Wall clock time and date at job start Mon Mar 30 2020 07:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46502 * 120.00256 * 2 1 4 4 C 1.50703 * 109.46792 * 89.99932 * 3 2 1 5 5 C 1.38654 * 120.78409 * 90.00088 * 4 3 2 6 6 C 1.38209 * 119.15786 * 180.02562 * 5 4 3 7 7 N 1.31870 * 120.76375 * 0.26353 * 6 5 4 8 8 C 1.31872 * 121.72489 * 359.46946 * 7 6 5 9 9 C 1.38200 * 120.76402 * 0.52682 * 8 7 6 10 10 C 1.34775 * 119.99977 * 180.02562 * 2 1 3 11 11 O 1.21277 * 120.00131 * 179.97438 * 10 2 1 12 12 C 1.50704 * 119.99879 * 359.97438 * 10 2 1 13 13 C 1.52999 * 109.46927 * 180.02562 * 12 10 2 14 14 C 1.53005 * 109.47067 * 180.02562 * 13 12 10 15 15 C 1.50700 * 109.47231 * 180.02562 * 14 13 12 16 16 H 1.07996 * 119.99797 * 0.02562 * 15 14 13 17 17 C 1.37871 * 119.99753 * 179.97438 * 15 14 13 18 18 N 1.31518 * 120.00205 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99846 * 179.97438 * 17 15 14 20 20 H 1.48508 * 109.47118 * 89.99964 * 19 17 15 21 21 H 1.48499 * 109.47309 * 209.99576 * 19 17 15 22 22 H 1.48500 * 109.47245 * 330.00172 * 19 17 15 23 23 H 1.09000 * 109.47120 * 89.99550 * 1 2 3 24 24 H 1.08996 * 109.47042 * 210.00001 * 1 2 3 25 25 H 1.08999 * 109.46892 * 329.99974 * 1 2 3 26 26 H 1.08996 * 109.46984 * 330.00686 * 3 2 1 27 27 H 1.08997 * 109.47513 * 210.00366 * 3 2 1 28 28 H 1.07995 * 120.42251 * 0.04566 * 5 4 3 29 29 H 1.08002 * 119.61346 * 179.97438 * 6 5 4 30 30 H 1.08004 * 119.61160 * 180.27376 * 8 7 6 31 31 H 1.08004 * 120.41549 * 179.76941 * 9 8 7 32 32 H 1.08993 * 109.47461 * 300.00602 * 12 10 2 33 33 H 1.09007 * 109.46815 * 60.00710 * 12 10 2 34 34 H 1.09001 * 109.47336 * 300.00055 * 13 12 10 35 35 H 1.08994 * 109.47349 * 60.00357 * 13 12 10 36 36 H 1.09001 * 109.46726 * 299.99985 * 14 13 12 37 37 H 1.09003 * 109.47047 * 59.99495 * 14 13 12 38 38 H 0.97001 * 119.99662 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7037 1.4209 5 6 3.5986 1.3129 2.0899 6 6 3.7946 1.7308 3.3927 7 7 2.9014 2.4874 4.0000 8 6 1.7992 2.8821 3.3929 9 6 1.5353 2.5035 2.0903 10 6 2.1389 -1.1672 -0.0005 11 8 3.3517 -1.1672 -0.0010 12 6 1.3853 -2.4723 -0.0005 13 6 2.3796 -3.6352 -0.0005 14 6 1.6145 -4.9603 -0.0012 15 6 2.5938 -6.1057 -0.0005 16 1 3.6556 -5.9084 0.0007 17 6 2.1342 -7.4056 -0.0004 18 7 0.8411 -7.6459 -0.0004 19 14 3.3480 -8.8255 -0.0004 20 1 3.6697 -9.2016 1.3998 21 1 2.7480 -9.9897 -0.7002 22 1 4.5913 -8.4139 -0.7004 23 1 -0.3633 0.0001 -1.0277 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5138 26 1 1.6085 2.0284 -0.5137 27 1 3.1499 1.1384 -0.5139 28 1 4.3318 0.6901 1.5993 29 1 4.6874 1.4304 3.9209 30 1 1.0928 3.5051 3.9214 31 1 0.6290 2.8270 1.5998 32 1 0.7590 -2.5302 0.8896 33 1 0.7584 -2.5298 -0.8904 34 1 3.0063 -3.5775 -0.8905 35 1 3.0062 -3.5775 0.8894 36 1 0.9876 -5.0182 0.8886 37 1 0.9881 -5.0177 -0.8914 38 1 0.5178 -8.5604 -0.0007 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594220244.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:07 Heat of formation + Delta-G solvation = -15.552069 kcal Electronic energy + Delta-G solvation = -18926.538094 eV Core-core repulsion = 15961.501646 eV Total energy + Delta-G solvation = -2965.036449 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.53462 -39.48359 -35.90641 -34.26651 -33.14059 -31.93928 -31.36112 -28.61328 -27.48521 -26.02390 -23.74552 -23.58386 -22.19550 -20.30386 -18.98106 -17.09452 -16.96278 -16.35140 -16.24566 -15.84540 -15.79838 -15.37741 -14.41975 -14.10171 -13.89675 -13.84219 -13.32264 -12.86909 -12.79802 -12.60900 -12.47224 -12.18576 -11.81122 -11.51277 -11.36147 -10.80940 -10.59176 -10.53616 -10.06095 -9.74190 -9.68114 -9.61231 -9.30820 -9.25890 -9.01795 -8.76669 -8.32323 -5.98031 -3.99460 0.96141 1.01687 2.81767 3.01916 3.34687 3.40510 3.45261 3.72009 4.29549 4.43429 4.45772 4.49387 4.82295 4.89139 4.95184 5.02786 5.17595 5.27405 5.38116 5.40772 5.52248 5.54221 5.64264 5.68495 5.70710 5.80841 6.14666 6.22974 6.37545 6.54127 6.70962 6.91443 7.14472 7.34179 7.70110 7.79940 7.82764 8.02491 8.32528 8.46482 9.07569 9.64588 11.13483 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.029523 B = 0.003585 C = 0.003413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.184027 B = 7807.984525 C = 8201.725555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.622 5.622 3 C 0.152 3.848 4 C -0.061 4.061 5 C -0.147 4.147 6 C 0.096 3.904 7 N -0.486 5.486 8 C 0.092 3.908 9 C -0.163 4.163 10 C 0.515 3.485 11 O -0.533 6.533 12 C -0.136 4.136 13 C -0.095 4.095 14 C 0.021 3.979 15 C -0.518 4.518 16 H 0.056 0.944 17 C 0.056 3.944 18 N -0.898 5.898 19 Si 0.892 3.108 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.273 1.273 23 H 0.058 0.942 24 H 0.078 0.922 25 H 0.067 0.933 26 H 0.087 0.913 27 H 0.096 0.904 28 H 0.142 0.858 29 H 0.156 0.844 30 H 0.154 0.846 31 H 0.132 0.868 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.015 0.985 37 H 0.016 0.984 38 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.281 22.173 1.648 22.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.357 5.357 3 C 0.029 3.971 4 C -0.070 4.070 5 C -0.167 4.167 6 C -0.061 4.061 7 N -0.196 5.196 8 C -0.065 4.065 9 C -0.184 4.184 10 C 0.305 3.695 11 O -0.408 6.408 12 C -0.176 4.176 13 C -0.133 4.133 14 C -0.016 4.016 15 C -0.556 4.556 16 H 0.074 0.926 17 C -0.145 4.145 18 N -0.537 5.537 19 Si 0.720 3.280 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.198 1.198 23 H 0.077 0.923 24 H 0.097 0.903 25 H 0.085 0.915 26 H 0.105 0.895 27 H 0.114 0.886 28 H 0.160 0.840 29 H 0.173 0.827 30 H 0.171 0.829 31 H 0.150 0.850 32 H 0.106 0.894 33 H 0.107 0.893 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.033 0.967 37 H 0.034 0.966 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.608 22.263 2.484 22.459 hybrid contribution 0.204 -1.068 -0.805 1.353 sum -1.404 21.195 1.679 21.308 Atomic orbital electron populations 1.21827 0.79232 1.03420 1.02020 1.48012 1.07031 1.05304 1.75373 1.20305 0.99171 0.85894 0.91682 1.20742 0.93932 0.94991 0.97366 1.22284 0.98482 0.99814 0.96140 1.22814 0.97707 0.93393 0.92171 1.67665 1.02755 1.11105 1.38046 1.22722 0.94375 0.97320 0.92118 1.22030 1.00086 0.99778 0.96469 1.21346 0.88334 0.85461 0.74357 1.90646 1.14222 1.87269 1.48676 1.21878 1.00378 0.91782 1.03554 1.21458 0.96748 0.93442 1.01647 1.19128 0.95422 0.89996 0.97085 1.21266 0.93240 0.90953 1.50166 0.92583 1.25018 0.95128 0.98981 0.95371 1.69963 1.12513 1.20068 1.51201 0.86593 0.81392 0.81923 0.78117 1.20669 1.21255 1.19822 0.92292 0.90318 0.91452 0.89503 0.88600 0.84025 0.82686 0.82912 0.85031 0.89440 0.89323 0.92683 0.92761 0.96669 0.96609 0.93067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.65 10.24 59.85 0.61 1.27 16 2 N -0.62 -7.29 2.86 -182.95 -0.52 -7.81 16 3 C 0.15 1.54 5.58 -5.19 -0.03 1.51 16 4 C -0.06 -0.65 5.50 -104.32 -0.57 -1.22 16 5 C -0.15 -1.76 9.82 -39.44 -0.39 -2.15 16 6 C 0.10 1.11 11.18 -17.55 -0.20 0.92 16 7 N -0.49 -5.92 10.36 -13.25 -0.14 -6.06 16 8 C 0.09 0.91 11.18 -17.55 -0.20 0.71 16 9 C -0.16 -1.47 9.82 -39.45 -0.39 -1.86 16 10 C 0.51 8.13 7.67 -10.98 -0.08 8.05 16 11 O -0.53 -10.09 15.23 5.56 0.08 -10.01 16 12 C -0.14 -2.25 4.25 -27.88 -0.12 -2.37 16 13 C -0.09 -2.04 4.44 -26.73 -0.12 -2.16 16 14 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 15 C -0.52 -15.01 9.11 -34.44 -0.31 -15.32 16 16 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.90 -27.09 13.29 55.43 0.74 -26.35 16 19 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 20 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 22 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 23 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.08 0.69 6.44 -51.93 -0.33 0.35 16 25 H 0.07 0.42 8.07 -51.93 -0.42 0.00 16 26 H 0.09 0.62 8.03 -51.93 -0.42 0.20 16 27 H 0.10 1.09 7.38 -51.93 -0.38 0.70 16 28 H 0.14 1.80 7.72 -52.49 -0.41 1.40 16 29 H 0.16 1.48 8.06 -52.49 -0.42 1.05 16 30 H 0.15 1.07 8.06 -52.48 -0.42 0.65 16 31 H 0.13 0.81 8.06 -52.48 -0.42 0.38 16 32 H 0.09 1.34 7.40 -51.93 -0.38 0.96 16 33 H 0.09 1.33 8.11 -51.92 -0.42 0.91 16 34 H 0.05 1.23 8.10 -51.93 -0.42 0.81 16 35 H 0.05 1.22 8.10 -51.93 -0.42 0.80 16 36 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 325.83 15.07 4.91 4.91 Total: -1.00 -34.17 325.83 -7.66 -41.83 By element: Atomic # 1 Polarization: 2.88 SS G_CDS: -5.68 Total: -2.81 kcal Atomic # 6 Polarization: -8.68 SS G_CDS: -2.03 Total: -10.71 kcal Atomic # 7 Polarization: -40.30 SS G_CDS: 0.08 Total: -40.23 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: 0.08 Total: -10.01 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -34.17 -7.66 -41.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594220244.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.277 kcal (2) G-P(sol) polarization free energy of solvation -34.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds