Wall clock time and date at job start Mon Mar 30 2020 06:35:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50702 * 109.47033 * 2 1 4 4 C 1.38403 * 120.44665 * 264.98198 * 3 2 1 5 5 C 1.38798 * 118.49195 * 180.02562 * 4 3 2 6 6 C 1.38108 * 119.31302 * 359.97438 * 5 4 3 7 7 N 1.31907 * 120.84313 * 359.72846 * 6 5 4 8 8 C 1.32375 * 121.63659 * 0.56283 * 7 6 5 9 9 N 1.39415 * 119.69596 * 179.71473 * 8 7 6 10 10 C 1.34773 * 119.99816 * 359.72246 * 9 8 7 11 11 O 1.21283 * 120.00360 * 359.73094 * 10 9 8 12 12 C 1.50706 * 120.00081 * 180.02562 * 10 9 8 13 13 C 1.52998 * 109.47348 * 179.72561 * 12 10 9 14 14 C 1.52996 * 109.46929 * 179.97438 * 13 12 10 15 15 C 1.50709 * 109.47079 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99331 * 0.02562 * 15 14 13 17 17 C 1.37869 * 120.00242 * 179.97438 * 15 14 13 18 18 N 1.31520 * 120.00070 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00390 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47408 * 89.99806 * 19 17 15 21 21 H 1.48501 * 109.47447 * 210.00334 * 19 17 15 22 22 H 1.48505 * 109.46796 * 330.00178 * 19 17 15 23 23 H 1.09001 * 109.47103 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.46787 * 300.00098 * 1 2 3 25 25 H 1.09004 * 109.47106 * 59.99943 * 1 2 3 26 26 H 1.09003 * 109.46819 * 240.00359 * 2 1 3 27 27 H 1.08996 * 109.47397 * 120.00076 * 2 1 3 28 28 H 1.08000 * 120.75367 * 0.03705 * 4 3 2 29 29 H 1.08007 * 120.34430 * 179.97438 * 5 4 3 30 30 H 1.07995 * 119.58341 * 180.02562 * 6 5 4 31 31 H 0.96998 * 119.99658 * 179.73161 * 9 8 7 32 32 H 1.09001 * 109.46564 * 299.73030 * 12 10 9 33 33 H 1.08998 * 109.47012 * 59.72084 * 12 10 9 34 34 H 1.09000 * 109.46986 * 300.00089 * 13 12 10 35 35 H 1.09002 * 109.46857 * 60.00224 * 13 12 10 36 36 H 1.09000 * 109.47441 * 299.99910 * 14 13 12 37 37 H 1.08994 * 109.47235 * 60.00181 * 14 13 12 38 38 H 0.96994 * 120.00439 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3645 2.0473 -1.1886 5 6 2.8235 3.3563 -1.1414 6 6 2.9339 3.9905 0.0805 7 7 2.6042 3.3698 1.1968 8 6 2.1680 2.1200 1.1935 9 7 1.8364 1.5011 2.3980 10 6 1.9660 2.1732 3.5590 11 8 2.3756 3.3147 3.5565 12 6 1.6082 1.5040 4.8610 13 6 1.8514 2.4756 6.0176 14 6 1.4875 1.7964 7.3393 15 6 1.7265 2.7536 8.4786 16 1 2.1002 3.7472 8.2795 17 6 1.4672 2.3614 9.7746 18 7 1.0117 1.1516 10.0168 19 14 1.7641 3.5476 11.1867 20 1 0.5300 4.3334 11.4409 21 1 2.1246 2.7833 12.4078 22 1 2.8738 4.4692 10.8339 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5138 0.8899 28 1 2.2686 1.5294 -2.1314 29 1 3.0916 3.8737 -2.0508 30 1 3.2901 5.0091 0.1223 31 1 1.5126 0.5868 2.4003 32 1 0.5573 1.2149 4.8441 33 1 2.2268 0.6167 4.9956 34 1 2.9023 2.7646 6.0344 35 1 1.2326 3.3628 5.8830 36 1 0.4366 1.5077 7.3223 37 1 2.1059 0.9090 7.4741 38 1 0.8296 0.8754 10.9286 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593998910.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:03 Heat of formation + Delta-G solvation = -14.717178 kcal Electronic energy + Delta-G solvation = -18835.565390 eV Core-core repulsion = 15870.565145 eV Total energy + Delta-G solvation = -2965.000245 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.95419 -38.96182 -35.46533 -34.46250 -34.06207 -32.09197 -31.32277 -29.57427 -27.78374 -24.64524 -24.52238 -23.05435 -21.58087 -20.61550 -19.78584 -18.20031 -17.01029 -16.20659 -15.85786 -15.59141 -15.52755 -14.77503 -14.40246 -14.33879 -14.17206 -13.64981 -13.27280 -13.15251 -12.85371 -12.43183 -12.26543 -11.82003 -11.67071 -11.41579 -11.29106 -10.81558 -10.70784 -10.62052 -10.52114 -10.01345 -9.76378 -9.66146 -9.36543 -9.10418 -8.85952 -8.30844 -8.24173 -5.96543 -3.97824 0.98270 1.21583 2.91629 2.92754 3.36221 3.41895 3.47094 3.82424 4.27682 4.49139 4.50579 4.60202 4.76951 4.91319 5.00521 5.07092 5.12751 5.28842 5.39655 5.51420 5.55586 5.62551 5.68007 5.68219 5.87780 5.91211 6.05919 6.20712 6.24249 6.71284 6.72230 6.92524 7.15913 7.22291 7.71774 7.84213 8.04018 8.04591 8.44532 8.48322 9.09229 9.66172 11.15006 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.036464 B = 0.003420 C = 0.003164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.695838 B = 8184.547103 C = 8847.318602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.078 4.078 3 C -0.178 4.178 4 C -0.049 4.049 5 C -0.211 4.211 6 C 0.128 3.872 7 N -0.474 5.474 8 C 0.371 3.629 9 N -0.668 5.668 10 C 0.499 3.501 11 O -0.466 6.466 12 C -0.137 4.137 13 C -0.096 4.096 14 C 0.021 3.979 15 C -0.518 4.518 16 H 0.056 0.944 17 C 0.055 3.945 18 N -0.898 5.898 19 Si 0.892 3.108 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.273 1.273 23 H 0.062 0.938 24 H 0.056 0.944 25 H 0.057 0.943 26 H 0.077 0.923 27 H 0.071 0.929 28 H 0.133 0.867 29 H 0.132 0.868 30 H 0.156 0.844 31 H 0.414 0.586 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.016 0.984 37 H 0.016 0.984 38 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.497 -3.629 -24.837 25.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.116 4.116 3 C -0.184 4.184 4 C -0.075 4.075 5 C -0.233 4.233 6 C -0.030 4.030 7 N -0.188 5.188 8 C 0.139 3.861 9 N -0.316 5.316 10 C 0.286 3.714 11 O -0.334 6.334 12 C -0.177 4.177 13 C -0.134 4.134 14 C -0.016 4.016 15 C -0.556 4.556 16 H 0.075 0.925 17 C -0.145 4.145 18 N -0.538 5.538 19 Si 0.720 3.280 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.198 1.198 23 H 0.081 0.919 24 H 0.075 0.925 25 H 0.076 0.924 26 H 0.096 0.904 27 H 0.089 0.911 28 H 0.151 0.849 29 H 0.150 0.850 30 H 0.174 0.826 31 H 0.252 0.748 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.034 0.966 37 H 0.034 0.966 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.804 -2.467 -23.730 23.871 hybrid contribution -0.110 -0.334 -0.062 0.357 sum 0.694 -2.801 -23.792 23.966 Atomic orbital electron populations 1.21804 0.94437 1.02086 1.02529 1.20414 0.96329 0.91751 1.03154 1.20287 1.07256 0.98247 0.92582 1.21217 0.94740 0.94359 0.97185 1.22005 1.05476 0.96240 0.99581 1.22698 0.93809 0.99592 0.86923 1.67756 1.12874 1.07508 1.30684 1.18445 0.92841 0.89386 0.85440 1.44084 1.65502 1.17548 1.04447 1.21614 0.77593 0.87203 0.84999 1.90787 1.39589 1.16855 1.86174 1.21895 1.03172 1.01202 0.91383 1.21469 1.01542 0.96970 0.93380 1.19130 0.96716 0.95837 0.89960 1.21274 1.43268 0.99670 0.91379 0.92542 1.25016 0.95326 0.95224 0.98951 1.69960 1.45656 1.17955 1.20223 0.86587 0.78606 0.81035 0.81766 1.20677 1.21276 1.19811 0.91898 0.92451 0.92391 0.90416 0.91096 0.84882 0.84999 0.82636 0.74794 0.89119 0.89115 0.92554 0.92559 0.96567 0.96555 0.93077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.89 37.16 0.37 -0.66 16 2 C -0.08 -0.56 5.51 -27.88 -0.15 -0.72 16 3 C -0.18 -1.82 5.17 -104.28 -0.54 -2.36 16 4 C -0.05 -0.43 9.83 -39.31 -0.39 -0.82 16 5 C -0.21 -1.96 10.11 -39.42 -0.40 -2.36 16 6 C 0.13 1.55 11.18 -17.57 -0.20 1.36 16 7 N -0.47 -7.56 7.87 -12.37 -0.10 -7.66 16 8 C 0.37 5.11 7.41 -154.69 -1.15 3.96 16 9 N -0.67 -8.82 5.30 -11.43 -0.06 -8.88 16 10 C 0.50 8.45 7.79 -10.98 -0.09 8.37 16 11 O -0.47 -9.87 14.23 5.56 0.08 -9.79 16 12 C -0.14 -2.26 5.70 -27.88 -0.16 -2.42 16 13 C -0.10 -2.08 4.44 -26.73 -0.12 -2.20 16 14 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 15 C -0.52 -15.09 9.11 -34.44 -0.31 -15.40 16 16 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 18 N -0.90 -27.20 13.29 55.43 0.74 -26.46 16 19 Si 0.89 22.18 29.54 -169.99 -5.02 17.16 16 20 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 22 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 23 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 24 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.08 0.44 8.06 -51.93 -0.42 0.02 16 27 H 0.07 0.47 6.83 -51.93 -0.35 0.11 16 28 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 29 H 0.13 0.84 8.06 -52.48 -0.42 0.41 16 30 H 0.16 1.54 8.06 -52.49 -0.42 1.12 16 31 H 0.41 3.96 6.79 -40.82 -0.28 3.68 16 32 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 33 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 34 H 0.06 1.28 8.10 -51.93 -0.42 0.86 16 35 H 0.06 1.28 8.10 -51.93 -0.42 0.86 16 36 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 323.23 15.07 4.87 4.87 Total: -1.00 -35.47 323.23 -8.52 -43.99 By element: Atomic # 1 Polarization: 3.75 SS G_CDS: -5.66 Total: -1.91 kcal Atomic # 6 Polarization: -7.96 SS G_CDS: -3.37 Total: -11.32 kcal Atomic # 7 Polarization: -43.58 SS G_CDS: 0.58 Total: -43.00 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: 0.08 Total: -9.79 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -35.47 -8.52 -43.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593998910.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.271 kcal (2) G-P(sol) polarization free energy of solvation -35.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds