Wall clock time and date at job start Mon Mar 30 2020 06:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46497 * 109.47130 * 2 1 4 4 C 1.34780 * 120.00191 * 270.00266 * 3 2 1 5 5 O 1.21273 * 119.99904 * 184.79927 * 4 3 2 6 6 C 1.50705 * 119.99678 * 4.79459 * 4 3 2 7 7 C 1.52998 * 109.46789 * 180.02562 * 6 4 3 8 8 C 1.52994 * 109.47140 * 180.02562 * 7 6 4 9 9 C 1.50702 * 109.47391 * 179.97438 * 8 7 6 10 10 H 1.07997 * 119.99796 * 359.97438 * 9 8 7 11 11 C 1.37877 * 120.00148 * 179.97438 * 9 8 7 12 12 N 1.31517 * 120.00099 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 120.00083 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47131 * 0.02562 * 13 11 9 15 15 H 1.48502 * 109.46880 * 120.00207 * 13 11 9 16 16 H 1.48500 * 109.47273 * 240.00218 * 13 11 9 17 17 C 1.39542 * 120.00189 * 90.00503 * 3 2 1 18 18 C 1.39395 * 120.86145 * 67.58936 * 17 3 2 19 19 C 1.37951 * 119.07332 * 179.97438 * 18 17 3 20 20 N 1.31968 * 120.84092 * 0.02642 * 19 18 17 21 21 C 1.31964 * 121.89270 * 359.95226 * 20 19 18 22 22 C 1.37956 * 120.84043 * 0.04830 * 21 20 19 23 23 H 1.09000 * 109.47346 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.46947 * 299.99939 * 1 2 3 25 25 H 1.09001 * 109.47403 * 59.99651 * 1 2 3 26 26 H 1.09000 * 109.46947 * 240.00061 * 2 1 3 27 27 H 1.09001 * 109.47403 * 120.00349 * 2 1 3 28 28 H 1.08999 * 109.46919 * 299.99675 * 6 4 3 29 29 H 1.08998 * 109.47088 * 60.00072 * 6 4 3 30 30 H 1.09005 * 109.47193 * 299.99820 * 7 6 4 31 31 H 1.08998 * 109.47421 * 60.00062 * 7 6 4 32 32 H 1.08998 * 109.47436 * 299.99865 * 8 7 6 33 33 H 1.08997 * 109.47534 * 59.99891 * 8 7 6 34 34 H 0.96997 * 120.00325 * 179.97438 * 12 11 9 35 35 H 1.07995 * 120.46511 * 359.70927 * 18 17 3 36 36 H 1.08006 * 119.58176 * 180.02562 * 19 18 17 37 37 H 1.08000 * 119.57998 * 180.02562 * 21 20 19 38 38 H 1.07990 * 120.46101 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2429 2.0166 -1.1672 5 8 2.7289 3.1277 -1.1690 6 6 1.8901 1.3463 -2.4700 7 6 2.2438 2.2748 -3.6334 8 6 1.8851 1.5946 -4.9561 9 6 2.2329 2.5095 -6.1020 10 1 2.6661 3.4793 -5.9064 11 6 1.9982 2.1084 -7.4001 12 7 1.4702 0.9277 -7.6383 13 14 2.4300 3.2421 -8.8206 14 1 3.0071 4.5032 -8.2896 15 1 3.4230 2.5761 -9.7012 16 1 1.2036 3.5481 -9.6001 17 6 2.2510 2.0390 1.2084 18 6 3.2815 1.6349 2.0557 19 6 3.4790 2.3119 3.2413 20 7 2.7073 3.3286 3.5765 21 6 1.7221 3.7413 2.8015 22 6 1.4591 3.1176 1.5994 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 2.4515 0.4167 -2.5640 29 1 0.8221 1.1294 -2.4895 30 1 1.6828 3.2047 -3.5397 31 1 3.3119 2.4913 -3.6138 32 1 2.4458 0.6646 -5.0502 33 1 0.8170 1.3785 -4.9756 34 1 1.3047 0.6456 -8.5515 35 1 3.9137 0.8007 1.7897 36 1 4.2753 2.0059 3.9037 37 1 1.1138 4.5777 3.1124 38 1 0.6511 3.4601 0.9702 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593974252.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:23 Heat of formation + Delta-G solvation = -33.008841 kcal Electronic energy + Delta-G solvation = -19101.429350 eV Core-core repulsion = 16135.635918 eV Total energy + Delta-G solvation = -2965.793431 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.94845 -40.35153 -37.40012 -36.19977 -34.20550 -33.04470 -32.26239 -30.92474 -29.67548 -26.27217 -24.92900 -24.34336 -23.84471 -22.11175 -20.52640 -18.70286 -18.52241 -17.80827 -17.62509 -16.81578 -16.56016 -16.45751 -15.93664 -15.15235 -14.97762 -14.81745 -14.67403 -14.60812 -14.29422 -13.80021 -13.76907 -13.19804 -12.93169 -12.79132 -12.69073 -12.49039 -12.37188 -12.08817 -11.56242 -11.49360 -11.27531 -11.17561 -10.85453 -10.55055 -10.54562 -10.18419 -9.86150 -8.21010 -6.30541 0.06743 0.13384 1.38820 1.39621 1.44506 1.52933 1.72947 2.41111 2.76354 3.12217 3.52583 3.56506 3.89448 3.90922 4.00363 4.11190 4.14110 4.15048 4.30806 4.34478 4.52739 4.64647 4.69365 4.80517 4.87637 4.93933 4.96177 5.04689 5.16225 5.16943 5.33193 5.45154 5.53083 5.73855 5.78168 5.85362 6.08779 6.27621 6.84654 6.94619 7.00732 7.38161 8.90553 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.034515 B = 0.003680 C = 0.003472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.056991 B = 7607.884538 C = 8062.326665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.098 3.902 3 N -0.573 5.573 4 C 0.521 3.479 5 O -0.568 6.568 6 C -0.124 4.124 7 C -0.083 4.083 8 C 0.028 3.972 9 C -0.547 4.547 10 H 0.049 0.951 11 C 0.005 3.995 12 N -0.927 5.927 13 Si 0.960 3.040 14 H -0.269 1.269 15 H -0.275 1.275 16 H -0.275 1.275 17 C 0.175 3.825 18 C -0.178 4.178 19 C 0.107 3.893 20 N -0.510 5.510 21 C 0.106 3.894 22 C -0.180 4.180 23 H 0.094 0.906 24 H 0.053 0.947 25 H 0.051 0.949 26 H 0.102 0.898 27 H 0.104 0.896 28 H 0.114 0.886 29 H 0.111 0.889 30 H 0.039 0.961 31 H 0.040 0.960 32 H 0.004 0.996 33 H 0.003 0.997 34 H 0.265 0.735 35 H 0.157 0.843 36 H 0.189 0.811 37 H 0.179 0.821 38 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.892 -4.414 21.719 22.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.022 4.022 3 N -0.303 5.303 4 C 0.312 3.688 5 O -0.446 6.446 6 C -0.164 4.164 7 C -0.122 4.122 8 C -0.009 4.009 9 C -0.585 4.585 10 H 0.068 0.932 11 C -0.193 4.193 12 N -0.568 5.568 13 Si 0.785 3.215 14 H -0.194 1.194 15 H -0.200 1.200 16 H -0.201 1.201 17 C 0.076 3.924 18 C -0.200 4.200 19 C -0.050 4.050 20 N -0.219 5.219 21 C -0.050 4.050 22 C -0.202 4.202 23 H 0.112 0.888 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.120 0.880 27 H 0.122 0.878 28 H 0.132 0.868 29 H 0.129 0.871 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.022 0.978 33 H 0.021 0.979 34 H 0.074 0.926 35 H 0.175 0.825 36 H 0.206 0.794 37 H 0.196 0.804 38 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -0.547 -3.536 22.335 22.620 hybrid contribution -0.132 0.159 -1.899 1.910 sum -0.679 -3.377 20.437 20.725 Atomic orbital electron populations 1.22207 0.94706 1.03951 1.02022 1.22053 0.95504 0.78976 1.05678 1.45738 1.65971 1.15913 1.02702 1.21358 0.76133 0.85352 0.85959 1.90695 1.44265 1.21874 1.87761 1.21756 1.04680 1.00495 0.89429 1.21192 0.99835 0.97498 0.93643 1.18999 0.95503 0.95063 0.91366 1.21706 1.41412 1.02764 0.92657 0.93238 1.25866 0.94968 0.96778 1.01703 1.70059 1.44906 1.20719 1.21075 0.85479 0.78192 0.78998 0.78881 1.19381 1.20042 1.20059 1.18178 0.93988 0.93514 0.86694 1.22509 0.97387 1.03736 0.96334 1.23173 0.97285 0.90121 0.94393 1.67749 1.05699 1.14129 1.34358 1.22989 0.94080 0.98338 0.89631 1.22414 1.01142 0.97874 0.98731 0.88773 0.92799 0.93002 0.87989 0.87765 0.86786 0.87111 0.94211 0.94107 0.97779 0.97891 0.92641 0.82518 0.79383 0.80352 0.85285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.49 10.23 71.98 0.74 -1.75 16 2 C 0.10 1.51 5.85 86.38 0.51 2.02 16 3 N -0.57 -13.60 2.55 -630.64 -1.61 -15.21 16 4 C 0.52 16.62 7.54 87.66 0.66 17.28 16 5 O -0.57 -23.37 15.75 -3.01 -0.05 -23.42 16 6 C -0.12 -3.92 4.37 29.85 0.13 -3.79 16 7 C -0.08 -3.62 4.44 30.59 0.14 -3.48 16 8 C 0.03 1.44 4.97 29.85 0.15 1.59 16 9 C -0.55 -31.93 9.11 25.60 0.23 -31.70 16 10 H 0.05 2.88 7.74 -2.91 -0.02 2.86 16 11 C 0.00 0.29 5.46 84.65 0.46 0.75 16 12 N -0.93 -55.52 13.29 21.45 0.28 -55.24 16 13 Si 0.96 44.91 29.54 68.60 2.03 46.94 16 14 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 15 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 16 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 17 C 0.18 4.19 4.78 38.47 0.18 4.37 16 18 C -0.18 -3.45 9.81 22.48 0.22 -3.23 16 19 C 0.11 1.97 11.17 84.60 0.95 2.91 16 20 N -0.51 -11.36 10.36 -196.10 -2.03 -13.39 16 21 C 0.11 2.27 11.17 84.61 0.95 3.22 16 22 C -0.18 -4.32 9.67 22.48 0.22 -4.10 16 23 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 24 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.05 0.91 6.95 -2.39 -0.02 0.90 16 26 H 0.10 1.41 6.47 -2.39 -0.02 1.39 16 27 H 0.10 1.14 7.88 -2.39 -0.02 1.12 16 28 H 0.11 3.07 7.26 -2.39 -0.02 3.06 16 29 H 0.11 3.10 6.95 -2.39 -0.02 3.08 16 30 H 0.04 1.81 8.10 -2.38 -0.02 1.79 16 31 H 0.04 1.86 8.10 -2.39 -0.02 1.84 16 32 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 33 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 34 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 35 H 0.16 2.28 8.06 -2.91 -0.02 2.25 16 36 H 0.19 2.12 8.06 -2.91 -0.02 2.09 16 37 H 0.18 2.81 8.06 -2.91 -0.02 2.79 16 38 H 0.13 3.12 8.06 -2.92 -0.02 3.10 16 Total: -1.00 -74.11 323.93 5.18 -68.93 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: 1.03 Total: 7.30 kcal Atomic # 6 Polarization: -21.43 SS G_CDS: 5.52 Total: -15.90 kcal Atomic # 7 Polarization: -80.48 SS G_CDS: -3.36 Total: -83.83 kcal Atomic # 8 Polarization: -23.37 SS G_CDS: -0.05 Total: -23.42 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -74.11 5.18 -68.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593974252.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.917 kcal (2) G-P(sol) polarization free energy of solvation -74.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds