Wall clock time and date at job start Mon Mar 30 2020 06:29:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38114 * 119.57650 * 2 1 4 4 C 1.38801 * 119.30937 * 179.97438 * 3 2 1 5 5 C 1.38399 * 118.49430 * 0.24581 * 4 3 2 6 6 C 1.38995 * 119.10316 * 359.50980 * 5 4 3 7 7 N 1.39410 * 119.69653 * 180.22444 * 6 5 4 8 8 C 1.46500 * 119.99688 * 265.03197 * 7 6 5 9 9 C 1.34769 * 120.00008 * 85.03908 * 7 6 5 10 10 O 1.21272 * 120.00354 * 5.07242 * 9 7 6 11 11 C 1.50697 * 120.00032 * 185.07968 * 9 7 6 12 12 C 1.53003 * 109.47314 * 179.97438 * 11 9 7 13 13 C 1.53001 * 109.47148 * 179.97438 * 12 11 9 14 14 C 1.50695 * 109.47054 * 180.02562 * 13 12 11 15 15 H 1.08005 * 120.00152 * 359.97438 * 14 13 12 16 16 C 1.37883 * 120.00277 * 180.02562 * 14 13 12 17 17 N 1.31515 * 119.99496 * 359.97438 * 16 14 13 18 18 Si 1.86792 * 120.00127 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47172 * 89.99954 * 18 16 14 20 20 H 1.48508 * 109.47190 * 210.00120 * 18 16 14 21 21 H 1.48502 * 109.47451 * 329.99826 * 18 16 14 22 22 N 1.31907 * 119.57549 * 179.97438 * 2 1 3 23 23 H 1.09007 * 109.47154 * 90.00164 * 1 2 3 24 24 H 1.08998 * 109.47387 * 210.00331 * 1 2 3 25 25 H 1.09002 * 109.47454 * 330.00037 * 1 2 3 26 26 H 1.08002 * 120.34481 * 359.95119 * 3 2 1 27 27 H 1.08003 * 120.75234 * 179.97438 * 4 3 2 28 28 H 1.07998 * 120.44763 * 179.74891 * 5 4 3 29 29 H 1.09002 * 109.46842 * 90.00248 * 8 7 6 30 30 H 1.09006 * 109.47226 * 209.99776 * 8 7 6 31 31 H 1.08996 * 109.47618 * 330.00107 * 8 7 6 32 32 H 1.09006 * 109.47625 * 299.99814 * 11 9 7 33 33 H 1.09009 * 109.47493 * 59.99782 * 11 9 7 34 34 H 1.08999 * 109.47383 * 300.00122 * 12 11 9 35 35 H 1.09004 * 109.46628 * 60.00542 * 12 11 9 36 36 H 1.08999 * 109.47095 * 300.00319 * 13 12 11 37 37 H 1.09001 * 109.47205 * 60.00036 * 13 12 11 38 38 H 0.97005 * 119.99704 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1886 1.2012 0.0000 4 6 3.5766 1.1947 0.0005 5 6 4.2312 -0.0247 -0.0042 6 6 3.4810 -1.1948 0.0012 7 7 4.1276 -2.4298 0.0013 8 6 4.3652 -3.1323 -1.2622 9 6 4.5340 -2.9775 1.1636 10 8 4.2569 -2.4422 2.2159 11 6 5.3331 -4.2552 1.1558 12 6 5.6648 -4.6581 2.5941 13 6 6.4756 -5.9557 2.5861 14 6 6.8017 -6.3528 4.0027 15 1 6.4648 -5.7408 4.8264 16 6 7.5312 -7.4971 4.2474 17 7 7.9418 -8.2420 3.2444 18 14 7.9360 -7.9890 6.0033 19 1 6.8577 -8.8611 6.5342 20 1 9.2251 -8.7260 6.0262 21 1 8.0472 -6.7710 6.8456 22 7 2.1580 -1.1472 0.0005 23 1 -0.3634 0.0000 -1.0277 24 1 -0.3634 -0.8899 0.5139 25 1 -0.3634 0.8900 0.5138 26 1 1.6474 2.1358 -0.0008 27 1 4.1332 2.1203 0.0001 28 1 5.3104 -0.0665 -0.0080 29 1 5.3308 -2.8318 -1.6689 30 1 4.3641 -4.2080 -1.0856 31 1 3.5775 -2.8799 -1.9720 32 1 4.7506 -5.0453 0.6820 33 1 6.2579 -4.1021 0.5993 34 1 6.2476 -3.8680 3.0676 35 1 4.7403 -4.8113 3.1508 36 1 5.8925 -6.7455 2.1127 37 1 7.4000 -5.8030 2.0292 38 1 8.4553 -9.0468 3.4165 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593979921.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:04 Heat of formation + Delta-G solvation = -8.814857 kcal Electronic energy + Delta-G solvation = -18851.015397 eV Core-core repulsion = 15886.271096 eV Total energy + Delta-G solvation = -2964.744301 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.89012 -39.22098 -35.72487 -34.23341 -33.10022 -32.28994 -31.60749 -28.25856 -27.62608 -26.69188 -24.51354 -22.90790 -22.39089 -20.41486 -19.22296 -17.32881 -16.79850 -16.71423 -16.28026 -15.98558 -15.32125 -14.52932 -14.38766 -14.32388 -13.75555 -13.44033 -13.24609 -12.80496 -12.68118 -12.56425 -12.48172 -12.23023 -12.10387 -11.78326 -11.35664 -10.79392 -10.58711 -10.52265 -10.08951 -9.92693 -9.72067 -9.65676 -9.29862 -9.08976 -8.99615 -8.82573 -8.30443 -5.96293 -3.97476 0.83217 1.07953 2.70287 2.83145 3.36245 3.41882 3.46902 3.49735 4.23290 4.50639 4.52930 4.76485 4.85009 4.92051 5.00739 5.12002 5.30016 5.32092 5.35293 5.36318 5.39909 5.56553 5.68002 5.71801 5.77395 5.87311 5.94960 6.18857 6.22744 6.72695 6.79487 6.93806 7.16299 7.28078 7.72241 7.81402 7.84958 8.04409 8.33596 8.48550 9.09478 9.66377 11.15246 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.038623 B = 0.003349 C = 0.003279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.786067 B = 8358.433685 C = 8536.436321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.139 3.861 3 C -0.176 4.176 4 C -0.065 4.065 5 C -0.162 4.162 6 C 0.363 3.637 7 N -0.581 5.581 8 C 0.086 3.914 9 C 0.522 3.478 10 O -0.522 6.522 11 C -0.132 4.132 12 C -0.096 4.096 13 C 0.021 3.979 14 C -0.518 4.518 15 H 0.056 0.944 16 C 0.056 3.944 17 N -0.898 5.898 18 Si 0.892 3.108 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.274 1.274 22 N -0.485 5.485 23 H 0.078 0.922 24 H 0.078 0.922 25 H 0.076 0.924 26 H 0.137 0.863 27 H 0.139 0.861 28 H 0.136 0.864 29 H 0.062 0.938 30 H 0.084 0.916 31 H 0.069 0.931 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.016 0.984 37 H 0.016 0.984 38 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.688 18.068 -13.157 24.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.000 4.000 3 C -0.196 4.196 4 C -0.091 4.091 5 C -0.184 4.184 6 C 0.137 3.863 7 N -0.316 5.316 8 C -0.056 4.056 9 C 0.313 3.687 10 O -0.396 6.396 11 C -0.172 4.172 12 C -0.134 4.134 13 C -0.016 4.016 14 C -0.556 4.556 15 H 0.074 0.926 16 C -0.145 4.145 17 N -0.537 5.537 18 Si 0.720 3.280 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.198 1.198 22 N -0.198 5.198 23 H 0.096 0.904 24 H 0.097 0.903 25 H 0.094 0.906 26 H 0.155 0.845 27 H 0.157 0.843 28 H 0.154 0.846 29 H 0.081 0.919 30 H 0.103 0.897 31 H 0.088 0.912 32 H 0.110 0.890 33 H 0.111 0.889 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.035 0.965 37 H 0.035 0.965 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -11.191 17.379 -12.600 24.208 hybrid contribution 0.780 0.373 0.791 1.172 sum -10.411 17.752 -11.809 23.727 Atomic orbital electron populations 1.20732 0.88619 1.03703 1.03045 1.21113 0.96893 0.87521 0.94442 1.21968 0.94949 0.99260 1.03408 1.21499 0.94374 0.97948 0.95287 1.22089 1.01628 0.92334 1.02323 1.18107 0.87220 0.85950 0.95015 1.45475 1.58289 1.19159 1.08680 1.21863 1.01470 0.98054 0.84255 1.21491 0.78706 0.86673 0.81858 1.90696 1.55416 1.62967 1.30472 1.21891 0.99449 0.92726 1.03113 1.21490 1.00853 1.00076 0.91028 1.19124 0.94589 0.90665 0.97198 1.21273 1.33528 1.08047 0.92768 0.92584 1.25017 0.95951 0.96511 0.97026 1.69964 1.37930 1.15346 1.30505 0.86591 0.77673 0.78625 0.85116 1.20670 1.21264 1.19843 1.67144 1.09666 1.30376 1.12570 0.90362 0.90321 0.90555 0.84544 0.84340 0.84584 0.91925 0.89694 0.91199 0.88966 0.88935 0.92646 0.92649 0.96537 0.96529 0.93075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.85 10.17 36.00 0.37 -0.48 16 2 C 0.14 1.61 6.78 -82.61 -0.56 1.05 16 3 C -0.18 -1.66 9.73 -39.42 -0.38 -2.04 16 4 C -0.06 -0.63 10.17 -39.31 -0.40 -1.03 16 5 C -0.16 -1.98 10.02 -39.24 -0.39 -2.37 16 6 C 0.36 5.34 5.44 -154.69 -0.84 4.50 16 7 N -0.58 -8.50 2.97 -122.77 -0.36 -8.86 16 8 C 0.09 0.88 10.19 59.85 0.61 1.49 16 9 C 0.52 9.31 7.63 -10.99 -0.08 9.23 16 10 O -0.52 -11.45 15.96 5.56 0.09 -11.36 16 11 C -0.13 -2.26 4.37 -27.88 -0.12 -2.38 16 12 C -0.10 -2.13 4.44 -26.73 -0.12 -2.25 16 13 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 14 C -0.52 -15.14 9.11 -34.44 -0.31 -15.45 16 15 H 0.06 1.62 7.74 -52.48 -0.41 1.22 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 17 N -0.90 -27.20 13.29 55.43 0.74 -26.46 16 18 Si 0.89 22.20 29.54 -169.99 -5.02 17.18 16 19 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 21 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 22 N -0.49 -7.20 10.30 -8.60 -0.09 -7.29 16 23 H 0.08 0.52 8.14 -51.92 -0.42 0.09 16 24 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.08 0.45 8.08 -51.93 -0.42 0.04 16 26 H 0.14 0.84 8.06 -52.49 -0.42 0.41 16 27 H 0.14 0.90 8.06 -52.48 -0.42 0.47 16 28 H 0.14 1.49 8.06 -52.49 -0.42 1.07 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.08 0.81 6.48 -51.93 -0.34 0.47 16 31 H 0.07 0.65 8.05 -51.93 -0.42 0.23 16 32 H 0.09 1.43 7.25 -51.93 -0.38 1.05 16 33 H 0.09 1.40 8.14 -51.92 -0.42 0.98 16 34 H 0.05 1.27 8.10 -51.93 -0.42 0.85 16 35 H 0.05 1.28 8.10 -51.93 -0.42 0.86 16 36 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 326.99 15.07 4.93 4.93 Total: -1.00 -35.87 326.99 -7.94 -43.81 By element: Atomic # 1 Polarization: 1.60 SS G_CDS: -5.74 Total: -4.13 kcal Atomic # 6 Polarization: -5.31 SS G_CDS: -2.48 Total: -7.79 kcal Atomic # 7 Polarization: -42.90 SS G_CDS: 0.28 Total: -42.62 kcal Atomic # 8 Polarization: -11.45 SS G_CDS: 0.09 Total: -11.36 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -35.87 -7.94 -43.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593979921.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.992 kcal (2) G-P(sol) polarization free energy of solvation -35.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds