Wall clock time and date at job start Mon Mar 30 2020 06:29:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38114 * 119.57650 * 2 1 4 4 C 1.38801 * 119.30937 * 179.97438 * 3 2 1 5 5 C 1.38399 * 118.49430 * 0.24581 * 4 3 2 6 6 C 1.38995 * 119.10316 * 359.50980 * 5 4 3 7 7 N 1.39410 * 119.69653 * 180.22444 * 6 5 4 8 8 C 1.46500 * 119.99688 * 265.03197 * 7 6 5 9 9 C 1.34769 * 120.00008 * 85.03908 * 7 6 5 10 10 O 1.21272 * 120.00354 * 5.07242 * 9 7 6 11 11 C 1.50697 * 120.00032 * 185.07968 * 9 7 6 12 12 C 1.53003 * 109.47314 * 179.97438 * 11 9 7 13 13 C 1.53001 * 109.47148 * 179.97438 * 12 11 9 14 14 C 1.50695 * 109.47054 * 180.02562 * 13 12 11 15 15 H 1.08005 * 120.00152 * 359.97438 * 14 13 12 16 16 C 1.37883 * 120.00277 * 180.02562 * 14 13 12 17 17 N 1.31515 * 119.99496 * 359.97438 * 16 14 13 18 18 Si 1.86792 * 120.00127 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47172 * 89.99954 * 18 16 14 20 20 H 1.48508 * 109.47190 * 210.00120 * 18 16 14 21 21 H 1.48502 * 109.47451 * 329.99826 * 18 16 14 22 22 N 1.31907 * 119.57549 * 179.97438 * 2 1 3 23 23 H 1.09007 * 109.47154 * 90.00164 * 1 2 3 24 24 H 1.08998 * 109.47387 * 210.00331 * 1 2 3 25 25 H 1.09002 * 109.47454 * 330.00037 * 1 2 3 26 26 H 1.08002 * 120.34481 * 359.95119 * 3 2 1 27 27 H 1.08003 * 120.75234 * 179.97438 * 4 3 2 28 28 H 1.07998 * 120.44763 * 179.74891 * 5 4 3 29 29 H 1.09002 * 109.46842 * 90.00248 * 8 7 6 30 30 H 1.09006 * 109.47226 * 209.99776 * 8 7 6 31 31 H 1.08996 * 109.47618 * 330.00107 * 8 7 6 32 32 H 1.09006 * 109.47625 * 299.99814 * 11 9 7 33 33 H 1.09009 * 109.47493 * 59.99782 * 11 9 7 34 34 H 1.08999 * 109.47383 * 300.00122 * 12 11 9 35 35 H 1.09004 * 109.46628 * 60.00542 * 12 11 9 36 36 H 1.08999 * 109.47095 * 300.00319 * 13 12 11 37 37 H 1.09001 * 109.47205 * 60.00036 * 13 12 11 38 38 H 0.97005 * 119.99704 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1886 1.2012 0.0000 4 6 3.5766 1.1947 0.0005 5 6 4.2312 -0.0247 -0.0042 6 6 3.4810 -1.1948 0.0012 7 7 4.1276 -2.4298 0.0013 8 6 4.3652 -3.1323 -1.2622 9 6 4.5340 -2.9775 1.1636 10 8 4.2569 -2.4422 2.2159 11 6 5.3331 -4.2552 1.1558 12 6 5.6648 -4.6581 2.5941 13 6 6.4756 -5.9557 2.5861 14 6 6.8017 -6.3528 4.0027 15 1 6.4648 -5.7408 4.8264 16 6 7.5312 -7.4971 4.2474 17 7 7.9418 -8.2420 3.2444 18 14 7.9360 -7.9890 6.0033 19 1 6.8577 -8.8611 6.5342 20 1 9.2251 -8.7260 6.0262 21 1 8.0472 -6.7710 6.8456 22 7 2.1580 -1.1472 0.0005 23 1 -0.3634 0.0000 -1.0277 24 1 -0.3634 -0.8899 0.5139 25 1 -0.3634 0.8900 0.5138 26 1 1.6474 2.1358 -0.0008 27 1 4.1332 2.1203 0.0001 28 1 5.3104 -0.0665 -0.0080 29 1 5.3308 -2.8318 -1.6689 30 1 4.3641 -4.2080 -1.0856 31 1 3.5775 -2.8799 -1.9720 32 1 4.7506 -5.0453 0.6820 33 1 6.2579 -4.1021 0.5993 34 1 6.2476 -3.8680 3.0676 35 1 4.7403 -4.8113 3.1508 36 1 5.8925 -6.7455 2.1127 37 1 7.4000 -5.8030 2.0292 38 1 8.4553 -9.0468 3.4165 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593979921.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:04 Heat of formation + Delta-G solvation = -31.292975 kcal Electronic energy + Delta-G solvation = -18851.990121 eV Core-core repulsion = 15886.271096 eV Total energy + Delta-G solvation = -2965.719026 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.91072 -40.38918 -36.90646 -36.16222 -34.15011 -33.86185 -32.73321 -29.88172 -28.60869 -27.64104 -26.21416 -24.23819 -23.25135 -22.12451 -20.53961 -18.56254 -18.44648 -17.77754 -17.64453 -17.06891 -16.62984 -16.47406 -15.41074 -15.28833 -15.12771 -14.67657 -14.22961 -14.10158 -13.93646 -13.81090 -13.48887 -13.24072 -13.19037 -13.08784 -12.88325 -12.64093 -12.51398 -12.39404 -11.58060 -11.50017 -11.28442 -11.07641 -10.85426 -10.76855 -10.54309 -9.99916 -9.81333 -8.20482 -6.30237 -0.03256 0.26296 1.39407 1.40536 1.42244 1.52062 1.70498 2.41540 2.64757 3.12513 3.39673 3.64487 3.85350 3.98491 4.09815 4.13885 4.15022 4.19336 4.38322 4.54373 4.58761 4.68371 4.72515 4.77334 4.85117 4.93516 5.05439 5.08953 5.13807 5.16387 5.17214 5.40180 5.52816 5.74290 5.83996 5.85483 6.09881 6.28084 6.84536 6.89153 7.07189 7.38193 8.91054 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.038623 B = 0.003349 C = 0.003279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.786067 B = 8358.433685 C = 8536.436321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.119 3.881 3 C -0.166 4.166 4 C -0.061 4.061 5 C -0.175 4.175 6 C 0.325 3.675 7 N -0.573 5.573 8 C 0.078 3.922 9 C 0.523 3.477 10 O -0.575 6.575 11 C -0.121 4.121 12 C -0.083 4.083 13 C 0.028 3.972 14 C -0.549 4.549 15 H 0.049 0.951 16 C 0.004 3.996 17 N -0.928 5.928 18 Si 0.961 3.039 19 H -0.272 1.272 20 H -0.276 1.276 21 H -0.269 1.269 22 N -0.523 5.523 23 H 0.094 0.906 24 H 0.060 0.940 25 H 0.102 0.898 26 H 0.176 0.824 27 H 0.175 0.825 28 H 0.142 0.858 29 H 0.086 0.914 30 H 0.092 0.908 31 H 0.078 0.922 32 H 0.111 0.889 33 H 0.118 0.882 34 H 0.041 0.959 35 H 0.036 0.964 36 H 0.002 0.998 37 H 0.005 0.995 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.986 19.665 -13.790 26.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.020 4.020 3 C -0.185 4.185 4 C -0.087 4.087 5 C -0.197 4.197 6 C 0.100 3.900 7 N -0.306 5.306 8 C -0.063 4.063 9 C 0.314 3.686 10 O -0.453 6.453 11 C -0.161 4.161 12 C -0.121 4.121 13 C -0.009 4.009 14 C -0.587 4.587 15 H 0.068 0.932 16 C -0.194 4.194 17 N -0.568 5.568 18 Si 0.786 3.214 19 H -0.198 1.198 20 H -0.202 1.202 21 H -0.193 1.193 22 N -0.236 5.236 23 H 0.113 0.887 24 H 0.079 0.921 25 H 0.121 0.879 26 H 0.194 0.806 27 H 0.193 0.807 28 H 0.160 0.840 29 H 0.105 0.895 30 H 0.111 0.889 31 H 0.097 0.903 32 H 0.130 0.870 33 H 0.136 0.864 34 H 0.060 0.940 35 H 0.055 0.945 36 H 0.021 0.979 37 H 0.024 0.976 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -11.496 18.981 -13.293 25.868 hybrid contribution 0.815 -0.049 0.906 1.219 sum -10.681 18.932 -12.388 25.019 Atomic orbital electron populations 1.20816 0.86625 1.04109 1.04206 1.21775 0.98425 0.87619 0.94182 1.22422 0.95070 0.99991 1.01045 1.21972 0.94883 0.98297 0.93551 1.22271 1.02026 0.92696 1.02735 1.18405 0.87797 0.86345 0.97441 1.45427 1.56949 1.19395 1.08817 1.22155 1.03133 0.98207 0.82791 1.21425 0.78550 0.86496 0.82161 1.90663 1.57751 1.64426 1.32484 1.21720 1.01021 0.93328 0.99991 1.21192 0.98959 0.97690 0.94255 1.18996 0.94300 0.92011 0.95575 1.21683 1.34270 1.08690 0.94069 0.93229 1.25888 0.95544 0.96319 1.01622 1.70061 1.38264 1.15762 1.32711 0.85507 0.77880 0.78412 0.79623 1.19777 1.20153 1.19346 1.67087 1.09980 1.32449 1.14108 0.88740 0.92114 0.87893 0.80614 0.80725 0.84038 0.89506 0.88947 0.90299 0.87047 0.86434 0.93975 0.94486 0.97932 0.97635 0.92612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.48 10.17 71.23 0.72 -0.75 16 2 C 0.12 2.60 6.78 42.52 0.29 2.88 16 3 C -0.17 -2.65 9.73 22.37 0.22 -2.43 16 4 C -0.06 -1.03 10.17 22.44 0.23 -0.80 16 5 C -0.18 -4.13 10.02 22.49 0.23 -3.91 16 6 C 0.32 9.53 5.44 132.89 0.72 10.25 16 7 N -0.57 -16.69 2.97 -660.74 -1.96 -18.66 16 8 C 0.08 1.51 10.19 127.77 1.30 2.81 16 9 C 0.52 18.92 7.63 87.66 0.67 19.59 16 10 O -0.58 -26.18 15.96 -3.00 -0.05 -26.23 16 11 C -0.12 -4.15 4.37 29.85 0.13 -4.02 16 12 C -0.08 -3.77 4.44 30.60 0.14 -3.63 16 13 C 0.03 1.51 4.97 29.85 0.15 1.66 16 14 C -0.55 -32.74 9.11 25.60 0.23 -32.51 16 15 H 0.05 2.94 7.74 -2.91 -0.02 2.92 16 16 C 0.00 0.26 5.46 84.66 0.46 0.72 16 17 N -0.93 -56.51 13.29 21.45 0.28 -56.22 16 18 Si 0.96 45.62 29.54 68.60 2.03 47.65 16 19 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 20 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 21 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 22 N -0.52 -15.53 10.30 -181.12 -1.87 -17.40 16 23 H 0.09 1.06 8.14 -2.38 -0.02 1.04 16 24 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 25 H 0.10 0.93 8.08 -2.39 -0.02 0.91 16 26 H 0.18 1.34 8.06 -2.91 -0.02 1.31 16 27 H 0.18 1.57 8.06 -2.91 -0.02 1.55 16 28 H 0.14 3.01 8.06 -2.91 -0.02 2.99 16 29 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.09 1.63 6.48 -2.38 -0.02 1.62 16 31 H 0.08 1.40 8.05 -2.39 -0.02 1.38 16 32 H 0.11 3.38 7.25 -2.38 -0.02 3.36 16 33 H 0.12 3.42 8.14 -2.38 -0.02 3.41 16 34 H 0.04 1.99 8.10 -2.39 -0.02 1.97 16 35 H 0.04 1.78 8.10 -2.38 -0.02 1.76 16 36 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 37 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 38 H 0.27 15.08 8.31 -92.70 -0.77 14.31 16 Total: -1.00 -80.12 326.99 4.95 -75.17 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: 1.03 Total: 5.83 kcal Atomic # 6 Polarization: -15.62 SS G_CDS: 5.49 Total: -10.13 kcal Atomic # 7 Polarization: -88.74 SS G_CDS: -3.55 Total: -92.28 kcal Atomic # 8 Polarization: -26.18 SS G_CDS: -0.05 Total: -26.23 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Total: -80.12 4.95 -75.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593979921.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.874 kcal (2) G-P(sol) polarization free energy of solvation -80.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds