Wall clock time and date at job start Mon Mar 30 2020 06:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35905 * 116.99886 * 2 1 4 4 C 1.38731 * 120.05440 * 180.02562 * 3 2 1 5 5 C 1.38149 * 119.94508 * 180.02562 * 4 3 2 6 6 C 1.38270 * 120.05113 * 0.02562 * 5 4 3 7 7 C 1.50701 * 119.94129 * 179.97438 * 6 5 4 8 8 C 1.52996 * 109.46980 * 300.00205 * 7 6 5 9 9 C 1.52998 * 109.47204 * 180.02562 * 7 6 5 10 10 C 1.50701 * 109.47204 * 179.97438 * 9 7 6 11 11 H 1.07994 * 119.99644 * 0.02562 * 10 9 7 12 12 C 1.37875 * 119.99823 * 179.97438 * 10 9 7 13 13 N 1.31511 * 119.99753 * 179.97438 * 12 10 9 14 14 Si 1.86798 * 120.00106 * 0.02562 * 12 10 9 15 15 H 1.48506 * 109.47213 * 89.99758 * 14 12 10 16 16 H 1.48498 * 109.47321 * 209.99426 * 14 12 10 17 17 H 1.48497 * 109.47198 * 329.99489 * 14 12 10 18 18 C 1.50701 * 109.46840 * 59.99762 * 7 6 5 19 19 C 1.50702 * 119.99878 * 60.27865 * 18 7 6 20 20 O 1.20763 * 119.99937 * 239.99500 * 18 7 6 21 21 C 1.38266 * 120.11350 * 0.25054 * 6 5 4 22 22 C 1.38148 * 120.05311 * 359.45046 * 21 6 5 23 23 H 1.09001 * 109.46986 * 299.99862 * 1 2 3 24 24 H 1.08997 * 109.47210 * 60.00062 * 1 2 3 25 25 H 1.08998 * 109.47232 * 180.02562 * 1 2 3 26 26 H 1.08002 * 120.03070 * 0.02562 * 4 3 2 27 27 H 1.08000 * 119.97207 * 179.97438 * 5 4 3 28 28 H 1.09006 * 109.46938 * 180.02562 * 8 7 6 29 29 H 1.09005 * 109.47129 * 299.99498 * 8 7 6 30 30 H 1.09000 * 109.47764 * 60.00063 * 8 7 6 31 31 H 1.09004 * 109.46783 * 300.00304 * 9 7 6 32 32 H 1.08996 * 109.47009 * 59.99719 * 9 7 6 33 33 H 0.97003 * 119.99760 * 180.02562 * 13 12 10 34 34 H 1.09000 * 109.46964 * 269.72135 * 19 18 7 35 35 H 1.09003 * 109.47060 * 29.71948 * 19 18 7 36 36 H 1.09001 * 109.46926 * 149.72247 * 19 18 7 37 37 H 1.07999 * 119.96813 * 179.70314 * 21 6 5 38 38 H 1.08000 * 120.02657 * 180.24804 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4313 1.2849 -0.0005 5 6 4.0561 2.5170 0.0000 6 6 3.3018 3.6759 0.0016 7 6 3.9860 5.0186 0.0028 8 6 4.8607 5.1442 1.2517 9 6 2.9323 6.1279 0.0051 10 6 3.6164 7.4707 0.0069 11 1 4.6949 7.5271 0.0060 12 6 2.8654 8.6270 0.0086 13 7 3.4625 9.7987 0.0107 14 14 1.0000 8.5292 0.0094 15 1 0.5064 8.5016 1.4098 16 1 0.4418 9.7149 -0.6888 17 1 0.5688 7.2933 -0.6919 18 6 4.8465 5.1450 -1.2279 19 6 4.2209 5.0620 -2.5965 20 8 6.0366 5.3178 -1.1174 21 6 1.9210 3.6048 0.0079 22 6 1.2915 2.3751 0.0012 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 4.0209 0.3800 -0.0014 27 1 5.1345 2.5751 0.0000 28 1 5.3552 6.1156 1.2528 29 1 4.2383 5.0528 2.1419 30 1 5.6115 4.3539 1.2506 31 1 2.3087 6.0385 -0.8845 32 1 2.3102 6.0363 0.8954 33 1 2.9341 10.6122 0.0123 34 1 4.2183 4.0251 -2.9325 35 1 3.1966 5.4318 -2.5507 36 1 4.7955 5.6692 -3.2960 37 1 1.3342 4.5114 0.0140 38 1 0.2129 2.3201 0.0020 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584594663.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:10 Heat of formation + Delta-G solvation = -76.631608 kcal Electronic energy + Delta-G solvation = -20040.045173 eV Core-core repulsion = 17040.067366 eV Total energy + Delta-G solvation = -2999.977808 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.136 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.59089 -40.47763 -38.57181 -36.21945 -34.29365 -32.12655 -30.94875 -30.67355 -29.15059 -28.05689 -25.53068 -24.21826 -22.71556 -22.54973 -19.64795 -19.15068 -18.73982 -17.25698 -16.92459 -16.57700 -16.37329 -16.13129 -15.99126 -15.45308 -15.11060 -14.68276 -14.59324 -14.28992 -13.81955 -13.60540 -13.42062 -13.40539 -12.92154 -12.89523 -12.80473 -12.71436 -12.53532 -12.25036 -11.90017 -11.87874 -11.70355 -11.33184 -11.14948 -10.75735 -10.37826 -9.92232 -8.99381 -8.24133 -6.29421 0.40567 0.45293 1.18243 1.39446 1.41646 1.51609 2.38910 2.42537 2.77545 3.11396 3.34516 3.79140 3.90702 4.00731 4.14029 4.21833 4.38100 4.42230 4.46244 4.47593 4.60934 4.65700 4.68631 4.78943 4.81436 4.93223 4.98326 5.06983 5.13389 5.25406 5.31158 5.36814 5.40558 5.41964 5.68583 5.75493 5.80557 6.30273 6.49631 6.69144 6.79923 7.34234 8.92738 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.020499 B = 0.006672 C = 0.005528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.614008 B = 4195.795384 C = 5063.636130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.333 6.333 3 C 0.117 3.883 4 C -0.151 4.151 5 C -0.082 4.082 6 C -0.105 4.105 7 C -0.053 4.053 8 C -0.113 4.113 9 C 0.008 3.992 10 C -0.524 4.524 11 H 0.027 0.973 12 C 0.007 3.993 13 N -0.952 5.952 14 Si 0.942 3.058 15 H -0.269 1.269 16 H -0.290 1.290 17 H -0.228 1.228 18 C 0.385 3.615 19 C -0.196 4.196 20 O -0.508 6.508 21 C -0.079 4.079 22 C -0.200 4.200 23 H 0.062 0.938 24 H 0.064 0.936 25 H 0.119 0.881 26 H 0.143 0.857 27 H 0.125 0.875 28 H 0.036 0.964 29 H 0.062 0.938 30 H 0.055 0.945 31 H 0.043 0.957 32 H 0.036 0.964 33 H 0.264 0.736 34 H 0.115 0.885 35 H 0.093 0.907 36 H 0.078 0.922 37 H 0.133 0.867 38 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.466 -19.934 -1.679 22.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.247 6.247 3 C 0.072 3.928 4 C -0.170 4.170 5 C -0.100 4.100 6 C -0.106 4.106 7 C -0.054 4.054 8 C -0.171 4.171 9 C -0.029 4.029 10 C -0.562 4.562 11 H 0.046 0.954 12 C -0.190 4.190 13 N -0.593 5.593 14 Si 0.765 3.235 15 H -0.194 1.194 16 H -0.216 1.216 17 H -0.151 1.151 18 C 0.264 3.736 19 C -0.253 4.253 20 O -0.385 6.385 21 C -0.097 4.097 22 C -0.218 4.218 23 H 0.081 0.919 24 H 0.083 0.917 25 H 0.137 0.863 26 H 0.161 0.839 27 H 0.143 0.857 28 H 0.055 0.945 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.061 0.939 32 H 0.054 0.946 33 H 0.073 0.927 34 H 0.133 0.867 35 H 0.111 0.889 36 H 0.097 0.903 37 H 0.151 0.849 38 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -8.799 -19.872 -1.627 21.794 hybrid contribution -0.449 1.147 0.191 1.247 sum -9.248 -18.725 -1.436 20.934 Atomic orbital electron populations 1.23342 0.76567 1.05520 1.02281 1.86036 1.23364 1.26530 1.88727 1.19120 0.92429 0.84598 0.96651 1.20491 0.91839 0.98309 1.06341 1.20863 0.99872 0.91159 0.98152 1.19452 0.94066 0.92689 1.04377 1.19937 0.96744 0.93940 0.94813 1.21546 0.98494 1.00835 0.96176 1.19640 0.93980 0.91142 0.98129 1.21335 0.93418 0.91048 1.50364 0.95447 1.25984 1.04262 0.94629 0.94081 1.70096 1.38094 0.98557 1.52539 0.85782 0.79189 0.79249 0.79286 1.19399 1.21597 1.15105 1.24785 0.88048 0.67129 0.93663 1.22231 1.03597 1.05030 0.94423 1.90295 1.19780 1.38255 1.90154 1.21139 0.93649 0.98219 0.96698 1.21422 1.01146 0.91298 1.07949 0.91889 0.91701 0.86252 0.83875 0.85741 0.94509 0.91936 0.92586 0.93915 0.94612 0.92670 0.86652 0.88868 0.90344 0.84895 0.83037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 113.37 1.11 1.32 16 2 O -0.33 -6.91 10.50 -92.48 -0.97 -7.88 16 3 C 0.12 2.76 6.69 22.50 0.15 2.91 16 4 C -0.15 -3.70 9.99 22.37 0.22 -3.48 16 5 C -0.08 -2.30 8.81 22.26 0.20 -2.10 16 6 C -0.11 -3.29 4.47 -19.85 -0.09 -3.37 16 7 C -0.05 -2.06 0.47 -53.68 -0.03 -2.09 16 8 C -0.11 -4.58 7.32 71.98 0.53 -4.06 16 9 C 0.01 0.35 1.60 29.85 0.05 0.40 16 10 C -0.52 -29.01 8.35 25.60 0.21 -28.80 16 11 H 0.03 1.76 6.64 -2.91 -0.02 1.74 16 12 C 0.01 0.41 5.47 84.65 0.46 0.87 16 13 N -0.95 -59.37 13.96 21.45 0.30 -59.07 16 14 Si 0.94 41.45 27.47 68.60 1.88 43.33 16 15 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 16 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 17 H -0.23 -8.65 6.54 99.48 0.65 -8.00 16 18 C 0.38 15.59 4.76 29.10 0.14 15.72 16 19 C -0.20 -6.35 9.87 71.24 0.70 -5.65 16 20 O -0.51 -23.91 16.72 -1.46 -0.02 -23.93 16 21 C -0.08 -2.20 8.97 22.25 0.20 -2.00 16 22 C -0.20 -4.58 9.04 22.37 0.20 -4.38 16 23 H 0.06 0.69 7.66 -2.39 -0.02 0.67 16 24 H 0.06 0.69 7.66 -2.39 -0.02 0.67 16 25 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.14 2.96 8.06 -2.91 -0.02 2.93 16 27 H 0.12 3.45 7.57 -2.91 -0.02 3.43 16 28 H 0.04 1.75 6.57 -2.38 -0.02 1.74 16 29 H 0.06 2.33 8.14 -2.38 -0.02 2.31 16 30 H 0.06 2.05 7.34 -2.39 -0.02 2.03 16 31 H 0.04 1.71 5.23 -2.38 -0.01 1.70 16 32 H 0.04 1.48 6.93 -2.39 -0.02 1.47 16 33 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 34 H 0.12 2.96 8.14 -2.39 -0.02 2.94 16 35 H 0.09 2.92 6.62 -2.39 -0.02 2.90 16 36 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 37 H 0.13 3.73 5.88 -2.91 -0.02 3.71 16 38 H 0.15 2.60 6.30 -2.91 -0.02 2.58 16 Total: -1.00 -70.51 308.36 6.25 -64.26 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: 1.00 Total: 17.98 kcal Atomic # 6 Polarization: -38.76 SS G_CDS: 4.06 Total: -34.70 kcal Atomic # 7 Polarization: -59.37 SS G_CDS: 0.30 Total: -59.07 kcal Atomic # 8 Polarization: -30.82 SS G_CDS: -1.00 Total: -31.81 kcal Atomic # 14 Polarization: 41.45 SS G_CDS: 1.88 Total: 43.33 kcal Total: -70.51 6.25 -64.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584594663.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.370 kcal (2) G-P(sol) polarization free energy of solvation -70.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds