Wall clock time and date at job start Mon Mar 30 2020 06:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31811 * 119.67279 * 2 1 4 4 C 1.31852 * 121.80060 * 179.67778 * 3 2 1 5 5 C 1.38275 * 120.91581 * 0.63967 * 4 3 2 6 6 C 1.38507 * 119.23391 * 359.39697 * 5 4 3 7 7 C 1.38848 * 119.66442 * 180.02562 * 2 1 3 8 8 N 1.39959 * 120.48737 * 359.97438 * 7 2 1 9 9 C 1.46497 * 119.99597 * 270.02215 * 8 7 2 10 10 C 1.34773 * 119.99843 * 90.02739 * 8 7 2 11 11 O 1.21283 * 119.99924 * 359.97438 * 10 8 7 12 12 C 1.50704 * 119.99750 * 180.02562 * 10 8 7 13 13 C 1.53000 * 109.46733 * 179.97438 * 12 10 8 14 14 C 1.53009 * 109.46825 * 179.97438 * 13 12 10 15 15 C 1.50695 * 109.46950 * 180.02562 * 14 13 12 16 16 H 1.08001 * 120.00169 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99564 * 180.02562 * 15 14 13 18 18 N 1.31509 * 120.00171 * 359.97438 * 17 15 14 19 19 Si 1.86808 * 119.99687 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46876 * 89.99761 * 19 17 15 21 21 H 1.48497 * 109.46796 * 209.99808 * 19 17 15 22 22 H 1.48495 * 109.47272 * 329.99849 * 19 17 15 23 23 H 1.08996 * 109.47049 * 269.98263 * 1 2 3 24 24 H 1.09006 * 109.46698 * 29.97692 * 1 2 3 25 25 H 1.08995 * 109.47633 * 149.97982 * 1 2 3 26 26 H 1.08001 * 119.55037 * 180.33380 * 4 3 2 27 27 H 1.08002 * 120.38668 * 179.67987 * 5 4 3 28 28 H 1.08003 * 120.82246 * 180.30059 * 6 5 4 29 29 H 1.09005 * 109.47311 * 90.00642 * 9 8 7 30 30 H 1.09000 * 109.46929 * 209.99695 * 9 8 7 31 31 H 1.08998 * 109.47976 * 329.99917 * 9 8 7 32 32 H 1.09001 * 109.46728 * 299.99347 * 12 10 8 33 33 H 1.08999 * 109.47404 * 59.99383 * 12 10 8 34 34 H 1.09001 * 109.47242 * 299.99352 * 13 12 10 35 35 H 1.08996 * 109.47107 * 60.00410 * 13 12 10 36 36 H 1.09006 * 109.46794 * 300.00297 * 14 13 12 37 37 H 1.09001 * 109.46661 * 59.99945 * 14 13 12 38 38 H 0.97006 * 120.00128 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1596 1.1453 0.0000 4 6 3.4772 1.1942 0.0063 5 6 4.2312 0.0352 0.0000 6 6 3.5869 -1.1909 -0.0005 7 6 2.1942 -1.2065 -0.0005 8 7 1.4976 -2.4204 -0.0005 9 6 1.1332 -3.0557 1.2682 10 6 1.1623 -3.0049 -1.1677 11 8 1.4638 -2.4787 -2.2180 12 6 0.4117 -4.3117 -1.1677 13 6 0.1575 -4.7538 -2.6102 14 6 -0.6039 -6.0809 -2.6102 15 6 -0.8538 -6.5166 -4.0310 16 1 -0.5048 -5.9077 -4.8519 17 6 -1.5289 -7.6922 -4.2829 18 7 -1.9542 -8.4333 -3.2833 19 14 -1.8392 -8.2320 -6.0442 20 1 -0.7073 -9.0722 -6.5111 21 1 -3.0977 -9.0178 -6.1065 22 1 -1.9594 -7.0351 -6.9149 23 1 -0.3633 -0.0003 1.0276 24 1 -0.3633 0.8903 -0.5135 25 1 -0.3634 -0.8897 -0.5141 26 1 3.9745 2.1529 0.0115 27 1 5.3100 0.0853 0.0000 28 1 4.1506 -2.1122 -0.0005 29 1 0.1514 -2.7019 1.5829 30 1 1.1048 -4.1375 1.1379 31 1 1.8720 -2.8006 2.0279 32 1 1.0025 -5.0700 -0.6537 33 1 -0.5410 -4.1836 -0.6540 34 1 -0.4334 -3.9954 -3.1239 35 1 1.1101 -4.8819 -3.1242 36 1 -0.0126 -6.8391 -2.0966 37 1 -1.5565 -5.9531 -2.0961 38 1 -2.4289 -9.2606 -3.4606 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594035187.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:08 Heat of formation + Delta-G solvation = -10.872464 kcal Electronic energy + Delta-G solvation = -19151.216283 eV Core-core repulsion = 16186.382758 eV Total energy + Delta-G solvation = -2964.833526 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.98912 -39.22943 -35.81493 -34.26985 -33.20357 -32.25406 -31.30548 -28.26856 -27.65388 -26.66246 -24.46905 -23.01480 -22.28085 -20.46370 -19.24710 -17.32050 -17.00892 -16.73167 -16.36449 -16.01457 -15.32854 -14.50270 -14.36268 -14.19831 -13.80210 -13.45332 -13.28217 -12.90871 -12.72075 -12.55907 -12.37057 -12.26086 -12.10636 -11.82470 -11.39695 -10.81997 -10.62572 -10.54449 -10.06861 -9.96153 -9.73278 -9.69666 -9.32750 -9.08837 -8.94788 -8.82699 -8.33092 -5.98818 -4.00188 0.83580 1.06318 2.74567 2.85404 3.34372 3.40246 3.45251 3.52858 4.14785 4.48404 4.56645 4.66308 4.83164 4.90413 4.96683 5.15538 5.23145 5.33514 5.37455 5.46403 5.47901 5.50767 5.62470 5.65893 5.89561 5.92246 5.99025 6.16349 6.23293 6.68506 6.73349 6.89649 7.12409 7.24374 7.68968 7.78151 7.81288 8.01563 8.29529 8.45605 9.06772 9.63930 11.12644 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.038599 B = 0.003563 C = 0.003504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.227144 B = 7857.604703 C = 7989.779098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.139 3.861 3 N -0.480 5.480 4 C 0.102 3.898 5 C -0.174 4.174 6 C -0.066 4.066 7 C 0.096 3.904 8 N -0.585 5.585 9 C 0.081 3.919 10 C 0.516 3.484 11 O -0.522 6.522 12 C -0.134 4.134 13 C -0.096 4.096 14 C 0.021 3.979 15 C -0.518 4.518 16 H 0.056 0.944 17 C 0.056 3.944 18 N -0.898 5.898 19 Si 0.892 3.108 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.273 1.273 23 H 0.078 0.922 24 H 0.078 0.922 25 H 0.075 0.925 26 H 0.158 0.842 27 H 0.137 0.863 28 H 0.135 0.865 29 H 0.061 0.939 30 H 0.085 0.915 31 H 0.068 0.932 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.055 0.945 35 H 0.054 0.946 36 H 0.016 0.984 37 H 0.016 0.984 38 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.470 15.080 13.281 22.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.000 4.000 3 N -0.190 5.190 4 C -0.056 4.056 5 C -0.194 4.194 6 C -0.093 4.093 7 C 0.003 3.997 8 N -0.319 5.319 9 C -0.061 4.061 10 C 0.306 3.694 11 O -0.396 6.396 12 C -0.173 4.173 13 C -0.134 4.134 14 C -0.016 4.016 15 C -0.557 4.557 16 H 0.074 0.926 17 C -0.145 4.145 18 N -0.537 5.537 19 Si 0.720 3.280 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.198 1.198 23 H 0.097 0.903 24 H 0.097 0.903 25 H 0.094 0.906 26 H 0.175 0.825 27 H 0.155 0.845 28 H 0.153 0.847 29 H 0.080 0.920 30 H 0.103 0.897 31 H 0.087 0.913 32 H 0.109 0.891 33 H 0.110 0.890 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.034 0.966 37 H 0.035 0.965 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 9.032 15.942 12.723 22.307 hybrid contribution 0.452 -1.225 -0.797 1.530 sum 9.484 14.717 11.926 21.184 Atomic orbital electron populations 1.20670 0.88566 1.03876 1.02845 1.21599 0.97370 0.87483 0.93575 1.67548 1.10114 1.28434 1.12902 1.22770 0.89407 0.98566 0.94809 1.22057 1.01553 0.92785 1.03000 1.21846 0.93587 0.98995 0.94861 1.18361 0.91054 0.86748 1.03487 1.45537 1.57943 1.20766 1.07636 1.21898 1.00842 0.99061 0.84326 1.21516 0.78633 0.87097 0.82119 1.90708 1.53242 1.64840 1.30785 1.21894 1.00079 0.92312 1.03061 1.21486 1.01124 0.99870 0.90962 1.19124 0.94917 0.90320 0.97205 1.21266 1.35677 1.06108 0.92617 0.92586 1.25013 0.95756 0.96644 0.97052 1.69957 1.39019 1.14136 1.30614 0.86595 0.77591 0.78698 0.85159 1.20676 1.21245 1.19821 0.90345 0.90280 0.90630 0.82503 0.84486 0.84679 0.92050 0.89689 0.91278 0.89097 0.89038 0.92627 0.92700 0.96599 0.96539 0.93056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.19 9.93 36.01 0.36 -0.83 16 2 C 0.14 1.84 6.80 -82.37 -0.56 1.28 16 3 N -0.48 -6.23 10.27 -9.32 -0.10 -6.32 16 4 C 0.10 1.05 11.18 -17.53 -0.20 0.85 16 5 C -0.17 -1.66 10.10 -39.47 -0.40 -2.06 16 6 C -0.07 -0.75 10.11 -39.10 -0.40 -1.15 16 7 C 0.10 1.26 4.46 -83.53 -0.37 0.88 16 8 N -0.59 -7.46 2.06 -120.70 -0.25 -7.71 16 9 C 0.08 0.70 10.23 59.85 0.61 1.32 16 10 C 0.52 8.42 6.98 -10.99 -0.08 8.34 16 11 O -0.52 -10.74 15.95 5.55 0.09 -10.65 16 12 C -0.13 -2.16 4.25 -27.88 -0.12 -2.28 16 13 C -0.10 -2.06 4.44 -26.73 -0.12 -2.18 16 14 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 15 C -0.52 -14.94 9.11 -34.44 -0.31 -15.25 16 16 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 18 N -0.90 -26.90 13.29 55.43 0.74 -26.16 16 19 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 23 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 24 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 25 H 0.07 0.97 6.90 -51.93 -0.36 0.61 16 26 H 0.16 1.10 8.06 -52.49 -0.42 0.68 16 27 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 28 H 0.14 1.37 8.06 -52.48 -0.42 0.95 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.08 0.68 6.44 -51.93 -0.33 0.34 16 31 H 0.07 0.49 8.05 -51.93 -0.42 0.08 16 32 H 0.09 1.31 7.40 -51.93 -0.38 0.92 16 33 H 0.09 1.32 8.11 -51.93 -0.42 0.90 16 34 H 0.05 1.24 8.10 -51.93 -0.42 0.82 16 35 H 0.05 1.23 8.10 -51.93 -0.42 0.80 16 36 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 324.51 15.07 4.89 4.89 Total: -1.00 -34.61 324.51 -7.15 -41.76 By element: Atomic # 1 Polarization: 2.07 SS G_CDS: -5.68 Total: -3.61 kcal Atomic # 6 Polarization: -7.33 SS G_CDS: -1.82 Total: -9.14 kcal Atomic # 7 Polarization: -40.59 SS G_CDS: 0.39 Total: -40.19 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.09 Total: -10.65 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -34.61 -7.15 -41.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594035187.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.885 kcal (2) G-P(sol) polarization free energy of solvation -34.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds