Wall clock time and date at job start Mon Mar 30 2020 06:35:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50702 * 109.47033 * 2 1 4 4 C 1.38403 * 120.44665 * 264.98198 * 3 2 1 5 5 C 1.38798 * 118.49195 * 180.02562 * 4 3 2 6 6 C 1.38108 * 119.31302 * 359.97438 * 5 4 3 7 7 N 1.31907 * 120.84313 * 359.72846 * 6 5 4 8 8 C 1.32375 * 121.63659 * 0.56283 * 7 6 5 9 9 N 1.39415 * 119.69596 * 179.71473 * 8 7 6 10 10 C 1.34773 * 119.99816 * 359.72246 * 9 8 7 11 11 O 1.21283 * 120.00360 * 359.73094 * 10 9 8 12 12 C 1.50706 * 120.00081 * 180.02562 * 10 9 8 13 13 C 1.52998 * 109.47348 * 179.72561 * 12 10 9 14 14 C 1.52996 * 109.46929 * 179.97438 * 13 12 10 15 15 C 1.50709 * 109.47079 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99331 * 0.02562 * 15 14 13 17 17 C 1.37869 * 120.00242 * 179.97438 * 15 14 13 18 18 N 1.31520 * 120.00070 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00390 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47408 * 89.99806 * 19 17 15 21 21 H 1.48501 * 109.47447 * 210.00334 * 19 17 15 22 22 H 1.48505 * 109.46796 * 330.00178 * 19 17 15 23 23 H 1.09001 * 109.47103 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.46787 * 300.00098 * 1 2 3 25 25 H 1.09004 * 109.47106 * 59.99943 * 1 2 3 26 26 H 1.09003 * 109.46819 * 240.00359 * 2 1 3 27 27 H 1.08996 * 109.47397 * 120.00076 * 2 1 3 28 28 H 1.08000 * 120.75367 * 0.03705 * 4 3 2 29 29 H 1.08007 * 120.34430 * 179.97438 * 5 4 3 30 30 H 1.07995 * 119.58341 * 180.02562 * 6 5 4 31 31 H 0.96998 * 119.99658 * 179.73161 * 9 8 7 32 32 H 1.09001 * 109.46564 * 299.73030 * 12 10 9 33 33 H 1.08998 * 109.47012 * 59.72084 * 12 10 9 34 34 H 1.09000 * 109.46986 * 300.00089 * 13 12 10 35 35 H 1.09002 * 109.46857 * 60.00224 * 13 12 10 36 36 H 1.09000 * 109.47441 * 299.99910 * 14 13 12 37 37 H 1.08994 * 109.47235 * 60.00181 * 14 13 12 38 38 H 0.96994 * 120.00439 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3645 2.0473 -1.1886 5 6 2.8235 3.3563 -1.1414 6 6 2.9339 3.9905 0.0805 7 7 2.6042 3.3698 1.1968 8 6 2.1680 2.1200 1.1935 9 7 1.8364 1.5011 2.3980 10 6 1.9660 2.1732 3.5590 11 8 2.3756 3.3147 3.5565 12 6 1.6082 1.5040 4.8610 13 6 1.8514 2.4756 6.0176 14 6 1.4875 1.7964 7.3393 15 6 1.7265 2.7536 8.4786 16 1 2.1002 3.7472 8.2795 17 6 1.4672 2.3614 9.7746 18 7 1.0117 1.1516 10.0168 19 14 1.7641 3.5476 11.1867 20 1 0.5300 4.3334 11.4409 21 1 2.1246 2.7833 12.4078 22 1 2.8738 4.4692 10.8339 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5138 0.8899 28 1 2.2686 1.5294 -2.1314 29 1 3.0916 3.8737 -2.0508 30 1 3.2901 5.0091 0.1223 31 1 1.5126 0.5868 2.4003 32 1 0.5573 1.2149 4.8441 33 1 2.2268 0.6167 4.9956 34 1 2.9023 2.7646 6.0344 35 1 1.2326 3.3628 5.8830 36 1 0.4366 1.5077 7.3223 37 1 2.1059 0.9090 7.4741 38 1 0.8296 0.8754 10.9286 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593998910.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:03 Heat of formation + Delta-G solvation = -36.761503 kcal Electronic energy + Delta-G solvation = -18836.521304 eV Core-core repulsion = 15870.565145 eV Total energy + Delta-G solvation = -2965.956159 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.92801 -40.14206 -36.44528 -36.11279 -35.19385 -34.04909 -32.22402 -30.55377 -29.43533 -26.19620 -25.34340 -24.36693 -22.33172 -22.19077 -21.18800 -19.24067 -18.47464 -18.02684 -16.93932 -16.70865 -16.51281 -16.37825 -15.68650 -15.42842 -15.14791 -14.66906 -14.57533 -14.26840 -13.98052 -13.74599 -13.58424 -13.14225 -13.02867 -12.64220 -12.53951 -12.42301 -12.24903 -11.90607 -11.73911 -11.56819 -11.48600 -11.30018 -11.06781 -10.58101 -10.54456 -9.96911 -9.15703 -8.20736 -6.30501 0.12232 0.41689 1.39193 1.40268 1.51911 1.68503 1.89175 2.41450 2.94556 3.12229 3.40928 3.78441 3.82071 4.00476 4.14121 4.16310 4.23586 4.27531 4.45727 4.48346 4.61832 4.76035 4.91290 4.94144 4.99324 5.06586 5.08979 5.17371 5.19643 5.30386 5.36203 5.43027 5.53390 5.74601 5.85739 5.87000 6.19456 6.28353 6.84481 7.01439 7.37049 7.38355 8.90792 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.036464 B = 0.003420 C = 0.003164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.695838 B = 8184.547103 C = 8847.318602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.078 4.078 3 C -0.167 4.167 4 C -0.050 4.050 5 C -0.193 4.193 6 C 0.098 3.902 7 N -0.528 5.528 8 C 0.332 3.668 9 N -0.653 5.653 10 C 0.503 3.497 11 O -0.520 6.520 12 C -0.126 4.126 13 C -0.082 4.082 14 C 0.027 3.973 15 C -0.549 4.549 16 H 0.049 0.951 17 C 0.004 3.996 18 N -0.928 5.928 19 Si 0.961 3.039 20 H -0.272 1.272 21 H -0.277 1.277 22 H -0.269 1.269 23 H 0.079 0.921 24 H 0.040 0.960 25 H 0.058 0.942 26 H 0.102 0.898 27 H 0.076 0.924 28 H 0.173 0.827 29 H 0.167 0.833 30 H 0.163 0.837 31 H 0.431 0.569 32 H 0.113 0.887 33 H 0.114 0.886 34 H 0.039 0.961 35 H 0.039 0.961 36 H 0.003 0.997 37 H 0.003 0.997 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.381 -4.668 -26.860 27.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.116 4.116 3 C -0.172 4.172 4 C -0.076 4.076 5 C -0.214 4.214 6 C -0.059 4.059 7 N -0.242 5.242 8 C 0.101 3.899 9 N -0.302 5.302 10 C 0.291 3.709 11 O -0.392 6.392 12 C -0.166 4.166 13 C -0.121 4.121 14 C -0.010 4.010 15 C -0.587 4.587 16 H 0.068 0.932 17 C -0.194 4.194 18 N -0.569 5.569 19 Si 0.786 3.214 20 H -0.197 1.197 21 H -0.202 1.202 22 H -0.194 1.194 23 H 0.098 0.902 24 H 0.060 0.940 25 H 0.077 0.923 26 H 0.120 0.880 27 H 0.094 0.906 28 H 0.190 0.810 29 H 0.184 0.816 30 H 0.180 0.820 31 H 0.271 0.729 32 H 0.132 0.868 33 H 0.132 0.868 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.022 0.978 37 H 0.022 0.978 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.678 -3.541 -25.804 26.055 hybrid contribution -0.074 -0.031 0.432 0.440 sum 0.604 -3.572 -25.372 25.629 Atomic orbital electron populations 1.21792 0.94085 1.02964 1.01822 1.20530 0.96469 0.89916 1.04664 1.20645 1.05529 0.99397 0.91617 1.21747 0.93410 0.94235 0.98191 1.22381 1.03019 0.96453 0.99535 1.22997 0.95107 1.00388 0.87453 1.67576 1.14353 1.09207 1.33109 1.18736 0.95114 0.89689 0.86335 1.43720 1.64879 1.17984 1.03626 1.21497 0.76883 0.86539 0.85996 1.90767 1.42383 1.18997 1.87012 1.21718 1.05124 1.00278 0.89483 1.21166 0.99972 0.97279 0.93642 1.19009 0.95498 0.95075 0.91427 1.21689 1.43876 1.00086 0.93019 0.93221 1.25886 0.94786 0.97056 1.01670 1.70058 1.46075 1.19542 1.21176 0.85507 0.78785 0.78817 0.78318 1.19704 1.20189 1.19397 0.90226 0.94046 0.92262 0.87961 0.90570 0.80955 0.81586 0.81957 0.72855 0.86849 0.86797 0.94182 0.94189 0.97847 0.97820 0.92621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 9.89 71.98 0.71 -0.92 16 2 C -0.08 -0.87 5.51 29.85 0.16 -0.71 16 3 C -0.17 -3.03 5.17 -19.64 -0.10 -3.14 16 4 C -0.05 -0.72 9.83 22.44 0.22 -0.50 16 5 C -0.19 -3.10 10.11 22.37 0.23 -2.87 16 6 C 0.10 2.36 11.18 84.65 0.95 3.31 16 7 N -0.53 -17.30 7.87 -193.05 -1.52 -18.82 16 8 C 0.33 9.06 7.41 132.89 0.98 10.04 16 9 N -0.65 -17.07 5.30 -308.46 -1.64 -18.71 16 10 C 0.50 17.42 7.79 87.66 0.68 18.10 16 11 O -0.52 -23.09 14.23 -3.04 -0.04 -23.13 16 12 C -0.13 -4.18 5.70 29.85 0.17 -4.01 16 13 C -0.08 -3.72 4.44 30.59 0.14 -3.58 16 14 C 0.03 1.45 4.97 29.85 0.15 1.59 16 15 C -0.55 -32.76 9.11 25.60 0.23 -32.53 16 16 H 0.05 2.95 7.74 -2.91 -0.02 2.93 16 17 C 0.00 0.24 5.46 84.65 0.46 0.70 16 18 N -0.93 -56.63 13.29 21.45 0.28 -56.34 16 19 Si 0.96 45.74 29.54 68.60 2.03 47.77 16 20 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 21 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 22 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 23 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 24 H 0.04 0.58 8.14 -2.39 -0.02 0.56 16 25 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 26 H 0.10 0.69 8.06 -2.39 -0.02 0.67 16 27 H 0.08 0.79 6.83 -2.39 -0.02 0.77 16 28 H 0.17 1.10 8.06 -2.91 -0.02 1.08 16 29 H 0.17 1.46 8.06 -2.91 -0.02 1.44 16 30 H 0.16 3.34 8.06 -2.91 -0.02 3.32 16 31 H 0.43 7.71 6.79 -92.71 -0.63 7.08 16 32 H 0.11 3.24 8.14 -2.39 -0.02 3.22 16 33 H 0.11 3.25 8.14 -2.39 -0.02 3.23 16 34 H 0.04 1.90 8.10 -2.39 -0.02 1.88 16 35 H 0.04 1.90 8.10 -2.39 -0.02 1.88 16 36 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 37 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 38 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 Total: -1.00 -79.87 323.23 4.52 -75.35 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: 0.42 Total: 8.38 kcal Atomic # 6 Polarization: -19.49 SS G_CDS: 4.99 Total: -14.50 kcal Atomic # 7 Polarization: -91.01 SS G_CDS: -2.87 Total: -93.88 kcal Atomic # 8 Polarization: -23.09 SS G_CDS: -0.04 Total: -23.13 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Total: -79.87 4.52 -75.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593998910.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.590 kcal (2) G-P(sol) polarization free energy of solvation -79.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds