Wall clock time and date at job start Mon Mar 30 2020 06:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31811 * 119.67279 * 2 1 4 4 C 1.31852 * 121.80060 * 179.67778 * 3 2 1 5 5 C 1.38275 * 120.91581 * 0.63967 * 4 3 2 6 6 C 1.38507 * 119.23391 * 359.39697 * 5 4 3 7 7 C 1.38848 * 119.66442 * 180.02562 * 2 1 3 8 8 N 1.39959 * 120.48737 * 359.97438 * 7 2 1 9 9 C 1.46497 * 119.99597 * 270.02215 * 8 7 2 10 10 C 1.34773 * 119.99843 * 90.02739 * 8 7 2 11 11 O 1.21283 * 119.99924 * 359.97438 * 10 8 7 12 12 C 1.50704 * 119.99750 * 180.02562 * 10 8 7 13 13 C 1.53000 * 109.46733 * 179.97438 * 12 10 8 14 14 C 1.53009 * 109.46825 * 179.97438 * 13 12 10 15 15 C 1.50695 * 109.46950 * 180.02562 * 14 13 12 16 16 H 1.08001 * 120.00169 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99564 * 180.02562 * 15 14 13 18 18 N 1.31509 * 120.00171 * 359.97438 * 17 15 14 19 19 Si 1.86808 * 119.99687 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46876 * 89.99761 * 19 17 15 21 21 H 1.48497 * 109.46796 * 209.99808 * 19 17 15 22 22 H 1.48495 * 109.47272 * 329.99849 * 19 17 15 23 23 H 1.08996 * 109.47049 * 269.98263 * 1 2 3 24 24 H 1.09006 * 109.46698 * 29.97692 * 1 2 3 25 25 H 1.08995 * 109.47633 * 149.97982 * 1 2 3 26 26 H 1.08001 * 119.55037 * 180.33380 * 4 3 2 27 27 H 1.08002 * 120.38668 * 179.67987 * 5 4 3 28 28 H 1.08003 * 120.82246 * 180.30059 * 6 5 4 29 29 H 1.09005 * 109.47311 * 90.00642 * 9 8 7 30 30 H 1.09000 * 109.46929 * 209.99695 * 9 8 7 31 31 H 1.08998 * 109.47976 * 329.99917 * 9 8 7 32 32 H 1.09001 * 109.46728 * 299.99347 * 12 10 8 33 33 H 1.08999 * 109.47404 * 59.99383 * 12 10 8 34 34 H 1.09001 * 109.47242 * 299.99352 * 13 12 10 35 35 H 1.08996 * 109.47107 * 60.00410 * 13 12 10 36 36 H 1.09006 * 109.46794 * 300.00297 * 14 13 12 37 37 H 1.09001 * 109.46661 * 59.99945 * 14 13 12 38 38 H 0.97006 * 120.00128 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1596 1.1453 0.0000 4 6 3.4772 1.1942 0.0063 5 6 4.2312 0.0352 0.0000 6 6 3.5869 -1.1909 -0.0005 7 6 2.1942 -1.2065 -0.0005 8 7 1.4976 -2.4204 -0.0005 9 6 1.1332 -3.0557 1.2682 10 6 1.1623 -3.0049 -1.1677 11 8 1.4638 -2.4787 -2.2180 12 6 0.4117 -4.3117 -1.1677 13 6 0.1575 -4.7538 -2.6102 14 6 -0.6039 -6.0809 -2.6102 15 6 -0.8538 -6.5166 -4.0310 16 1 -0.5048 -5.9077 -4.8519 17 6 -1.5289 -7.6922 -4.2829 18 7 -1.9542 -8.4333 -3.2833 19 14 -1.8392 -8.2320 -6.0442 20 1 -0.7073 -9.0722 -6.5111 21 1 -3.0977 -9.0178 -6.1065 22 1 -1.9594 -7.0351 -6.9149 23 1 -0.3633 -0.0003 1.0276 24 1 -0.3633 0.8903 -0.5135 25 1 -0.3634 -0.8897 -0.5141 26 1 3.9745 2.1529 0.0115 27 1 5.3100 0.0853 0.0000 28 1 4.1506 -2.1122 -0.0005 29 1 0.1514 -2.7019 1.5829 30 1 1.1048 -4.1375 1.1379 31 1 1.8720 -2.8006 2.0279 32 1 1.0025 -5.0700 -0.6537 33 1 -0.5410 -4.1836 -0.6540 34 1 -0.4334 -3.9954 -3.1239 35 1 1.1101 -4.8819 -3.1242 36 1 -0.0126 -6.8391 -2.0966 37 1 -1.5565 -5.9531 -2.0961 38 1 -2.4289 -9.2606 -3.4606 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594035187.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:08 Heat of formation + Delta-G solvation = -31.969356 kcal Electronic energy + Delta-G solvation = -19152.131113 eV Core-core repulsion = 16186.382758 eV Total energy + Delta-G solvation = -2965.748356 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.96895 -40.33877 -36.92885 -36.14152 -34.10981 -34.04341 -32.39982 -29.81028 -28.71274 -27.56926 -26.11032 -24.28198 -23.21285 -22.12965 -20.49029 -18.53117 -18.35064 -17.96874 -17.60530 -17.14638 -16.61087 -16.46993 -15.39207 -15.19616 -15.09218 -14.61253 -14.21171 -14.14699 -14.01069 -13.79282 -13.44032 -13.38766 -13.27659 -13.14273 -12.93034 -12.62893 -12.50358 -12.38872 -11.56703 -11.47851 -11.26525 -11.07756 -10.83076 -10.71285 -10.53889 -9.85862 -9.80703 -8.20207 -6.29763 -0.02137 0.20867 1.39764 1.40469 1.49665 1.52076 1.84691 2.41686 2.68532 3.12932 3.33405 3.64686 3.73875 3.92631 4.10663 4.13340 4.17151 4.22964 4.44080 4.53965 4.56202 4.61066 4.63223 4.72597 4.90620 4.95129 5.05323 5.08055 5.09727 5.12891 5.18693 5.39267 5.53757 5.75537 5.82521 5.86493 6.15268 6.29056 6.85322 6.91764 7.10360 7.38791 8.91159 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.038599 B = 0.003563 C = 0.003504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.227144 B = 7857.604703 C = 7989.779098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.117 3.883 3 N -0.503 5.503 4 C 0.097 3.903 5 C -0.164 4.164 6 C -0.077 4.077 7 C 0.071 3.929 8 N -0.571 5.571 9 C 0.071 3.929 10 C 0.518 3.482 11 O -0.575 6.575 12 C -0.123 4.123 13 C -0.083 4.083 14 C 0.028 3.972 15 C -0.548 4.548 16 H 0.049 0.951 17 C 0.005 3.995 18 N -0.928 5.928 19 Si 0.959 3.041 20 H -0.272 1.272 21 H -0.277 1.277 22 H -0.270 1.270 23 H 0.099 0.901 24 H 0.075 0.925 25 H 0.059 0.941 26 H 0.190 0.810 27 H 0.173 0.827 28 H 0.145 0.855 29 H 0.076 0.924 30 H 0.095 0.905 31 H 0.088 0.912 32 H 0.114 0.886 33 H 0.113 0.887 34 H 0.038 0.962 35 H 0.039 0.961 36 H 0.003 0.997 37 H 0.003 0.997 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.441 15.522 14.119 23.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.021 4.021 3 N -0.214 5.214 4 C -0.060 4.060 5 C -0.184 4.184 6 C -0.104 4.104 7 C -0.022 4.022 8 N -0.303 5.303 9 C -0.069 4.069 10 C 0.310 3.690 11 O -0.453 6.453 12 C -0.163 4.163 13 C -0.121 4.121 14 C -0.009 4.009 15 C -0.586 4.586 16 H 0.067 0.933 17 C -0.193 4.193 18 N -0.568 5.568 19 Si 0.784 3.216 20 H -0.197 1.197 21 H -0.203 1.203 22 H -0.194 1.194 23 H 0.117 0.883 24 H 0.094 0.906 25 H 0.078 0.922 26 H 0.207 0.793 27 H 0.190 0.810 28 H 0.163 0.837 29 H 0.095 0.905 30 H 0.113 0.887 31 H 0.107 0.893 32 H 0.132 0.868 33 H 0.131 0.869 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.022 0.978 37 H 0.022 0.978 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 10.004 16.388 13.620 23.540 hybrid contribution 0.210 -1.306 -0.987 1.651 sum 10.214 15.082 12.633 22.167 Atomic orbital electron populations 1.20645 0.88224 1.02847 1.03878 1.21778 0.97996 0.87841 0.94468 1.67570 1.11595 1.28408 1.13784 1.23404 0.88758 1.00398 0.93453 1.22440 1.03287 0.91680 1.00979 1.22104 0.93094 1.00382 0.94837 1.18568 0.91967 0.86597 1.05023 1.45419 1.56612 1.20451 1.07773 1.22218 1.02311 0.99467 0.82918 1.21369 0.78303 0.86888 0.82474 1.90684 1.55632 1.66159 1.32849 1.21718 1.01758 0.93130 0.99683 1.21186 0.99234 0.97274 0.94436 1.19001 0.94497 0.91967 0.95451 1.21684 1.36262 1.06687 0.94011 0.93267 1.25866 0.95299 0.96592 1.01547 1.70053 1.39395 1.14560 1.32755 0.85534 0.77909 0.78363 0.79784 1.19717 1.20255 1.19430 0.88261 0.90618 0.92237 0.79290 0.80973 0.83688 0.90540 0.88691 0.89307 0.86799 0.86937 0.94300 0.94235 0.97817 0.97834 0.92636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.28 9.93 71.24 0.71 -1.57 16 2 C 0.12 3.06 6.80 42.71 0.29 3.35 16 3 N -0.50 -12.53 10.27 -183.39 -1.88 -14.41 16 4 C 0.10 1.78 11.18 84.70 0.95 2.73 16 5 C -0.16 -2.72 10.10 22.34 0.23 -2.49 16 6 C -0.08 -1.65 10.11 22.58 0.23 -1.42 16 7 C 0.07 1.79 4.46 38.24 0.17 1.96 16 8 N -0.57 -13.97 2.06 -654.17 -1.35 -15.32 16 9 C 0.07 1.08 10.23 127.77 1.31 2.39 16 10 C 0.52 16.85 6.98 87.66 0.61 17.46 16 11 O -0.58 -24.24 15.95 -3.04 -0.05 -24.29 16 12 C -0.12 -3.91 4.25 29.85 0.13 -3.79 16 13 C -0.08 -3.64 4.44 30.60 0.14 -3.50 16 14 C 0.03 1.46 4.97 29.85 0.15 1.61 16 15 C -0.55 -32.18 9.11 25.60 0.23 -31.94 16 16 H 0.05 2.87 7.74 -2.91 -0.02 2.85 16 17 C 0.01 0.30 5.46 84.66 0.46 0.76 16 18 N -0.93 -55.80 13.29 21.45 0.28 -55.52 16 19 Si 0.96 45.10 29.54 68.60 2.03 47.13 16 20 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 21 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 22 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 23 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 24 H 0.07 1.74 8.14 -2.38 -0.02 1.73 16 25 H 0.06 1.54 6.90 -2.39 -0.02 1.52 16 26 H 0.19 2.06 8.06 -2.91 -0.02 2.03 16 27 H 0.17 1.56 8.06 -2.91 -0.02 1.54 16 28 H 0.15 2.69 8.06 -2.91 -0.02 2.67 16 29 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 30 H 0.09 1.27 6.44 -2.39 -0.02 1.26 16 31 H 0.09 1.03 8.05 -2.39 -0.02 1.02 16 32 H 0.11 3.09 7.40 -2.39 -0.02 3.07 16 33 H 0.11 3.10 8.11 -2.39 -0.02 3.08 16 34 H 0.04 1.79 8.10 -2.39 -0.02 1.77 16 35 H 0.04 1.81 8.10 -2.39 -0.02 1.80 16 36 H 0.00 0.19 8.14 -2.38 -0.02 0.17 16 37 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 38 H 0.26 14.91 8.31 -92.70 -0.77 14.14 16 Total: -1.00 -76.20 324.51 5.66 -70.54 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: 1.03 Total: 6.33 kcal Atomic # 6 Polarization: -20.06 SS G_CDS: 5.60 Total: -14.46 kcal Atomic # 7 Polarization: -82.30 SS G_CDS: -2.95 Total: -85.25 kcal Atomic # 8 Polarization: -24.24 SS G_CDS: -0.05 Total: -24.29 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -76.20 5.66 -70.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594035187.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.575 kcal (2) G-P(sol) polarization free energy of solvation -76.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds