Wall clock time and date at job start Mon Mar 30 2020 06:31:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38837 * 120.74931 * 2 1 4 4 C 1.38072 * 119.30981 * 180.02562 * 3 2 1 5 5 C 1.50701 * 119.57652 * 180.02562 * 4 3 2 6 6 N 1.31939 * 120.84928 * 359.72329 * 4 3 2 7 7 C 1.32353 * 121.63367 * 0.56741 * 6 4 3 8 8 N 1.39401 * 119.69589 * 179.70853 * 7 6 4 9 9 C 1.34781 * 120.00073 * 4.80157 * 8 7 6 10 10 O 1.21279 * 119.99751 * 354.91374 * 9 8 7 11 11 C 1.50694 * 120.00253 * 174.91936 * 9 8 7 12 12 C 1.52997 * 109.47464 * 179.97438 * 11 9 8 13 13 C 1.52995 * 109.47177 * 179.97438 * 12 11 9 14 14 C 1.50703 * 109.47188 * 179.97438 * 13 12 11 15 15 H 1.08006 * 119.99910 * 0.02562 * 14 13 12 16 16 C 1.37871 * 120.00197 * 179.97438 * 14 13 12 17 17 N 1.31513 * 120.00055 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00005 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47512 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.47347 * 120.00023 * 18 16 14 21 21 H 1.48503 * 109.46996 * 239.99714 * 18 16 14 22 22 C 1.38351 * 120.75434 * 180.02562 * 2 1 3 23 23 H 1.08997 * 109.47497 * 269.97421 * 1 2 3 24 24 H 1.09004 * 109.47344 * 29.97951 * 1 2 3 25 25 H 1.09005 * 109.46990 * 149.97511 * 1 2 3 26 26 H 1.08004 * 120.34699 * 0.02562 * 3 2 1 27 27 H 1.09006 * 109.47087 * 90.00361 * 5 4 3 28 28 H 1.09001 * 109.47079 * 209.99608 * 5 4 3 29 29 H 1.08997 * 109.47421 * 330.00287 * 5 4 3 30 30 H 0.96992 * 120.00036 * 184.79845 * 8 7 6 31 31 H 1.09007 * 109.46536 * 299.99786 * 11 9 8 32 32 H 1.09000 * 109.47554 * 59.99351 * 11 9 8 33 33 H 1.08997 * 109.47210 * 299.99768 * 12 11 9 34 34 H 1.09005 * 109.46688 * 59.99629 * 12 11 9 35 35 H 1.09001 * 109.47542 * 299.99540 * 13 12 11 36 36 H 1.09000 * 109.47514 * 59.99828 * 13 12 11 37 37 H 0.97004 * 120.00022 * 179.97438 * 17 16 14 38 38 H 1.07999 * 120.44983 * 359.95351 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1932 0.0000 4 6 3.5971 1.1585 -0.0005 5 6 4.3737 2.4500 0.0000 6 7 4.2450 0.0092 0.0044 7 6 3.6043 -1.1489 -0.0011 8 7 4.3295 -2.3394 -0.0017 9 6 5.6731 -2.3101 0.1010 10 8 6.2582 -1.2478 0.1010 11 6 6.4483 -3.5973 0.2158 12 6 7.9427 -3.2853 0.3175 13 6 8.7297 -4.5922 0.4346 14 6 10.2017 -4.2849 0.5342 15 1 10.5418 -3.2600 0.5162 16 6 11.1141 -5.3121 0.6493 17 7 10.6998 -6.5601 0.6727 18 14 12.9386 -4.9312 0.7734 19 1 13.1419 -3.4611 0.7244 20 1 13.4691 -5.4623 2.0546 21 1 13.6554 -5.5677 -0.3608 22 6 2.2145 -1.1889 -0.0005 23 1 -0.3634 -0.0005 1.0276 24 1 -0.3634 0.8902 -0.5135 25 1 -0.3633 -0.8898 -0.5142 26 1 1.6948 2.1387 0.0004 27 1 4.5613 2.7607 1.0279 28 1 5.3235 2.3032 -0.5142 29 1 3.7980 3.2204 -0.5130 30 1 3.8673 -3.1889 -0.0760 31 1 6.1277 -4.1362 1.1074 32 1 6.2650 -4.2117 -0.6657 33 1 8.2630 -2.7467 -0.5743 34 1 8.1264 -2.6707 1.1988 35 1 8.4094 -5.1305 1.3266 36 1 8.5460 -5.2071 -0.4464 37 1 11.3417 -7.2828 0.7533 38 1 1.6943 -2.1354 -0.0002 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593998151.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:59 Heat of formation + Delta-G solvation = -40.019473 kcal Electronic energy + Delta-G solvation = -18585.262382 eV Core-core repulsion = 15619.164947 eV Total energy + Delta-G solvation = -2966.097435 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.83812 -40.25893 -36.43018 -35.96821 -35.00791 -34.05997 -32.40804 -29.83638 -28.84071 -28.14882 -26.08099 -23.84193 -22.89891 -21.87641 -20.88108 -18.80085 -18.19154 -18.03816 -16.93711 -16.86483 -16.71443 -16.41155 -15.77761 -15.23031 -14.89930 -14.59319 -14.27832 -14.08856 -13.80359 -13.61518 -13.48526 -13.30464 -13.09446 -13.05208 -12.63202 -12.57920 -12.50173 -12.39296 -11.59187 -11.50044 -11.48073 -11.29465 -11.07071 -10.55405 -10.35442 -9.99847 -9.19578 -8.21446 -6.31121 0.11560 0.37513 1.38467 1.38749 1.52728 1.67259 1.88994 2.40939 2.88467 3.11574 3.31576 3.75816 3.81504 4.05975 4.15174 4.23361 4.24213 4.31652 4.56548 4.64907 4.73978 4.76325 4.79910 4.85847 4.94479 4.99725 5.07568 5.07840 5.17611 5.26272 5.35657 5.45679 5.53222 5.74269 5.85615 5.89871 6.23107 6.28848 6.84146 7.02929 7.37376 7.39995 8.90307 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.041548 B = 0.003180 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.758167 B = 8801.771986 C = 9433.164462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.018 4.018 3 C -0.205 4.205 4 C 0.132 3.868 5 C -0.100 4.100 6 N -0.533 5.533 7 C 0.340 3.660 8 N -0.653 5.653 9 C 0.504 3.496 10 O -0.520 6.520 11 C -0.125 4.125 12 C -0.082 4.082 13 C 0.027 3.973 14 C -0.547 4.547 15 H 0.049 0.951 16 C 0.004 3.996 17 N -0.929 5.929 18 Si 0.961 3.039 19 H -0.269 1.269 20 H -0.274 1.274 21 H -0.274 1.274 22 C -0.213 4.213 23 H 0.089 0.911 24 H 0.085 0.915 25 H 0.084 0.916 26 H 0.162 0.838 27 H 0.081 0.919 28 H 0.054 0.946 29 H 0.105 0.895 30 H 0.435 0.565 31 H 0.114 0.886 32 H 0.115 0.885 33 H 0.039 0.961 34 H 0.038 0.962 35 H 0.003 0.997 36 H 0.003 0.997 37 H 0.265 0.735 38 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.091 12.342 -1.696 28.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.026 4.026 3 C -0.226 4.226 4 C -0.006 4.006 5 C -0.158 4.158 6 N -0.250 5.250 7 C 0.109 3.891 8 N -0.302 5.302 9 C 0.291 3.709 10 O -0.392 6.392 11 C -0.165 4.165 12 C -0.121 4.121 13 C -0.010 4.010 14 C -0.585 4.585 15 H 0.067 0.933 16 C -0.194 4.194 17 N -0.569 5.569 18 Si 0.786 3.214 19 H -0.194 1.194 20 H -0.200 1.200 21 H -0.200 1.200 22 C -0.236 4.236 23 H 0.107 0.893 24 H 0.104 0.896 25 H 0.103 0.897 26 H 0.180 0.820 27 H 0.100 0.900 28 H 0.073 0.927 29 H 0.123 0.877 30 H 0.276 0.724 31 H 0.132 0.868 32 H 0.133 0.867 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.021 0.979 36 H 0.022 0.978 37 H 0.074 0.926 38 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -23.621 12.856 -1.662 26.944 hybrid contribution 0.373 -0.592 0.068 0.703 sum -23.248 12.264 -1.594 26.333 Atomic orbital electron populations 1.20883 0.87089 1.04661 1.03988 1.20553 0.98485 0.91552 0.91988 1.22050 0.93625 1.00355 1.06563 1.21630 0.92498 0.93229 0.93222 1.20760 0.99740 0.91807 1.03464 1.67418 1.41818 0.98152 1.17647 1.18882 0.89153 0.86281 0.94767 1.43649 1.06814 1.07937 1.71776 1.21498 0.82152 0.92161 0.75041 1.90768 1.69109 1.33549 1.45744 1.21705 0.94741 0.93907 1.06115 1.21165 0.92714 0.98024 1.00169 1.19010 0.93723 0.92611 0.95670 1.21715 0.93781 0.92844 1.50208 0.93256 1.25891 1.03961 0.94855 0.94738 1.70067 1.35971 0.99451 1.51404 0.85454 0.79418 0.78450 0.78082 1.19376 1.19976 1.19968 1.21636 0.91004 1.01425 1.09554 0.89282 0.89585 0.89736 0.82038 0.90003 0.92689 0.87670 0.72426 0.86837 0.86732 0.94188 0.94284 0.97874 0.97825 0.92620 0.81712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.84 10.06 71.24 0.72 -0.12 16 2 C -0.02 -0.29 5.91 -19.69 -0.12 -0.40 16 3 C -0.20 -3.76 9.44 22.37 0.21 -3.55 16 4 C 0.13 3.42 6.78 42.50 0.29 3.71 16 5 C -0.10 -2.12 10.17 71.24 0.72 -1.40 16 6 N -0.53 -17.90 7.80 -181.11 -1.41 -19.32 16 7 C 0.34 9.44 7.42 132.92 0.99 10.43 16 8 N -0.65 -16.83 5.39 -308.45 -1.66 -18.49 16 9 C 0.50 17.38 7.79 87.65 0.68 18.06 16 10 O -0.52 -23.15 14.25 -3.03 -0.04 -23.19 16 11 C -0.12 -4.12 5.70 29.85 0.17 -3.95 16 12 C -0.08 -3.73 4.44 30.59 0.14 -3.59 16 13 C 0.03 1.44 4.97 29.85 0.15 1.59 16 14 C -0.55 -32.75 9.11 25.60 0.23 -32.52 16 15 H 0.05 2.94 7.74 -2.91 -0.02 2.92 16 16 C 0.00 0.21 5.46 84.65 0.46 0.67 16 17 N -0.93 -56.75 13.29 21.44 0.28 -56.46 16 18 Si 0.96 45.84 29.54 68.60 2.03 47.86 16 19 H -0.27 -12.61 7.11 99.48 0.71 -11.91 16 20 H -0.27 -12.58 7.11 99.48 0.71 -11.88 16 21 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 22 C -0.21 -4.02 9.64 22.49 0.22 -3.80 16 23 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 24 H 0.09 0.45 8.10 -2.38 -0.02 0.44 16 25 H 0.08 0.46 8.10 -2.38 -0.02 0.45 16 26 H 0.16 1.84 8.06 -2.91 -0.02 1.82 16 27 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16 28 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.10 1.43 8.08 -2.39 -0.02 1.41 16 30 H 0.44 7.00 8.70 -92.71 -0.81 6.20 16 31 H 0.11 3.24 8.14 -2.38 -0.02 3.22 16 32 H 0.11 3.23 8.14 -2.39 -0.02 3.21 16 33 H 0.04 1.90 8.10 -2.39 -0.02 1.88 16 34 H 0.04 1.86 8.10 -2.38 -0.02 1.84 16 35 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 36 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 37 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 38 H 0.17 1.90 8.06 -2.91 -0.02 1.88 16 Total: -1.00 -81.04 326.81 4.29 -76.75 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: 0.24 Total: 7.72 kcal Atomic # 6 Polarization: -19.73 SS G_CDS: 4.86 Total: -14.87 kcal Atomic # 7 Polarization: -91.48 SS G_CDS: -2.79 Total: -94.27 kcal Atomic # 8 Polarization: -23.15 SS G_CDS: -0.04 Total: -23.19 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.86 kcal Total: -81.04 4.29 -76.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593998151.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.731 kcal (2) G-P(sol) polarization free energy of solvation -81.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds