46964 * 269.72135 * 19 18 7 35 35 H 1.09003 * 109.47060 * 29.71948 * 19 18 7 36 36 H 1.09001 * 109.46926 * 149.72247 * 19 18 7 37 37 H 1.07999 * 119.96813 * 179.70314 * 21 6 5 38 38 H 1.08000 * 120.02657 * 180.24804 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4313 1.2849 -0.0005 5 6 4.0561 2.5170 0.0000 6 6 3.3018 3.6759 0.0016 7 6 3.9860 5.0186 0.0028 8 6 4.8607 5.1442 1.2517 9 6 2.9323 6.1279 0.0051 10 6 3.6164 7.4707 0.0069 11 1 4.6949 7.5271 0.0060 12 6 2.8654 8.6270 0.0086 13 7 3.4625 9.7987 0.0107 14 14 1.0000 8.5292 0.0094 15 1 0.5064 8.5016 1.4098 16 1 0.4418 9.7149 -0.6888 17 1 0.5688 7.2933 -0.6919 18 6 4.8465 5.1450 -1.2279 19 6 4.2209 5.0620 -2.5965 20 8 6.0366 5.3178 -1.1174 21 6 1.9210 3.6048 0.0079 22 6 1.2915 2.3751 0.0012 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 4.0209 0.3800 -0.0014 27 1 5.1345 2.5751 0.0000 28 1 5.3552 6.1156 1.2528 29 1 4.2383 5.0528 2.1419 30 1 5.6115 4.3539 1.2506 31 1 2.3087 6.0385 -0.8845 32 1 2.3102 6.0363 0.8954 33 1 2.9341 10.6122 0.0123 34 1 4.2183 4.0251 -2.9325 35 1 3.1966 5.4318 -2.5507 36 1 4.7955 5.6692 -3.2960 37 1 1.3342 4.5114 0.0140 38 1 0.2129 2.3201 0.0020 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000584594663.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:11 Heat of formation + Delta-G solvation = -57.814816 kcal Electronic energy + Delta-G solvation = -20039.229216 eV Core-core repulsion = 17040.067366 eV Total energy + Delta-G solvation = -2999.161850 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.136 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.34852 -39.20229 -37.34940 -34.65391 -32.31962 -31.03156 -29.53054 -29.31574 -27.53848 -27.18593 -23.91547 -22.85543 -21.48867 -21.08875 -18.24287 -17.92916 -16.93121 -16.02497 -15.77840 -15.57471 -14.81581 -14.52627 -14.49486 -13.98724 -13.70644 -13.60295 -13.21178 -12.83032 -12.55074 -12.24027 -11.98738 -11.94775 -11.75533 -11.43752 -11.35217 -11.13225 -11.04481 -10.77807 -10.69884 -10.57170 -9.85540 -9.70909 -9.25761 -8.85989 -8.82747 -8.59728 -7.87380 -6.10606 -4.10382 1.48421 1.57286 2.75454 3.23363 3.25545 3.30084 3.31873 3.89660 4.36211 4.78847 4.87277 4.98690 5.02226 5.08534 5.16354 5.22150 5.31692 5.52457 5.58246 5.65157 5.73684 5.83642 5.91091 5.98659 6.19126 6.25189 6.35457 6.45665 6.53694 6.55814 6.66283 6.87678 6.90978 7.02185 7.08928 7.12147 7.43410 7.65832 8.26404 8.44167 8.95899 9.49486 11.02257 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.020499 B = 0.006672 C = 0.005528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.614008 B = 4195.795384 C = 5063.636130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.322 6.322 3 C 0.113 3.887 4 C -0.150 4.150 5 C -0.081 4.081 6 C -0.091 4.091 7 C -0.056 4.056 8 C -0.117 4.117 9 C 0.001 3.999 10 C -0.525 4.525 11 H 0.079 0.921 12 C 0.073 3.927 13 N -0.896 5.896 14 Si 0.872 3.128 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.265 1.265 18 C 0.394 3.606 19 C -0.200 4.200 20 O -0.470 6.470 21 C -0.072 4.072 22 C -0.206 4.206 23 H 0.054 0.946 24 H 0.054 0.946 25 H 0.096 0.904 26 H 0.126 0.874 27 H 0.127 0.873 28 H 0.077 0.923 29 H 0.052 0.948 30 H 0.042 0.958 31 H 0.026 0.974 32 H 0.026 0.974 33 H 0.264 0.736 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.135 0.865 38 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.309 -16.988 -1.239 18.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.236 6.236 3 C 0.069 3.931 4 C -0.169 4.169 5 C -0.099 4.099 6 C -0.091 4.091 7 C -0.057 4.057 8 C -0.174 4.174 9 C -0.036 4.036 10 C -0.563 4.563 11 H 0.097 0.903 12 C -0.130 4.130 13 N -0.534 5.534 14 Si 0.700 3.300 15 H -0.202 1.202 16 H -0.213 1.213 17 H -0.189 1.189 18 C 0.271 3.729 19 C -0.257 4.257 20 O -0.344 6.344 21 C -0.090 4.090 22 C -0.225 4.225 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.114 0.886 26 H 0.144 0.856 27 H 0.145 0.855 28 H 0.096 0.904 29 H 0.071 0.929 30 H 0.061 0.939 31 H 0.044 0.956 32 H 0.044 0.956 33 H 0.074 0.926 34 H 0.101 0.899 35 H 0.106 0.894 36 H 0.098 0.902 37 H 0.153 0.847 38 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -5.627 -16.886 -1.183 17.838 hybrid contribution -1.487 0.329 0.028 1.524 sum -7.114 -16.557 -1.154 18.057 Atomic orbital electron populations 1.23003 0.78770 1.03505 1.01399 1.86031 1.21095 1.27310 1.89162 1.18996 0.92330 0.83918 0.97895 1.20314 0.91226 0.98303 1.07042 1.20900 0.99939 0.91064 0.97982 1.19771 0.93489 0.94272 1.01580 1.20076 0.97475 0.92657 0.95475 1.21621 0.97987 1.02766 0.95048 1.19727 0.93457 0.93248 0.97167 1.21119 0.95442 0.88260 1.51468 0.90322 1.24978 0.98206 0.95340 0.94429 1.69909 1.35713 0.97487 1.50262 0.86898 0.86568 0.77941 0.78633 1.20170 1.21275 1.18931 1.24155 0.88360 0.68611 0.91816 1.22216 1.03958 1.02891 0.96608 1.90312 1.18169 1.36434 1.89470 1.21142 0.94330 0.97360 0.96176 1.21220 0.99760 0.92305 1.09194 0.92743 0.92727 0.88594 0.85558 0.85550 0.90382 0.92877 0.93934 0.95624 0.95621 0.92617 0.89949 0.89371 0.90196 0.84682 0.85732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.23 16 2 O -0.32 -3.98 10.50 -19.44 -0.20 -4.19 16 3 C 0.11 1.55 6.69 -39.22 -0.26 1.28 16 4 C -0.15 -2.06 9.99 -39.43 -0.39 -2.45 16 5 C -0.08 -1.21 8.81 -39.60 -0.35 -1.55 16 6 C -0.09 -1.50 4.47 -104.60 -0.47 -1.97 16 7 C -0.06 -1.09 0.47 -156.81 -0.07 -1.16 16 8 C -0.12 -2.30 7.32 37.16 0.27 -2.02 16 9 C 0.00 0.02 1.60 -27.88 -0.04 -0.02 16 10 C -0.53 -14.12 8.35 -34.44 -0.29 -14.41 16 11 H 0.08 2.37 6.64 -52.49 -0.35 2.02 16 12 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 13 N -0.90 -26.86 13.96 55.43 0.77 -26.08 16 14 Si 0.87 20.45 27.47 -169.99 -4.67 15.79 16 15 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 16 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 17 H -0.26 -5.75 6.54 56.52 0.37 -5.38 16 18 C 0.39 7.91 4.76 -29.03 -0.14 7.77 16 19 C -0.20 -3.36 9.87 36.01 0.36 -3.00 16 20 O -0.47 -10.62 16.72 6.00 0.10 -10.52 16 21 C -0.07 -1.12 8.97 -39.60 -0.36 -1.48 16 22 C -0.21 -2.79 9.04 -39.43 -0.36 -3.15 16 23 H 0.05 0.42 7.66 -51.93 -0.40 0.02 16 24 H 0.05 0.42 7.66 -51.93 -0.40 0.02 16 25 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.13 1.50 8.06 -52.49 -0.42 1.07 16 27 H 0.13 1.81 7.57 -52.49 -0.40 1.42 16 28 H 0.08 1.75 6.57 -51.93 -0.34 1.41 16 29 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 30 H 0.04 0.75 7.34 -51.93 -0.38 0.37 16 31 H 0.03 0.55 5.23 -51.93 -0.27 0.27 16 32 H 0.03 0.56 6.93 -51.93 -0.36 0.20 16 33 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 34 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.09 1.47 6.62 -51.93 -0.34 1.13 16 36 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 37 H 0.14 2.15 5.88 -52.49 -0.31 1.84 16 38 H 0.12 1.38 6.30 -52.49 -0.33 1.05 16 LS Contribution 308.36 15.07 4.65 4.65 Total: -1.00 -31.15 308.36 -5.72 -36.87 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -5.16 Total: 2.50 kcal Atomic # 6 Polarization: -17.80 SS G_CDS: -1.21 Total: -19.01 kcal Atomic # 7 Polarization: -26.86 SS G_CDS: 0.77 Total: -26.08 kcal Atomic # 8 Polarization: -14.60 SS G_CDS: -0.10 Total: -14.71 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -4.67 Total: 15.79 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -31.15 -5.72 -36.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584594663.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.945 kcal (2) G-P(sol) polarization free energy of solvation -31.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds