Wall clock time and date at job start Mon Mar 30 2020 06:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46493 * 109.47451 * 2 1 4 4 C 1.34773 * 120.00126 * 269.99871 * 3 2 1 5 5 O 1.21295 * 119.99975 * 184.81102 * 4 3 2 6 6 C 1.50696 * 119.99866 * 4.81178 * 4 3 2 7 7 C 1.53005 * 109.46838 * 179.97438 * 6 4 3 8 8 C 1.53003 * 109.46910 * 179.97438 * 7 6 4 9 9 C 1.50697 * 109.47305 * 180.02562 * 8 7 6 10 10 H 1.08001 * 119.99937 * 0.02562 * 9 8 7 11 11 C 1.37875 * 120.00293 * 179.97438 * 9 8 7 12 12 N 1.31515 * 119.99907 * 180.02562 * 11 9 8 13 13 Si 1.86798 * 120.00047 * 0.02562 * 11 9 8 14 14 H 1.48504 * 109.47327 * 89.99359 * 13 11 9 15 15 H 1.48501 * 109.47265 * 209.99565 * 13 11 9 16 16 H 1.48502 * 109.47184 * 329.99758 * 13 11 9 17 17 C 1.39952 * 119.99948 * 90.00028 * 3 2 1 18 18 C 1.39288 * 120.48580 * 247.61954 * 17 3 2 19 19 C 1.38507 * 118.35710 * 179.97438 * 18 17 3 20 20 C 1.38271 * 119.23884 * 0.25601 * 19 18 17 21 21 N 1.31849 * 120.91709 * 359.47052 * 20 19 18 22 22 C 1.31826 * 121.79752 * 0.54198 * 21 20 19 23 23 H 1.09000 * 109.47203 * 300.00388 * 1 2 3 24 24 H 1.09006 * 109.46999 * 60.00052 * 1 2 3 25 25 H 1.08999 * 109.47667 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47203 * 239.99612 * 2 1 3 27 27 H 1.09006 * 109.46999 * 119.99948 * 2 1 3 28 28 H 1.09001 * 109.47161 * 299.99784 * 6 4 3 29 29 H 1.09002 * 109.47272 * 60.00182 * 6 4 3 30 30 H 1.09000 * 109.47785 * 299.99730 * 7 6 4 31 31 H 1.09003 * 109.47217 * 60.00510 * 7 6 4 32 32 H 1.09001 * 109.47228 * 300.00184 * 8 7 6 33 33 H 1.09002 * 109.47133 * 60.00539 * 8 7 6 34 34 H 0.97004 * 119.99926 * 180.02562 * 12 11 9 35 35 H 1.07999 * 120.81889 * 359.95497 * 18 17 3 36 36 H 1.08001 * 120.37667 * 179.97438 * 19 18 17 37 37 H 1.07997 * 119.54024 * 179.72692 * 20 19 18 38 38 H 1.08002 * 119.66586 * 179.70539 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2431 2.0165 -1.1672 5 8 2.7294 3.1276 -1.1690 6 6 1.8900 1.3463 -2.4699 7 6 2.2428 2.2754 -3.6333 8 6 1.8849 1.5948 -4.9560 9 6 2.2329 2.5095 -6.1020 10 1 2.6664 3.4792 -5.9064 11 6 1.9989 2.1081 -7.4001 12 7 2.3031 2.9063 -8.4001 13 14 1.2498 0.4307 -7.7384 14 1 -0.2304 0.5468 -7.7703 15 1 1.7351 -0.0731 -9.0484 16 1 1.6490 -0.5153 -6.6655 17 6 2.2517 2.0408 1.2120 18 6 1.4550 3.1171 1.5955 19 6 1.7246 3.7374 2.8042 20 6 2.7703 3.2754 3.5820 21 7 3.5027 2.2505 3.1928 22 6 3.2802 1.6318 2.0501 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 2.4510 0.4165 -2.5640 29 1 0.8219 1.1298 -2.4894 30 1 1.6814 3.2050 -3.5391 31 1 3.3108 2.4923 -3.6141 32 1 2.4466 0.6653 -5.0501 33 1 0.8169 1.3775 -4.9756 34 1 2.1381 2.6240 -9.3134 35 1 0.6473 3.4597 0.9657 36 1 1.1277 4.5752 3.1333 37 1 2.9876 3.7583 4.5232 38 1 3.9046 0.7987 1.7629 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593970370.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:11 Heat of formation + Delta-G solvation = -8.483024 kcal Electronic energy + Delta-G solvation = -19160.276336 eV Core-core repulsion = 16195.546424 eV Total energy + Delta-G solvation = -2964.729912 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.97843 -39.32779 -36.27433 -34.45152 -32.69346 -32.13995 -31.54402 -29.76007 -28.29242 -24.60822 -24.19493 -23.34812 -22.61099 -20.29491 -19.33656 -17.60682 -16.98580 -16.88777 -16.71679 -16.48556 -15.31730 -14.63768 -14.27218 -14.05354 -13.94410 -13.81356 -13.67761 -13.30394 -12.86704 -12.69757 -12.51195 -12.14705 -11.98334 -11.74743 -11.36404 -10.99040 -10.79466 -10.25762 -10.07576 -9.99731 -9.87123 -9.73491 -9.66196 -9.33918 -9.15270 -8.67480 -8.52805 -6.02261 -4.00341 0.80616 1.04640 2.64612 2.71977 3.29826 3.37152 3.39533 3.54379 4.24862 4.45302 4.58381 4.63810 4.67621 4.73974 4.81279 4.96646 5.04896 5.12868 5.30819 5.37231 5.43273 5.47377 5.49460 5.59441 5.82516 5.85379 5.91308 6.06629 6.17611 6.50741 6.60934 6.69168 6.87970 7.13978 7.34188 7.41924 7.70589 7.80404 8.18556 8.57285 9.04355 9.59496 11.11445 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.035099 B = 0.003898 C = 0.003672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.562579 B = 7180.609076 C = 7622.525923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.106 3.894 3 N -0.580 5.580 4 C 0.517 3.483 5 O -0.518 6.518 6 C -0.138 4.138 7 C -0.089 4.089 8 C -0.013 4.013 9 C -0.520 4.520 10 H 0.072 0.928 11 C 0.064 3.936 12 N -0.904 5.904 13 Si 0.881 3.119 14 H -0.278 1.278 15 H -0.288 1.288 16 H -0.266 1.266 17 C 0.103 3.897 18 C -0.067 4.067 19 C -0.160 4.160 20 C 0.090 3.910 21 N -0.476 5.476 22 C 0.097 3.903 23 H 0.056 0.944 24 H 0.064 0.936 25 H 0.071 0.929 26 H 0.091 0.909 27 H 0.080 0.920 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.016 0.984 33 H 0.011 0.989 34 H 0.263 0.737 35 H 0.134 0.866 36 H 0.138 0.862 37 H 0.157 0.843 38 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.297 -6.652 23.523 24.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.016 4.016 3 N -0.313 5.313 4 C 0.307 3.693 5 O -0.391 6.391 6 C -0.178 4.178 7 C -0.127 4.127 8 C -0.051 4.051 9 C -0.558 4.558 10 H 0.090 0.910 11 C -0.136 4.136 12 N -0.543 5.543 13 Si 0.709 3.291 14 H -0.203 1.203 15 H -0.214 1.214 16 H -0.190 1.190 17 C 0.010 3.990 18 C -0.095 4.095 19 C -0.181 4.181 20 C -0.067 4.067 21 N -0.184 5.184 22 C -0.062 4.062 23 H 0.075 0.925 24 H 0.083 0.917 25 H 0.090 0.910 26 H 0.109 0.891 27 H 0.098 0.902 28 H 0.109 0.891 29 H 0.110 0.890 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.034 0.966 33 H 0.029 0.971 34 H 0.072 0.928 35 H 0.152 0.848 36 H 0.156 0.844 37 H 0.175 0.825 38 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -3.344 -6.329 23.805 24.858 hybrid contribution -1.199 -0.559 -0.878 1.588 sum -4.543 -6.887 22.927 24.366 Atomic orbital electron populations 1.22235 0.95420 1.02718 1.02846 1.21712 0.94921 0.81072 1.03891 1.45782 1.67234 1.14758 1.03499 1.21422 0.76750 0.86081 0.85026 1.90730 1.41577 1.19802 1.86981 1.21956 1.03121 1.01105 0.91568 1.21307 1.01833 0.97380 0.92170 1.19595 0.95899 0.96536 0.93027 1.21153 1.41573 1.03514 0.89523 0.90950 1.25054 0.95245 0.97104 0.96233 1.69925 1.48658 1.36681 0.99046 0.86760 0.79650 0.85083 0.77639 1.20345 1.21426 1.19029 1.18650 0.96107 0.95840 0.88424 1.21778 0.97800 0.94416 0.95497 1.22095 0.99641 1.01262 0.95086 1.22772 0.91638 0.92688 0.99588 1.67688 1.27261 1.08119 1.15345 1.22913 0.93816 0.99285 0.90178 0.92470 0.91668 0.91037 0.89079 0.90199 0.89058 0.89009 0.92079 0.91997 0.96617 0.97083 0.92767 0.84805 0.84432 0.82535 0.82731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.32 10.23 37.16 0.38 -0.94 16 2 C 0.11 0.88 5.85 -4.05 -0.02 0.85 16 3 N -0.58 -6.93 2.54 -113.34 -0.29 -7.22 16 4 C 0.52 8.01 7.53 -10.99 -0.08 7.92 16 5 O -0.52 -10.23 15.75 5.54 0.09 -10.14 16 6 C -0.14 -2.07 4.37 -27.88 -0.12 -2.19 16 7 C -0.09 -1.81 4.44 -26.73 -0.12 -1.93 16 8 C -0.01 -0.31 4.04 -27.88 -0.11 -0.42 16 9 C -0.52 -15.07 9.66 -34.44 -0.33 -15.40 16 10 H 0.07 2.29 7.99 -52.49 -0.42 1.87 16 11 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 12 N -0.90 -28.25 13.96 55.43 0.77 -27.47 16 13 Si 0.88 21.52 27.47 -169.99 -4.67 16.85 16 14 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 15 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 16 H -0.27 -6.11 6.54 56.52 0.37 -5.74 16 17 C 0.10 1.25 4.77 -83.54 -0.40 0.85 16 18 C -0.07 -0.77 9.71 -39.09 -0.38 -1.15 16 19 C -0.16 -1.51 10.10 -39.47 -0.40 -1.91 16 20 C 0.09 0.88 11.18 -17.53 -0.20 0.68 16 21 N -0.48 -5.65 10.35 -13.09 -0.14 -5.79 16 22 C 0.10 1.13 10.86 -17.33 -0.19 0.94 16 23 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 24 H 0.06 0.56 6.95 -51.93 -0.36 0.20 16 25 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.09 0.68 6.47 -51.93 -0.34 0.34 16 27 H 0.08 0.53 7.87 -51.93 -0.41 0.12 16 28 H 0.09 1.19 7.26 -51.93 -0.38 0.81 16 29 H 0.09 1.20 6.95 -51.93 -0.36 0.84 16 30 H 0.06 1.32 8.10 -51.93 -0.42 0.90 16 31 H 0.06 1.34 8.10 -51.93 -0.42 0.92 16 32 H 0.02 0.36 7.20 -51.93 -0.37 -0.01 16 33 H 0.01 0.25 7.57 -51.93 -0.39 -0.15 16 34 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 35 H 0.13 1.50 8.06 -52.49 -0.42 1.07 16 36 H 0.14 0.91 8.06 -52.49 -0.42 0.48 16 37 H 0.16 1.04 8.06 -52.49 -0.42 0.62 16 38 H 0.16 1.54 8.06 -52.49 -0.42 1.11 16 LS Contribution 320.32 15.07 4.83 4.83 Total: -1.00 -34.87 320.32 -7.05 -41.92 By element: Atomic # 1 Polarization: 3.48 SS G_CDS: -5.57 Total: -2.09 kcal Atomic # 6 Polarization: -8.82 SS G_CDS: -2.07 Total: -10.89 kcal Atomic # 7 Polarization: -40.82 SS G_CDS: 0.35 Total: -40.47 kcal Atomic # 8 Polarization: -10.23 SS G_CDS: 0.09 Total: -10.14 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.67 Total: 16.85 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -34.87 -7.05 -41.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593970370.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.438 kcal (2) G-P(sol) polarization free energy of solvation -34.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds