Wall clock time and date at job start Mon Mar 30 2020 06:35:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50700 * 109.46912 * 2 1 4 4 C 1.35354 * 120.36775 * 265.25433 * 3 2 1 5 5 N 1.35424 * 120.68568 * 180.28470 * 4 3 2 6 6 H 0.96998 * 119.28537 * 179.69213 * 5 4 3 7 7 C 1.35429 * 121.43970 * 359.71495 * 5 4 3 8 8 C 1.35352 * 120.68366 * 0.02562 * 7 5 4 9 9 C 1.41187 * 120.37135 * 85.00344 * 3 2 1 10 10 N 1.34672 * 120.66402 * 359.97438 * 9 3 2 11 11 C 1.32304 * 119.99988 * 174.86465 * 10 9 3 12 12 O 1.21714 * 119.99857 * 64.80557 * 11 10 9 13 13 C 1.50697 * 120.00054 * 244.80828 * 11 10 9 14 14 C 1.53006 * 109.46969 * 179.97438 * 13 11 10 15 15 C 1.53001 * 109.46818 * 180.02562 * 14 13 11 16 16 C 1.50697 * 109.46909 * 180.02562 * 15 14 13 17 17 H 1.08007 * 119.99960 * 0.02562 * 16 15 14 18 18 C 1.37882 * 120.00271 * 179.97438 * 16 15 14 19 19 N 1.31516 * 119.99642 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00290 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46720 * 90.00176 * 20 18 16 22 22 H 1.48494 * 109.47173 * 210.00254 * 20 18 16 23 23 H 1.48498 * 109.47136 * 330.00608 * 20 18 16 24 24 H 1.09002 * 109.47179 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47248 * 300.00347 * 1 2 3 26 26 H 1.09004 * 109.47311 * 59.99842 * 1 2 3 27 27 H 1.08997 * 109.47248 * 239.99653 * 2 1 3 28 28 H 1.09005 * 109.47185 * 119.99621 * 2 1 3 29 29 H 1.08008 * 119.65857 * 0.02562 * 4 3 2 30 30 H 1.07997 * 119.66503 * 179.97438 * 7 5 4 31 31 H 1.07994 * 120.37160 * 179.97438 * 8 7 5 32 32 H 1.08999 * 109.47355 * 299.99957 * 13 11 10 33 33 H 1.09000 * 109.47290 * 59.99975 * 13 11 10 34 34 H 1.08995 * 109.46857 * 300.00150 * 14 13 11 35 35 H 1.09000 * 109.46874 * 60.00040 * 14 13 11 36 36 H 1.09007 * 109.47088 * 299.99893 * 15 14 13 37 37 H 1.08991 * 109.47566 * 59.99977 * 15 14 13 38 38 H 0.97000 * 119.99728 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3514 2.0338 -1.1638 5 7 2.8088 3.3084 -1.1708 6 1 3.0357 3.7264 -2.0162 7 6 2.9568 4.0122 -0.0233 8 6 2.6496 3.4566 1.1722 9 6 2.1702 2.1292 1.2135 10 7 1.8556 1.5487 2.3872 11 6 2.0850 2.1868 3.5233 12 8 1.4859 3.2159 3.7750 13 6 3.0881 1.6394 4.5057 14 6 3.1625 2.5604 5.7253 15 6 4.1814 2.0049 6.7223 16 6 4.2542 2.9117 7.9238 17 1 3.6352 3.7955 7.9716 18 6 5.1101 2.6124 8.9625 19 7 5.8634 1.5359 8.9045 20 14 5.2009 3.7368 10.4515 21 1 4.2122 3.2938 11.4671 22 1 6.5664 3.6800 11.0321 23 1 4.8960 5.1303 10.0388 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3634 0.5139 -0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 2.2442 1.4994 -2.0963 30 1 3.3243 5.0269 -0.0621 31 1 2.7699 4.0222 2.0842 32 1 2.7809 0.6423 4.8211 33 1 4.0682 1.5847 4.0318 34 1 3.4698 3.5572 5.4094 35 1 2.1824 2.6154 6.1992 36 1 3.8743 1.0078 7.0382 37 1 5.1612 1.9502 6.2482 38 1 6.4658 1.3256 9.6351 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593978416.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:35 Heat of formation + Delta-G solvation = -1.551154 kcal Electronic energy + Delta-G solvation = -18813.608471 eV Core-core repulsion = 15849.179148 eV Total energy + Delta-G solvation = -2964.429324 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.04960 -38.97005 -35.71565 -34.13643 -33.80564 -31.89479 -31.00098 -29.91757 -27.69773 -24.73439 -24.44902 -23.04493 -21.84789 -20.15441 -19.19953 -18.75494 -17.15392 -16.57052 -16.10900 -15.30113 -15.08270 -14.64800 -14.43768 -14.25975 -14.07956 -13.90726 -13.53060 -12.80788 -12.55662 -12.24376 -12.17822 -11.66431 -11.40556 -11.23515 -11.08204 -10.88182 -10.69157 -10.46451 -10.44960 -9.97244 -9.73373 -9.51337 -9.26255 -9.00821 -8.66597 -8.22857 -7.43446 -5.88439 -3.89522 0.80503 1.07963 2.57777 2.72990 3.40485 3.45571 3.47801 3.50866 4.19608 4.34264 4.56033 4.63970 4.82603 4.83975 5.18944 5.28031 5.38815 5.40341 5.47015 5.63762 5.79813 5.87988 5.96583 6.00384 6.08548 6.25245 6.31837 6.42871 6.54897 6.61623 6.87863 6.95036 7.12185 7.30823 7.82565 7.97815 8.00563 8.13865 8.58022 8.69728 9.17754 9.73581 11.23130 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.033081 B = 0.003482 C = 0.003335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.199433 B = 8040.326540 C = 8394.023971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.058 4.058 3 C -0.156 4.156 4 C 0.114 3.886 5 N -0.589 5.589 6 H 0.419 0.581 7 C 0.129 3.871 8 C -0.249 4.249 9 C 0.304 3.696 10 N -0.626 5.626 11 C 0.494 3.506 12 O -0.528 6.528 13 C -0.138 4.138 14 C -0.096 4.096 15 C 0.020 3.980 16 C -0.516 4.516 17 H 0.055 0.945 18 C 0.054 3.946 19 N -0.898 5.898 20 Si 0.892 3.108 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.274 1.274 24 H 0.055 0.945 25 H 0.061 0.939 26 H 0.046 0.954 27 H 0.063 0.937 28 H 0.087 0.913 29 H 0.167 0.833 30 H 0.167 0.833 31 H 0.150 0.850 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.049 0.951 35 H 0.052 0.948 36 H 0.016 0.984 37 H 0.015 0.985 38 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.439 0.758 -28.687 29.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.096 4.096 3 C -0.165 4.165 4 C -0.015 4.015 5 N -0.193 5.193 6 H 0.255 0.745 7 C -0.001 4.001 8 C -0.276 4.276 9 C 0.144 3.856 10 N -0.360 5.360 11 C 0.283 3.717 12 O -0.405 6.405 13 C -0.178 4.178 14 C -0.135 4.135 15 C -0.017 4.017 16 C -0.554 4.554 17 H 0.074 0.926 18 C -0.146 4.146 19 N -0.538 5.538 20 Si 0.720 3.280 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.199 1.199 24 H 0.074 0.926 25 H 0.080 0.920 26 H 0.065 0.935 27 H 0.082 0.918 28 H 0.105 0.895 29 H 0.185 0.815 30 H 0.184 0.816 31 H 0.168 0.832 32 H 0.107 0.893 33 H 0.101 0.899 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.034 0.966 37 H 0.033 0.967 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -5.986 0.464 -27.899 28.538 hybrid contribution 0.489 1.338 0.708 1.590 sum -5.498 1.802 -27.191 27.800 Atomic orbital electron populations 1.21693 0.95030 1.01450 1.01903 1.20144 0.95901 0.90646 1.02923 1.19342 1.08192 0.98750 0.90175 1.21607 0.95650 0.84480 0.99773 1.40944 1.56432 1.12281 1.09667 0.74541 1.21755 0.95725 0.97216 0.85401 1.21855 1.09551 0.97611 0.98607 1.18567 0.87552 0.88691 0.90807 1.68363 1.31230 1.38258 0.98149 1.21862 0.80881 0.80791 0.88197 1.90714 1.45836 1.22891 1.81046 1.21873 0.97336 1.02050 0.96529 1.21455 1.00959 0.97302 0.93739 1.19130 0.93351 0.96310 0.92882 1.21304 1.22252 1.09147 1.02690 0.92650 1.25031 0.95723 0.95377 0.98465 1.69976 1.25668 1.25655 1.32498 0.86596 0.77107 0.81248 0.83080 1.20690 1.21303 1.19887 0.92636 0.91977 0.93531 0.91804 0.89484 0.81548 0.81613 0.83248 0.89317 0.89917 0.93242 0.92905 0.96577 0.96709 0.93148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 9.89 37.16 0.37 -0.97 16 2 C -0.06 -0.53 5.80 -27.88 -0.16 -0.70 16 3 C -0.16 -1.54 5.14 -104.53 -0.54 -2.08 16 4 C 0.11 0.60 10.80 -16.99 -0.18 0.42 16 5 N -0.59 -2.25 5.23 -13.04 -0.07 -2.32 16 6 H 0.42 -0.17 8.90 -40.82 -0.36 -0.53 16 7 C 0.13 0.87 11.17 -16.99 -0.19 0.68 16 8 C -0.25 -3.10 9.05 -39.49 -0.36 -3.46 16 9 C 0.30 4.32 6.58 -84.38 -0.56 3.77 16 10 N -0.63 -11.31 9.62 -10.39 -0.10 -11.41 16 11 C 0.49 10.27 6.16 -12.08 -0.07 10.19 16 12 O -0.53 -12.34 15.44 5.18 0.08 -12.26 16 13 C -0.14 -2.90 5.77 -27.88 -0.16 -3.06 16 14 C -0.10 -2.36 4.44 -26.73 -0.12 -2.48 16 15 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 16 C -0.52 -15.77 9.11 -34.44 -0.31 -16.08 16 17 H 0.06 1.67 7.74 -52.48 -0.41 1.26 16 18 C 0.05 1.65 5.46 -17.82 -0.10 1.56 16 19 N -0.90 -28.26 13.29 55.43 0.74 -27.52 16 20 Si 0.89 22.83 29.54 -169.99 -5.02 17.81 16 21 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 22 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 23 H -0.27 -6.88 7.11 56.52 0.40 -6.48 16 24 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 25 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.39 8.05 -51.93 -0.42 -0.03 16 28 H 0.09 1.01 7.72 -51.93 -0.40 0.61 16 29 H 0.17 0.20 8.05 -52.48 -0.42 -0.22 16 30 H 0.17 0.53 8.06 -52.49 -0.42 0.10 16 31 H 0.15 2.27 6.36 -52.49 -0.33 1.94 16 32 H 0.09 1.81 8.14 -51.93 -0.42 1.39 16 33 H 0.08 1.63 8.14 -51.93 -0.42 1.20 16 34 H 0.05 1.22 8.10 -51.93 -0.42 0.80 16 35 H 0.05 1.34 8.10 -51.93 -0.42 0.92 16 36 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.01 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 325.17 15.07 4.90 4.90 Total: -1.00 -39.72 325.17 -7.70 -47.42 By element: Atomic # 1 Polarization: 0.86 SS G_CDS: -5.70 Total: -4.84 kcal Atomic # 6 Polarization: -9.25 SS G_CDS: -2.52 Total: -11.77 kcal Atomic # 7 Polarization: -41.82 SS G_CDS: 0.57 Total: -41.25 kcal Atomic # 8 Polarization: -12.34 SS G_CDS: 0.08 Total: -12.26 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -5.02 Total: 17.81 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -39.72 -7.70 -47.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593978416.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.866 kcal (2) G-P(sol) polarization free energy of solvation -39.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds