Wall clock time and date at job start Mon Mar 30 2020 06:35:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50700 * 109.46912 * 2 1 4 4 C 1.35354 * 120.36775 * 265.25433 * 3 2 1 5 5 N 1.35424 * 120.68568 * 180.28470 * 4 3 2 6 6 H 0.96998 * 119.28537 * 179.69213 * 5 4 3 7 7 C 1.35429 * 121.43970 * 359.71495 * 5 4 3 8 8 C 1.35352 * 120.68366 * 0.02562 * 7 5 4 9 9 C 1.41187 * 120.37135 * 85.00344 * 3 2 1 10 10 N 1.34672 * 120.66402 * 359.97438 * 9 3 2 11 11 C 1.32304 * 119.99988 * 174.86465 * 10 9 3 12 12 O 1.21714 * 119.99857 * 64.80557 * 11 10 9 13 13 C 1.50697 * 120.00054 * 244.80828 * 11 10 9 14 14 C 1.53006 * 109.46969 * 179.97438 * 13 11 10 15 15 C 1.53001 * 109.46818 * 180.02562 * 14 13 11 16 16 C 1.50697 * 109.46909 * 180.02562 * 15 14 13 17 17 H 1.08007 * 119.99960 * 0.02562 * 16 15 14 18 18 C 1.37882 * 120.00271 * 179.97438 * 16 15 14 19 19 N 1.31516 * 119.99642 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00290 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46720 * 90.00176 * 20 18 16 22 22 H 1.48494 * 109.47173 * 210.00254 * 20 18 16 23 23 H 1.48498 * 109.47136 * 330.00608 * 20 18 16 24 24 H 1.09002 * 109.47179 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47248 * 300.00347 * 1 2 3 26 26 H 1.09004 * 109.47311 * 59.99842 * 1 2 3 27 27 H 1.08997 * 109.47248 * 239.99653 * 2 1 3 28 28 H 1.09005 * 109.47185 * 119.99621 * 2 1 3 29 29 H 1.08008 * 119.65857 * 0.02562 * 4 3 2 30 30 H 1.07997 * 119.66503 * 179.97438 * 7 5 4 31 31 H 1.07994 * 120.37160 * 179.97438 * 8 7 5 32 32 H 1.08999 * 109.47355 * 299.99957 * 13 11 10 33 33 H 1.09000 * 109.47290 * 59.99975 * 13 11 10 34 34 H 1.08995 * 109.46857 * 300.00150 * 14 13 11 35 35 H 1.09000 * 109.46874 * 60.00040 * 14 13 11 36 36 H 1.09007 * 109.47088 * 299.99893 * 15 14 13 37 37 H 1.08991 * 109.47566 * 59.99977 * 15 14 13 38 38 H 0.97000 * 119.99728 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3514 2.0338 -1.1638 5 7 2.8088 3.3084 -1.1708 6 1 3.0357 3.7264 -2.0162 7 6 2.9568 4.0122 -0.0233 8 6 2.6496 3.4566 1.1722 9 6 2.1702 2.1292 1.2135 10 7 1.8556 1.5487 2.3872 11 6 2.0850 2.1868 3.5233 12 8 1.4859 3.2159 3.7750 13 6 3.0881 1.6394 4.5057 14 6 3.1625 2.5604 5.7253 15 6 4.1814 2.0049 6.7223 16 6 4.2542 2.9117 7.9238 17 1 3.6352 3.7955 7.9716 18 6 5.1101 2.6124 8.9625 19 7 5.8634 1.5359 8.9045 20 14 5.2009 3.7368 10.4515 21 1 4.2122 3.2938 11.4671 22 1 6.5664 3.6800 11.0321 23 1 4.8960 5.1303 10.0388 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3634 0.5139 -0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 2.2442 1.4994 -2.0963 30 1 3.3243 5.0269 -0.0621 31 1 2.7699 4.0222 2.0842 32 1 2.7809 0.6423 4.8211 33 1 4.0682 1.5847 4.0318 34 1 3.4698 3.5572 5.4094 35 1 2.1824 2.6154 6.1992 36 1 3.8743 1.0078 7.0382 37 1 5.1612 1.9502 6.2482 38 1 6.4658 1.3256 9.6351 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593978416.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:35 Heat of formation + Delta-G solvation = -31.790705 kcal Electronic energy + Delta-G solvation = -18814.919757 eV Core-core repulsion = 15849.179148 eV Total energy + Delta-G solvation = -2965.740609 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.85734 -40.29351 -36.64210 -36.11142 -34.82162 -34.03804 -31.98564 -30.72897 -29.64118 -26.29396 -25.20404 -24.59410 -22.59478 -22.08717 -20.48054 -19.45465 -18.55268 -17.98482 -17.68075 -16.58970 -16.55362 -16.20047 -15.82480 -15.45878 -15.03037 -14.68988 -14.49920 -14.37321 -14.05867 -13.80134 -13.31918 -13.10465 -12.99202 -12.65184 -12.59238 -12.41842 -12.16572 -12.12554 -11.64606 -11.63695 -11.55725 -11.35601 -11.10932 -10.58561 -10.38447 -10.03511 -8.43700 -8.22236 -6.34577 -0.00128 0.32616 1.36642 1.39866 1.41850 1.51429 2.04751 2.39345 2.56718 3.08998 3.34975 3.72203 3.88128 4.06111 4.12724 4.14897 4.21375 4.35345 4.53252 4.63382 4.67211 4.69600 4.84120 4.88968 5.02257 5.06592 5.11057 5.16031 5.26611 5.46510 5.48588 5.60752 5.66032 5.70654 5.80081 5.84083 6.22574 6.33884 6.72742 6.79457 7.33855 7.44794 8.89563 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.033081 B = 0.003482 C = 0.003335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.199433 B = 8040.326540 C = 8394.023971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.054 4.054 3 C -0.197 4.197 4 C 0.166 3.834 5 N -0.551 5.551 6 H 0.452 0.548 7 C 0.183 3.817 8 C -0.309 4.309 9 C 0.297 3.703 10 N -0.692 5.692 11 C 0.504 3.496 12 O -0.581 6.581 13 C -0.132 4.132 14 C -0.078 4.078 15 C 0.028 3.972 16 C -0.550 4.550 17 H 0.052 0.948 18 C 0.001 3.999 19 N -0.931 5.931 20 Si 0.971 3.029 21 H -0.271 1.271 22 H -0.273 1.273 23 H -0.266 1.266 24 H 0.061 0.939 25 H 0.017 0.983 26 H 0.071 0.929 27 H 0.107 0.893 28 H 0.049 0.951 29 H 0.231 0.769 30 H 0.214 0.786 31 H 0.110 0.890 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.041 0.959 35 H 0.035 0.965 36 H -0.006 1.006 37 H -0.001 1.001 38 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.622 2.064 -33.242 33.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.092 4.092 3 C -0.205 4.205 4 C 0.033 3.967 5 N -0.154 5.154 6 H 0.294 0.706 7 C 0.049 3.951 8 C -0.337 4.337 9 C 0.146 3.854 10 N -0.433 5.433 11 C 0.294 3.706 12 O -0.463 6.463 13 C -0.171 4.171 14 C -0.117 4.117 15 C -0.009 4.009 16 C -0.588 4.588 17 H 0.071 0.929 18 C -0.197 4.197 19 N -0.571 5.571 20 Si 0.794 3.206 21 H -0.196 1.196 22 H -0.198 1.198 23 H -0.190 1.190 24 H 0.080 0.920 25 H 0.036 0.964 26 H 0.090 0.910 27 H 0.125 0.875 28 H 0.068 0.932 29 H 0.248 0.752 30 H 0.231 0.769 31 H 0.128 0.872 32 H 0.104 0.896 33 H 0.109 0.891 34 H 0.060 0.940 35 H 0.054 0.946 36 H 0.013 0.987 37 H 0.017 0.983 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.140 1.787 -32.601 33.052 hybrid contribution 0.305 0.997 1.652 1.953 sum -4.835 2.784 -30.950 31.448 Atomic orbital electron populations 1.21665 0.95595 1.01577 1.00865 1.20103 0.95399 0.90553 1.03147 1.19517 1.11373 0.99604 0.90011 1.22444 0.89907 0.84069 1.00235 1.41322 1.51938 1.11733 1.10412 0.70606 1.22235 0.90496 0.98319 0.84060 1.21671 1.14628 0.97552 0.99868 1.19239 0.85433 0.89549 0.91131 1.68096 1.37995 1.38889 0.98341 1.21654 0.79698 0.79804 0.89489 1.90639 1.47948 1.25583 1.82098 1.21728 0.98726 1.00943 0.95744 1.21162 0.98628 0.97534 0.94333 1.19002 0.93364 0.95160 0.93360 1.21651 1.23238 1.09733 1.04169 0.92944 1.26019 0.94769 0.97076 1.01844 1.70098 1.25962 1.27202 1.33819 0.85374 0.77822 0.78970 0.78430 1.19635 1.19838 1.19037 0.91996 0.96383 0.90997 0.87509 0.93241 0.75241 0.76939 0.87182 0.89573 0.89055 0.93982 0.94619 0.98713 0.98255 0.92510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 9.89 71.98 0.71 -1.80 16 2 C -0.05 -0.91 5.80 29.85 0.17 -0.74 16 3 C -0.20 -3.42 5.14 -19.81 -0.10 -3.52 16 4 C 0.17 0.63 10.80 83.47 0.90 1.53 16 5 N -0.55 -0.24 5.23 -195.18 -1.02 -1.27 16 6 H 0.45 -4.49 8.90 -92.71 -0.82 -5.32 16 7 C 0.18 1.63 11.17 83.47 0.93 2.56 16 8 C -0.31 -7.77 9.05 22.33 0.20 -7.57 16 9 C 0.30 8.75 6.58 40.16 0.26 9.02 16 10 N -0.69 -27.68 9.62 -306.35 -2.95 -30.63 16 11 C 0.50 23.38 6.16 88.04 0.54 23.92 16 12 O -0.58 -30.28 15.44 -4.39 -0.07 -30.34 16 13 C -0.13 -6.12 5.77 29.85 0.17 -5.95 16 14 C -0.08 -4.20 4.44 30.60 0.14 -4.06 16 15 C 0.03 1.71 4.97 29.85 0.15 1.86 16 16 C -0.55 -35.16 9.11 25.60 0.23 -34.92 16 17 H 0.05 3.30 7.74 -2.91 -0.02 3.27 16 18 C 0.00 0.04 5.46 84.66 0.46 0.51 16 19 N -0.93 -59.96 13.29 21.45 0.28 -59.67 16 20 Si 0.97 47.57 29.54 68.60 2.03 49.60 16 21 H -0.27 -12.82 7.11 99.48 0.71 -12.11 16 22 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 23 H -0.27 -12.61 7.11 99.48 0.71 -11.91 16 24 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.02 0.46 8.14 -2.39 -0.02 0.44 16 26 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 27 H 0.11 0.83 8.05 -2.39 -0.02 0.81 16 28 H 0.05 1.22 7.72 -2.38 -0.02 1.20 16 29 H 0.23 -1.75 8.05 -2.91 -0.02 -1.78 16 30 H 0.21 0.05 8.06 -2.91 -0.02 0.02 16 31 H 0.11 3.71 6.36 -2.91 -0.02 3.69 16 32 H 0.09 3.94 8.14 -2.39 -0.02 3.92 16 33 H 0.09 3.97 8.14 -2.39 -0.02 3.95 16 34 H 0.04 2.26 8.10 -2.39 -0.02 2.24 16 35 H 0.03 1.98 8.10 -2.39 -0.02 1.96 16 36 H -0.01 -0.35 8.14 -2.38 -0.02 -0.37 16 37 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 38 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 Total: -1.00 -99.89 325.17 3.28 -96.61 By element: Atomic # 1 Polarization: -5.35 SS G_CDS: 0.23 Total: -5.12 kcal Atomic # 6 Polarization: -23.95 SS G_CDS: 4.78 Total: -19.18 kcal Atomic # 7 Polarization: -87.88 SS G_CDS: -3.68 Total: -91.57 kcal Atomic # 8 Polarization: -30.28 SS G_CDS: -0.07 Total: -30.34 kcal Atomic # 14 Polarization: 47.57 SS G_CDS: 2.03 Total: 49.60 kcal Total: -99.89 3.28 -96.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593978416.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.821 kcal (2) G-P(sol) polarization free energy of solvation -99.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds