Wall clock time and date at job start Mon Mar 30 2020 06:32:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38837 * 120.74931 * 2 1 4 4 C 1.38072 * 119.30981 * 180.02562 * 3 2 1 5 5 C 1.50701 * 119.57652 * 180.02562 * 4 3 2 6 6 N 1.31939 * 120.84928 * 359.72329 * 4 3 2 7 7 C 1.32353 * 121.63367 * 0.56741 * 6 4 3 8 8 N 1.39401 * 119.69589 * 179.70853 * 7 6 4 9 9 C 1.34781 * 120.00073 * 4.80157 * 8 7 6 10 10 O 1.21279 * 119.99751 * 354.91374 * 9 8 7 11 11 C 1.50694 * 120.00253 * 174.91936 * 9 8 7 12 12 C 1.52997 * 109.47464 * 179.97438 * 11 9 8 13 13 C 1.52995 * 109.47177 * 179.97438 * 12 11 9 14 14 C 1.50703 * 109.47188 * 179.97438 * 13 12 11 15 15 H 1.08006 * 119.99910 * 0.02562 * 14 13 12 16 16 C 1.37871 * 120.00197 * 179.97438 * 14 13 12 17 17 N 1.31513 * 120.00055 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00005 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47512 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.47347 * 120.00023 * 18 16 14 21 21 H 1.48503 * 109.46996 * 239.99714 * 18 16 14 22 22 C 1.38351 * 120.75434 * 180.02562 * 2 1 3 23 23 H 1.08997 * 109.47497 * 269.97421 * 1 2 3 24 24 H 1.09004 * 109.47344 * 29.97951 * 1 2 3 25 25 H 1.09005 * 109.46990 * 149.97511 * 1 2 3 26 26 H 1.08004 * 120.34699 * 0.02562 * 3 2 1 27 27 H 1.09006 * 109.47087 * 90.00361 * 5 4 3 28 28 H 1.09001 * 109.47079 * 209.99608 * 5 4 3 29 29 H 1.08997 * 109.47421 * 330.00287 * 5 4 3 30 30 H 0.96992 * 120.00036 * 184.79845 * 8 7 6 31 31 H 1.09007 * 109.46536 * 299.99786 * 11 9 8 32 32 H 1.09000 * 109.47554 * 59.99351 * 11 9 8 33 33 H 1.08997 * 109.47210 * 299.99768 * 12 11 9 34 34 H 1.09005 * 109.46688 * 59.99629 * 12 11 9 35 35 H 1.09001 * 109.47542 * 299.99540 * 13 12 11 36 36 H 1.09000 * 109.47514 * 59.99828 * 13 12 11 37 37 H 0.97004 * 120.00022 * 179.97438 * 17 16 14 38 38 H 1.07999 * 120.44983 * 359.95351 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1932 0.0000 4 6 3.5971 1.1585 -0.0005 5 6 4.3737 2.4500 0.0000 6 7 4.2450 0.0092 0.0044 7 6 3.6043 -1.1489 -0.0011 8 7 4.3295 -2.3394 -0.0017 9 6 5.6731 -2.3101 0.1010 10 8 6.2582 -1.2478 0.1010 11 6 6.4483 -3.5973 0.2158 12 6 7.9427 -3.2853 0.3175 13 6 8.7297 -4.5922 0.4346 14 6 10.2017 -4.2849 0.5342 15 1 10.5418 -3.2600 0.5162 16 6 11.1141 -5.3121 0.6493 17 7 10.6998 -6.5601 0.6727 18 14 12.9386 -4.9312 0.7734 19 1 13.1419 -3.4611 0.7244 20 1 13.4691 -5.4623 2.0546 21 1 13.6554 -5.5677 -0.3608 22 6 2.2145 -1.1889 -0.0005 23 1 -0.3634 -0.0005 1.0276 24 1 -0.3634 0.8902 -0.5135 25 1 -0.3633 -0.8898 -0.5142 26 1 1.6948 2.1387 0.0004 27 1 4.5613 2.7607 1.0279 28 1 5.3235 2.3032 -0.5142 29 1 3.7980 3.2204 -0.5130 30 1 3.8673 -3.1889 -0.0760 31 1 6.1277 -4.1362 1.1074 32 1 6.2650 -4.2117 -0.6657 33 1 8.2630 -2.7467 -0.5743 34 1 8.1264 -2.6707 1.1988 35 1 8.4094 -5.1305 1.3266 36 1 8.5460 -5.2071 -0.4464 37 1 11.3417 -7.2828 0.7533 38 1 1.6943 -2.1354 -0.0002 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593998151.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:00 Heat of formation + Delta-G solvation = -17.242714 kcal Electronic energy + Delta-G solvation = -18584.274708 eV Core-core repulsion = 15619.164947 eV Total energy + Delta-G solvation = -2965.109761 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.83893 -39.07748 -35.17677 -34.28230 -34.10886 -32.13143 -31.30737 -28.32290 -27.90341 -27.28728 -24.29693 -22.58690 -21.85311 -20.28392 -19.65664 -17.47992 -16.99985 -16.17975 -16.06901 -15.66686 -15.54945 -14.68064 -14.40169 -14.02003 -13.61549 -13.51963 -13.39901 -12.96852 -12.74115 -12.41537 -12.29990 -12.27902 -11.88951 -11.76909 -11.35812 -10.81568 -10.61201 -10.50461 -10.47619 -10.01106 -9.66670 -9.53037 -9.36639 -9.09193 -8.85374 -8.31318 -8.25061 -5.96731 -3.97905 1.01695 1.20503 2.90014 2.93748 3.34855 3.42092 3.48218 3.80005 4.22539 4.44080 4.50670 4.73866 4.90752 4.97525 5.13938 5.21706 5.23056 5.39576 5.40876 5.45735 5.55024 5.60062 5.66802 5.69062 5.85121 5.98555 6.13527 6.23194 6.28456 6.72606 6.76464 6.92989 7.16441 7.25609 7.72080 7.84366 8.04056 8.08715 8.46159 8.48640 9.09436 9.66155 11.14866 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.041548 B = 0.003180 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.758167 B = 8801.771986 C = 9433.164462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.015 4.015 3 C -0.215 4.215 4 C 0.164 3.836 5 C -0.104 4.104 6 N -0.480 5.480 7 C 0.376 3.624 8 N -0.669 5.669 9 C 0.500 3.500 10 O -0.466 6.466 11 C -0.136 4.136 12 C -0.095 4.095 13 C 0.020 3.980 14 C -0.517 4.517 15 H 0.057 0.943 16 C 0.055 3.945 17 N -0.898 5.898 18 Si 0.892 3.108 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.284 1.284 22 C -0.224 4.224 23 H 0.076 0.924 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.131 0.869 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.416 0.584 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.016 0.984 36 H 0.016 0.984 37 H 0.259 0.741 38 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.807 12.070 -1.653 25.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.023 4.023 3 C -0.237 4.237 4 C 0.025 3.975 5 C -0.161 4.161 6 N -0.197 5.197 7 C 0.144 3.856 8 N -0.316 5.316 9 C 0.287 3.713 10 O -0.334 6.334 11 C -0.176 4.176 12 C -0.134 4.134 13 C -0.017 4.017 14 C -0.555 4.555 15 H 0.075 0.925 16 C -0.146 4.146 17 N -0.538 5.538 18 Si 0.720 3.280 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.247 4.247 23 H 0.095 0.905 24 H 0.090 0.910 25 H 0.089 0.911 26 H 0.149 0.851 27 H 0.097 0.903 28 H 0.099 0.901 29 H 0.092 0.908 30 H 0.252 0.748 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.034 0.966 36 H 0.034 0.966 37 H 0.069 0.931 38 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -21.273 12.597 -1.614 24.776 hybrid contribution -0.220 -0.539 0.057 0.585 sum -21.493 12.057 -1.557 24.693 Atomic orbital electron populations 1.20803 0.90206 1.03217 1.02826 1.20023 0.96395 0.92303 0.93584 1.21686 0.94695 0.98490 1.08786 1.21195 0.90849 0.93485 0.91978 1.20722 1.00612 0.91592 1.03179 1.67555 1.39468 0.96528 1.16112 1.18545 0.87747 0.86745 0.92551 1.44005 1.08126 1.06766 1.72711 1.21602 0.80898 0.93114 0.75726 1.90783 1.67709 1.32022 1.42879 1.21889 0.98473 0.93384 1.03866 1.21466 0.89292 1.00815 1.01783 1.19134 0.94333 0.91108 0.97099 1.21313 0.91767 0.92927 1.49490 0.92494 1.25020 0.99020 0.95085 0.95430 1.69973 1.34139 0.98570 1.51112 0.86536 0.85424 0.78541 0.77543 1.19661 1.21045 1.21046 1.21291 0.92542 0.99404 1.11494 0.90527 0.91021 0.91075 0.85118 0.90330 0.90071 0.90833 0.74767 0.89091 0.89134 0.92565 0.92588 0.96567 0.96564 0.93132 0.84893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.68 10.06 36.01 0.36 -0.32 16 2 C -0.02 -0.14 5.91 -104.36 -0.62 -0.76 16 3 C -0.22 -2.21 9.44 -39.42 -0.37 -2.59 16 4 C 0.16 2.14 6.78 -82.61 -0.56 1.58 16 5 C -0.10 -1.08 10.17 36.01 0.37 -0.71 16 6 N -0.48 -7.86 7.80 -8.60 -0.07 -7.93 16 7 C 0.38 5.31 7.42 -154.71 -1.15 4.16 16 8 N -0.67 -8.83 5.39 -11.43 -0.06 -8.89 16 9 C 0.50 8.49 7.79 -10.99 -0.09 8.40 16 10 O -0.47 -9.90 14.25 5.56 0.08 -9.82 16 11 C -0.14 -2.25 5.70 -27.89 -0.16 -2.41 16 12 C -0.10 -2.08 4.44 -26.74 -0.12 -2.20 16 13 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 14 C -0.52 -15.08 9.11 -34.44 -0.31 -15.40 16 15 H 0.06 1.65 7.74 -52.48 -0.41 1.24 16 16 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 17 N -0.90 -27.26 13.29 55.43 0.74 -26.52 16 18 Si 0.89 22.20 29.54 -169.99 -5.02 17.18 16 19 H -0.27 -6.69 7.11 56.52 0.40 -6.28 16 20 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 22 C -0.22 -2.38 9.64 -39.24 -0.38 -2.76 16 23 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 24 H 0.07 0.35 8.10 -51.93 -0.42 -0.07 16 25 H 0.07 0.36 8.10 -51.93 -0.42 -0.06 16 26 H 0.13 0.98 8.06 -52.48 -0.42 0.56 16 27 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.07 0.55 8.08 -51.93 -0.42 0.13 16 30 H 0.42 3.72 8.70 -40.82 -0.36 3.36 16 31 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 32 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 33 H 0.06 1.28 8.10 -51.93 -0.42 0.86 16 34 H 0.06 1.28 8.10 -51.93 -0.42 0.86 16 35 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 38 H 0.13 1.02 8.06 -52.49 -0.42 0.59 16 LS Contribution 326.81 15.07 4.93 4.93 Total: -1.00 -35.88 326.81 -8.47 -44.36 By element: Atomic # 1 Polarization: 3.60 SS G_CDS: -5.80 Total: -2.20 kcal Atomic # 6 Polarization: -7.84 SS G_CDS: -3.26 Total: -11.10 kcal Atomic # 7 Polarization: -43.95 SS G_CDS: 0.61 Total: -43.34 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: 0.08 Total: -9.82 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -35.88 -8.47 -44.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593998151.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.114 kcal (2) G-P(sol) polarization free energy of solvation -35.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds