Wall clock time and date at job start Mon Mar 30 2020 06:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46497 * 109.47130 * 2 1 4 4 C 1.34780 * 120.00191 * 270.00266 * 3 2 1 5 5 O 1.21273 * 119.99904 * 184.79927 * 4 3 2 6 6 C 1.50705 * 119.99678 * 4.79459 * 4 3 2 7 7 C 1.52998 * 109.46789 * 180.02562 * 6 4 3 8 8 C 1.52994 * 109.47140 * 180.02562 * 7 6 4 9 9 C 1.50702 * 109.47391 * 179.97438 * 8 7 6 10 10 H 1.07997 * 119.99796 * 359.97438 * 9 8 7 11 11 C 1.37877 * 120.00148 * 179.97438 * 9 8 7 12 12 N 1.31517 * 120.00099 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 120.00083 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47131 * 0.02562 * 13 11 9 15 15 H 1.48502 * 109.46880 * 120.00207 * 13 11 9 16 16 H 1.48500 * 109.47273 * 240.00218 * 13 11 9 17 17 C 1.39542 * 120.00189 * 90.00503 * 3 2 1 18 18 C 1.39395 * 120.86145 * 67.58936 * 17 3 2 19 19 C 1.37951 * 119.07332 * 179.97438 * 18 17 3 20 20 N 1.31968 * 120.84092 * 0.02642 * 19 18 17 21 21 C 1.31964 * 121.89270 * 359.95226 * 20 19 18 22 22 C 1.37956 * 120.84043 * 0.04830 * 21 20 19 23 23 H 1.09000 * 109.47346 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.46947 * 299.99939 * 1 2 3 25 25 H 1.09001 * 109.47403 * 59.99651 * 1 2 3 26 26 H 1.09000 * 109.46947 * 240.00061 * 2 1 3 27 27 H 1.09001 * 109.47403 * 120.00349 * 2 1 3 28 28 H 1.08999 * 109.46919 * 299.99675 * 6 4 3 29 29 H 1.08998 * 109.47088 * 60.00072 * 6 4 3 30 30 H 1.09005 * 109.47193 * 299.99820 * 7 6 4 31 31 H 1.08998 * 109.47421 * 60.00062 * 7 6 4 32 32 H 1.08998 * 109.47436 * 299.99865 * 8 7 6 33 33 H 1.08997 * 109.47534 * 59.99891 * 8 7 6 34 34 H 0.96997 * 120.00325 * 179.97438 * 12 11 9 35 35 H 1.07995 * 120.46511 * 359.70927 * 18 17 3 36 36 H 1.08006 * 119.58176 * 180.02562 * 19 18 17 37 37 H 1.08000 * 119.57998 * 180.02562 * 21 20 19 38 38 H 1.07990 * 120.46101 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2429 2.0166 -1.1672 5 8 2.7289 3.1277 -1.1690 6 6 1.8901 1.3463 -2.4700 7 6 2.2438 2.2748 -3.6334 8 6 1.8851 1.5946 -4.9561 9 6 2.2329 2.5095 -6.1020 10 1 2.6661 3.4793 -5.9064 11 6 1.9982 2.1084 -7.4001 12 7 1.4702 0.9277 -7.6383 13 14 2.4300 3.2421 -8.8206 14 1 3.0071 4.5032 -8.2896 15 1 3.4230 2.5761 -9.7012 16 1 1.2036 3.5481 -9.6001 17 6 2.2510 2.0390 1.2084 18 6 3.2815 1.6349 2.0557 19 6 3.4790 2.3119 3.2413 20 7 2.7073 3.3286 3.5765 21 6 1.7221 3.7413 2.8015 22 6 1.4591 3.1176 1.5994 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 2.4515 0.4167 -2.5640 29 1 0.8221 1.1294 -2.4895 30 1 1.6828 3.2047 -3.5397 31 1 3.3119 2.4913 -3.6138 32 1 2.4458 0.6646 -5.0502 33 1 0.8170 1.3785 -4.9756 34 1 1.3047 0.6456 -8.5515 35 1 3.9137 0.8007 1.7897 36 1 4.2753 2.0059 3.9037 37 1 1.1138 4.5777 3.1124 38 1 0.6511 3.4601 0.9702 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593974252.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:23 Heat of formation + Delta-G solvation = -12.443946 kcal Electronic energy + Delta-G solvation = -19100.537589 eV Core-core repulsion = 16135.635918 eV Total energy + Delta-G solvation = -2964.901671 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.94577 -39.30533 -36.31728 -34.35599 -32.61803 -31.76768 -31.43662 -29.97612 -27.95707 -24.58961 -24.12219 -23.30879 -22.70398 -20.47695 -19.33185 -17.64703 -16.91512 -16.69062 -16.17792 -15.93657 -15.24188 -15.00263 -14.44775 -14.03308 -13.96594 -13.87772 -13.74494 -13.54673 -12.76253 -12.44109 -12.08788 -11.99247 -11.84659 -11.62301 -11.22501 -10.83452 -10.64931 -10.54356 -10.16055 -9.92274 -9.72636 -9.67548 -9.35821 -9.32184 -9.04935 -8.87293 -8.35113 -6.00578 -4.01993 0.94639 0.98500 2.67462 2.72997 3.32002 3.39474 3.45264 3.60806 4.27013 4.46844 4.60919 4.65871 4.79053 4.83094 4.92517 5.01476 5.10920 5.18185 5.35758 5.48652 5.51737 5.55662 5.58598 5.60652 5.67753 5.91023 6.04428 6.17978 6.28922 6.64976 6.68410 6.86277 7.09025 7.16630 7.66949 7.77774 7.78736 7.99690 8.20138 8.43536 9.05167 9.62297 11.10913 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.034515 B = 0.003680 C = 0.003472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.056991 B = 7607.884538 C = 8062.326665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.106 3.894 3 N -0.586 5.586 4 C 0.518 3.482 5 O -0.518 6.518 6 C -0.134 4.134 7 C -0.097 4.097 8 C 0.021 3.979 9 C -0.518 4.518 10 H 0.057 0.943 11 C 0.056 3.944 12 N -0.897 5.897 13 Si 0.891 3.109 14 H -0.272 1.272 15 H -0.284 1.284 16 H -0.284 1.284 17 C 0.199 3.801 18 C -0.179 4.179 19 C 0.107 3.893 20 N -0.492 5.492 21 C 0.109 3.891 22 C -0.165 4.165 23 H 0.072 0.928 24 H 0.056 0.944 25 H 0.066 0.934 26 H 0.092 0.908 27 H 0.079 0.921 28 H 0.091 0.909 29 H 0.093 0.907 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.016 0.984 33 H 0.016 0.984 34 H 0.259 0.741 35 H 0.136 0.864 36 H 0.158 0.842 37 H 0.158 0.842 38 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.210 -3.632 20.823 21.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.015 4.015 3 N -0.318 5.318 4 C 0.309 3.691 5 O -0.391 6.391 6 C -0.174 4.174 7 C -0.135 4.135 8 C -0.016 4.016 9 C -0.556 4.556 10 H 0.075 0.925 11 C -0.145 4.145 12 N -0.537 5.537 13 Si 0.719 3.281 14 H -0.197 1.197 15 H -0.210 1.210 16 H -0.210 1.210 17 C 0.099 3.901 18 C -0.201 4.201 19 C -0.050 4.050 20 N -0.201 5.201 21 C -0.048 4.048 22 C -0.186 4.186 23 H 0.091 0.909 24 H 0.075 0.925 25 H 0.085 0.915 26 H 0.110 0.890 27 H 0.097 0.903 28 H 0.109 0.891 29 H 0.111 0.889 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.034 0.966 33 H 0.034 0.966 34 H 0.069 0.931 35 H 0.154 0.846 36 H 0.175 0.825 37 H 0.176 0.824 38 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -0.845 -2.714 21.404 21.592 hybrid contribution -0.019 -0.038 -1.690 1.690 sum -0.864 -2.752 19.714 19.924 Atomic orbital electron populations 1.22236 0.95262 1.02818 1.02924 1.21714 0.95031 0.80848 1.03937 1.45834 1.67331 1.14963 1.03645 1.21529 0.76563 0.86032 0.85022 1.90715 1.41616 1.19818 1.86998 1.21937 1.03202 1.01098 0.91164 1.21492 1.01156 0.97401 0.93421 1.19125 0.96756 0.95811 0.89896 1.21299 1.40909 1.02388 0.91027 0.92523 1.25016 0.95280 0.95202 0.98990 1.69967 1.44367 1.19249 1.20118 0.86539 0.78086 0.81057 0.82380 1.19675 1.21018 1.21014 1.17895 0.92845 0.92847 0.86473 1.22287 0.97939 1.03237 0.96645 1.22626 0.97188 0.90988 0.94180 1.67680 1.05192 1.13321 1.33924 1.22650 0.94022 0.97986 0.90101 1.22332 1.00724 0.97456 0.98107 0.90945 0.92461 0.91540 0.88954 0.90252 0.89073 0.88925 0.92637 0.92629 0.96560 0.96559 0.93100 0.84625 0.82490 0.82447 0.84755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.44 10.23 37.16 0.38 -1.06 16 2 C 0.11 0.95 5.85 -4.04 -0.02 0.93 16 3 N -0.59 -7.32 2.55 -113.26 -0.29 -7.61 16 4 C 0.52 8.34 7.54 -10.98 -0.08 8.26 16 5 O -0.52 -10.46 15.75 5.56 0.09 -10.37 16 6 C -0.13 -2.16 4.37 -27.88 -0.12 -2.28 16 7 C -0.10 -2.05 4.44 -26.73 -0.12 -2.17 16 8 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 9 C -0.52 -14.85 9.11 -34.44 -0.31 -15.16 16 10 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 11 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 12 N -0.90 -26.78 13.29 55.43 0.74 -26.04 16 13 Si 0.89 21.88 29.54 -169.99 -5.02 16.85 16 14 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 15 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 16 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 17 C 0.20 2.49 4.78 -83.49 -0.40 2.09 16 18 C -0.18 -1.92 9.81 -39.26 -0.39 -2.31 16 19 C 0.11 1.11 11.17 -17.60 -0.20 0.91 16 20 N -0.49 -5.85 10.36 -13.34 -0.14 -5.99 16 21 C 0.11 1.22 11.17 -17.60 -0.20 1.02 16 22 C -0.16 -2.00 9.67 -39.25 -0.38 -2.38 16 23 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 24 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.07 0.63 6.95 -51.93 -0.36 0.27 16 26 H 0.09 0.77 6.47 -51.93 -0.34 0.43 16 27 H 0.08 0.57 7.88 -51.93 -0.41 0.16 16 28 H 0.09 1.30 7.26 -51.93 -0.38 0.93 16 29 H 0.09 1.34 6.95 -51.93 -0.36 0.98 16 30 H 0.05 1.23 8.10 -51.93 -0.42 0.81 16 31 H 0.05 1.23 8.10 -51.93 -0.42 0.81 16 32 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 35 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 36 H 0.16 1.13 8.06 -52.48 -0.42 0.71 16 37 H 0.16 1.31 8.06 -52.49 -0.42 0.89 16 38 H 0.13 1.58 8.06 -52.49 -0.42 1.16 16 LS Contribution 323.93 15.07 4.88 4.88 Total: -1.00 -34.05 323.93 -7.42 -41.47 By element: Atomic # 1 Polarization: 2.65 SS G_CDS: -5.61 Total: -2.96 kcal Atomic # 6 Polarization: -8.17 SS G_CDS: -2.07 Total: -10.24 kcal Atomic # 7 Polarization: -39.95 SS G_CDS: 0.31 Total: -39.64 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: 0.09 Total: -10.37 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -34.05 -7.42 -41.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593974252.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.028 kcal (2) G-P(sol) polarization free energy of solvation -34.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds