Wall clock time and date at job start Mon Mar 30 2020 06:58:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46493 * 109.47451 * 2 1 4 4 C 1.34773 * 120.00126 * 269.99871 * 3 2 1 5 5 O 1.21295 * 119.99975 * 184.81102 * 4 3 2 6 6 C 1.50696 * 119.99866 * 4.81178 * 4 3 2 7 7 C 1.53005 * 109.46838 * 179.97438 * 6 4 3 8 8 C 1.53003 * 109.46910 * 179.97438 * 7 6 4 9 9 C 1.50697 * 109.47305 * 180.02562 * 8 7 6 10 10 H 1.08001 * 119.99937 * 0.02562 * 9 8 7 11 11 C 1.37875 * 120.00293 * 179.97438 * 9 8 7 12 12 N 1.31515 * 119.99907 * 180.02562 * 11 9 8 13 13 Si 1.86798 * 120.00047 * 0.02562 * 11 9 8 14 14 H 1.48504 * 109.47327 * 89.99359 * 13 11 9 15 15 H 1.48501 * 109.47265 * 209.99565 * 13 11 9 16 16 H 1.48502 * 109.47184 * 329.99758 * 13 11 9 17 17 C 1.39952 * 119.99948 * 90.00028 * 3 2 1 18 18 C 1.39288 * 120.48580 * 247.61954 * 17 3 2 19 19 C 1.38507 * 118.35710 * 179.97438 * 18 17 3 20 20 C 1.38271 * 119.23884 * 0.25601 * 19 18 17 21 21 N 1.31849 * 120.91709 * 359.47052 * 20 19 18 22 22 C 1.31826 * 121.79752 * 0.54198 * 21 20 19 23 23 H 1.09000 * 109.47203 * 300.00388 * 1 2 3 24 24 H 1.09006 * 109.46999 * 60.00052 * 1 2 3 25 25 H 1.08999 * 109.47667 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47203 * 239.99612 * 2 1 3 27 27 H 1.09006 * 109.46999 * 119.99948 * 2 1 3 28 28 H 1.09001 * 109.47161 * 299.99784 * 6 4 3 29 29 H 1.09002 * 109.47272 * 60.00182 * 6 4 3 30 30 H 1.09000 * 109.47785 * 299.99730 * 7 6 4 31 31 H 1.09003 * 109.47217 * 60.00510 * 7 6 4 32 32 H 1.09001 * 109.47228 * 300.00184 * 8 7 6 33 33 H 1.09002 * 109.47133 * 60.00539 * 8 7 6 34 34 H 0.97004 * 119.99926 * 180.02562 * 12 11 9 35 35 H 1.07999 * 120.81889 * 359.95497 * 18 17 3 36 36 H 1.08001 * 120.37667 * 179.97438 * 19 18 17 37 37 H 1.07997 * 119.54024 * 179.72692 * 20 19 18 38 38 H 1.08002 * 119.66586 * 179.70539 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2431 2.0165 -1.1672 5 8 2.7294 3.1276 -1.1690 6 6 1.8900 1.3463 -2.4699 7 6 2.2428 2.2754 -3.6333 8 6 1.8849 1.5948 -4.9560 9 6 2.2329 2.5095 -6.1020 10 1 2.6664 3.4792 -5.9064 11 6 1.9989 2.1081 -7.4001 12 7 2.3031 2.9063 -8.4001 13 14 1.2498 0.4307 -7.7384 14 1 -0.2304 0.5468 -7.7703 15 1 1.7351 -0.0731 -9.0484 16 1 1.6490 -0.5153 -6.6655 17 6 2.2517 2.0408 1.2120 18 6 1.4550 3.1171 1.5955 19 6 1.7246 3.7374 2.8042 20 6 2.7703 3.2754 3.5820 21 7 3.5027 2.2505 3.1928 22 6 3.2802 1.6318 2.0501 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 2.4510 0.4165 -2.5640 29 1 0.8219 1.1298 -2.4894 30 1 1.6814 3.2050 -3.5391 31 1 3.3108 2.4923 -3.6141 32 1 2.4466 0.6653 -5.0501 33 1 0.8169 1.3775 -4.9756 34 1 2.1381 2.6240 -9.3134 35 1 0.6473 3.4597 0.9657 36 1 1.1277 4.5752 3.1333 37 1 2.9876 3.7583 4.5232 38 1 3.9046 0.7987 1.7629 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593970370.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:10 Heat of formation + Delta-G solvation = -31.217446 kcal Electronic energy + Delta-G solvation = -19161.262174 eV Core-core repulsion = 16195.546424 eV Total energy + Delta-G solvation = -2965.715751 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.92151 -40.33566 -37.29069 -36.20254 -34.23447 -33.37285 -32.41486 -30.82055 -29.79242 -26.12824 -24.98934 -24.25025 -23.73875 -21.97143 -20.45538 -18.86348 -18.53505 -17.96021 -17.62905 -17.57370 -16.57068 -16.26314 -15.37579 -15.15090 -14.96070 -14.81826 -14.70799 -14.64241 -14.17606 -13.87341 -13.74721 -13.28346 -13.18331 -12.88339 -12.56611 -12.52007 -12.04479 -11.76776 -11.74017 -11.48936 -11.32179 -11.10224 -11.06406 -10.74472 -10.72244 -10.26220 -9.57348 -8.27123 -6.33099 -0.00980 0.21212 1.39507 1.43293 1.49063 1.55276 1.78502 2.39991 2.73505 3.08148 3.49672 3.61073 3.83286 3.92558 3.99146 4.06239 4.11144 4.16246 4.30295 4.37263 4.56025 4.61445 4.68090 4.85497 4.91583 4.92333 4.98068 5.02922 5.05096 5.10809 5.36074 5.40237 5.54215 5.59270 5.67841 5.81038 6.15783 6.31333 6.75795 6.88906 7.07402 7.31379 8.90656 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.035099 B = 0.003898 C = 0.003672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.562579 B = 7180.609076 C = 7622.525923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.097 3.903 3 N -0.567 5.567 4 C 0.516 3.484 5 O -0.574 6.574 6 C -0.126 4.126 7 C -0.081 4.081 8 C -0.007 4.007 9 C -0.541 4.541 10 H 0.018 0.982 11 C -0.004 4.004 12 N -0.958 5.958 13 Si 0.962 3.038 14 H -0.264 1.264 15 H -0.288 1.288 16 H -0.233 1.233 17 C 0.082 3.918 18 C -0.085 4.085 19 C -0.155 4.155 20 C 0.088 3.912 21 N -0.496 5.496 22 C 0.089 3.911 23 H 0.050 0.950 24 H 0.055 0.945 25 H 0.093 0.907 26 H 0.106 0.894 27 H 0.099 0.901 28 H 0.122 0.878 29 H 0.120 0.880 30 H 0.035 0.965 31 H 0.035 0.965 32 H 0.033 0.967 33 H 0.031 0.969 34 H 0.266 0.734 35 H 0.130 0.870 36 H 0.167 0.833 37 H 0.189 0.811 38 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.702 -9.706 25.351 27.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.023 4.023 3 N -0.298 5.298 4 C 0.308 3.692 5 O -0.452 6.452 6 C -0.165 4.165 7 C -0.120 4.120 8 C -0.045 4.045 9 C -0.579 4.579 10 H 0.036 0.964 11 C -0.200 4.200 12 N -0.599 5.599 13 Si 0.784 3.216 14 H -0.189 1.189 15 H -0.214 1.214 16 H -0.155 1.155 17 C -0.011 4.011 18 C -0.112 4.112 19 C -0.175 4.175 20 C -0.069 4.069 21 N -0.205 5.205 22 C -0.070 4.070 23 H 0.069 0.931 24 H 0.074 0.926 25 H 0.112 0.888 26 H 0.124 0.876 27 H 0.117 0.883 28 H 0.140 0.860 29 H 0.138 0.862 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.051 0.949 33 H 0.049 0.951 34 H 0.075 0.925 35 H 0.148 0.852 36 H 0.185 0.815 37 H 0.206 0.794 38 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -4.764 -9.421 25.690 27.774 hybrid contribution -0.727 0.529 -1.372 1.640 sum -5.491 -8.892 24.318 26.469 Atomic orbital electron populations 1.22203 0.94639 1.03913 1.02056 1.22070 0.95555 0.79051 1.05653 1.45719 1.65807 1.15798 1.02453 1.21451 0.76206 0.85411 0.86169 1.90711 1.44480 1.22212 1.87810 1.21808 1.05269 1.00458 0.88985 1.21069 0.99815 0.97578 0.93507 1.19531 0.97064 0.95881 0.91999 1.21558 1.41477 1.02666 0.92165 0.96406 1.26218 0.95648 1.02528 0.95595 1.70114 1.50384 1.39615 0.99777 0.85490 0.78989 0.78858 0.78255 1.18873 1.21355 1.15543 1.18821 0.96971 0.96659 0.88602 1.21953 0.98095 0.94662 0.96511 1.22421 0.99564 1.01471 0.94052 1.23344 0.91010 0.91952 1.00573 1.67729 1.28050 1.09095 1.15593 1.23080 0.93827 0.99812 0.90242 0.93115 0.92625 0.88797 0.87556 0.88268 0.85977 0.86223 0.94584 0.94586 0.94904 0.95094 0.92518 0.85235 0.81528 0.79441 0.81616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.05 10.23 71.98 0.74 -1.32 16 2 C 0.10 1.30 5.85 86.38 0.51 1.81 16 3 N -0.57 -12.70 2.54 -630.88 -1.61 -14.31 16 4 C 0.52 15.67 7.53 87.66 0.66 16.33 16 5 O -0.57 -23.39 15.75 -3.08 -0.05 -23.44 16 6 C -0.13 -3.52 4.37 29.85 0.13 -3.39 16 7 C -0.08 -3.35 4.44 30.60 0.14 -3.21 16 8 C -0.01 -0.34 4.04 29.85 0.12 -0.22 16 9 C -0.54 -32.32 9.66 25.60 0.25 -32.07 16 10 H 0.02 1.20 7.99 -2.91 -0.02 1.18 16 11 C 0.00 -0.24 5.47 84.65 0.46 0.22 16 12 N -0.96 -61.79 13.96 21.45 0.30 -61.49 16 13 Si 0.96 43.27 27.47 68.60 1.88 45.16 16 14 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 15 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 16 H -0.23 -9.19 6.54 99.48 0.65 -8.53 16 17 C 0.08 1.93 4.77 38.24 0.18 2.11 16 18 C -0.08 -1.89 9.71 22.59 0.22 -1.67 16 19 C -0.16 -2.66 10.10 22.34 0.23 -2.44 16 20 C 0.09 1.54 11.18 84.70 0.95 2.49 16 21 N -0.50 -11.10 10.35 -195.33 -2.02 -13.13 16 22 C 0.09 1.97 10.86 84.84 0.92 2.89 16 23 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 24 H 0.05 0.79 6.95 -2.38 -0.02 0.77 16 25 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.11 1.14 6.47 -2.39 -0.02 1.12 16 27 H 0.10 1.00 7.87 -2.38 -0.02 0.98 16 28 H 0.12 2.69 7.26 -2.39 -0.02 2.67 16 29 H 0.12 2.71 6.95 -2.39 -0.02 2.70 16 30 H 0.04 1.62 8.10 -2.39 -0.02 1.60 16 31 H 0.04 1.62 8.10 -2.39 -0.02 1.60 16 32 H 0.03 1.40 7.20 -2.39 -0.02 1.38 16 33 H 0.03 1.30 7.57 -2.39 -0.02 1.29 16 34 H 0.27 15.88 8.31 -92.71 -0.77 15.10 16 35 H 0.13 2.90 8.06 -2.91 -0.02 2.88 16 36 H 0.17 1.77 8.06 -2.91 -0.02 1.75 16 37 H 0.19 1.95 8.06 -2.91 -0.02 1.93 16 38 H 0.17 3.09 8.06 -2.91 -0.02 3.07 16 Total: -1.00 -80.45 320.32 4.98 -75.47 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: 0.98 Total: 10.19 kcal Atomic # 6 Polarization: -23.95 SS G_CDS: 5.49 Total: -18.45 kcal Atomic # 7 Polarization: -85.59 SS G_CDS: -3.33 Total: -88.92 kcal Atomic # 8 Polarization: -23.39 SS G_CDS: -0.05 Total: -23.44 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 1.88 Total: 45.16 kcal Total: -80.45 4.98 -75.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593970370.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.253 kcal (2) G-P(sol) polarization free energy of solvation -80.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds