Wall clock time and date at job start Mon Mar 30 2020 07:03:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46502 * 120.00256 * 2 1 4 4 C 1.50703 * 109.46792 * 89.99932 * 3 2 1 5 5 C 1.38654 * 120.78409 * 90.00088 * 4 3 2 6 6 C 1.38209 * 119.15786 * 180.02562 * 5 4 3 7 7 N 1.31870 * 120.76375 * 0.26353 * 6 5 4 8 8 C 1.31872 * 121.72489 * 359.46946 * 7 6 5 9 9 C 1.38200 * 120.76402 * 0.52682 * 8 7 6 10 10 C 1.34775 * 119.99977 * 180.02562 * 2 1 3 11 11 O 1.21277 * 120.00131 * 179.97438 * 10 2 1 12 12 C 1.50704 * 119.99879 * 359.97438 * 10 2 1 13 13 C 1.52999 * 109.46927 * 180.02562 * 12 10 2 14 14 C 1.53005 * 109.47067 * 180.02562 * 13 12 10 15 15 C 1.50700 * 109.47231 * 180.02562 * 14 13 12 16 16 H 1.07996 * 119.99797 * 0.02562 * 15 14 13 17 17 C 1.37871 * 119.99753 * 179.97438 * 15 14 13 18 18 N 1.31518 * 120.00205 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99846 * 179.97438 * 17 15 14 20 20 H 1.48508 * 109.47118 * 89.99964 * 19 17 15 21 21 H 1.48499 * 109.47309 * 209.99576 * 19 17 15 22 22 H 1.48500 * 109.47245 * 330.00172 * 19 17 15 23 23 H 1.09000 * 109.47120 * 89.99550 * 1 2 3 24 24 H 1.08996 * 109.47042 * 210.00001 * 1 2 3 25 25 H 1.08999 * 109.46892 * 329.99974 * 1 2 3 26 26 H 1.08996 * 109.46984 * 330.00686 * 3 2 1 27 27 H 1.08997 * 109.47513 * 210.00366 * 3 2 1 28 28 H 1.07995 * 120.42251 * 0.04566 * 5 4 3 29 29 H 1.08002 * 119.61346 * 179.97438 * 6 5 4 30 30 H 1.08004 * 119.61160 * 180.27376 * 8 7 6 31 31 H 1.08004 * 120.41549 * 179.76941 * 9 8 7 32 32 H 1.08993 * 109.47461 * 300.00602 * 12 10 2 33 33 H 1.09007 * 109.46815 * 60.00710 * 12 10 2 34 34 H 1.09001 * 109.47336 * 300.00055 * 13 12 10 35 35 H 1.08994 * 109.47349 * 60.00357 * 13 12 10 36 36 H 1.09001 * 109.46726 * 299.99985 * 14 13 12 37 37 H 1.09003 * 109.47047 * 59.99495 * 14 13 12 38 38 H 0.97001 * 119.99662 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7037 1.4209 5 6 3.5986 1.3129 2.0899 6 6 3.7946 1.7308 3.3927 7 7 2.9014 2.4874 4.0000 8 6 1.7992 2.8821 3.3929 9 6 1.5353 2.5035 2.0903 10 6 2.1389 -1.1672 -0.0005 11 8 3.3517 -1.1672 -0.0010 12 6 1.3853 -2.4723 -0.0005 13 6 2.3796 -3.6352 -0.0005 14 6 1.6145 -4.9603 -0.0012 15 6 2.5938 -6.1057 -0.0005 16 1 3.6556 -5.9084 0.0007 17 6 2.1342 -7.4056 -0.0004 18 7 0.8411 -7.6459 -0.0004 19 14 3.3480 -8.8255 -0.0004 20 1 3.6697 -9.2016 1.3998 21 1 2.7480 -9.9897 -0.7002 22 1 4.5913 -8.4139 -0.7004 23 1 -0.3633 0.0001 -1.0277 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5138 26 1 1.6085 2.0284 -0.5137 27 1 3.1499 1.1384 -0.5139 28 1 4.3318 0.6901 1.5993 29 1 4.6874 1.4304 3.9209 30 1 1.0928 3.5051 3.9214 31 1 0.6290 2.8270 1.5998 32 1 0.7590 -2.5302 0.8896 33 1 0.7584 -2.5298 -0.8904 34 1 3.0063 -3.5775 -0.8905 35 1 3.0062 -3.5775 0.8894 36 1 0.9876 -5.0182 0.8886 37 1 0.9881 -5.0177 -0.8914 38 1 0.5178 -8.5604 -0.0007 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594220244.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:06 Heat of formation + Delta-G solvation = -36.819770 kcal Electronic energy + Delta-G solvation = -18927.460331 eV Core-core repulsion = 15961.501646 eV Total energy + Delta-G solvation = -2965.958686 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.43647 -40.54423 -36.96367 -36.12313 -34.31702 -33.65385 -32.14137 -30.09849 -28.55079 -27.16079 -25.46824 -24.37364 -23.22284 -22.01881 -20.15490 -18.52660 -18.03645 -17.80641 -17.22094 -16.96855 -16.66617 -16.49319 -16.41581 -15.36491 -14.90286 -14.61224 -14.54338 -14.16703 -14.06302 -13.78718 -13.56840 -13.35719 -13.12048 -13.07368 -12.62672 -12.49610 -12.41848 -12.24142 -11.57174 -11.46521 -11.26517 -11.00047 -10.57412 -10.55165 -10.49375 -10.09592 -9.69992 -8.21154 -6.31168 0.17487 0.19725 1.39060 1.40039 1.51643 1.61441 2.07598 2.41048 2.90371 3.11833 3.55883 3.61233 3.67274 3.86749 4.15925 4.17273 4.20103 4.21420 4.33186 4.40108 4.59295 4.68143 4.76533 4.79349 4.88499 4.94758 4.99398 5.02436 5.08957 5.17584 5.36183 5.50281 5.54367 5.73783 5.77029 5.85259 6.24741 6.32836 6.84027 7.00080 7.16728 7.37576 8.90370 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.029523 B = 0.003585 C = 0.003413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.184027 B = 7807.984525 C = 8201.725555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.611 5.611 3 C 0.152 3.848 4 C -0.069 4.069 5 C -0.167 4.167 6 C 0.081 3.919 7 N -0.511 5.511 8 C 0.085 3.915 9 C -0.150 4.150 10 C 0.512 3.488 11 O -0.576 6.576 12 C -0.128 4.128 13 C -0.081 4.081 14 C 0.027 3.973 15 C -0.548 4.548 16 H 0.050 0.950 17 C 0.004 3.996 18 N -0.929 5.929 19 Si 0.961 3.039 20 H -0.272 1.272 21 H -0.277 1.277 22 H -0.268 1.268 23 H 0.077 0.923 24 H 0.074 0.926 25 H 0.098 0.902 26 H 0.129 0.871 27 H 0.076 0.924 28 H 0.122 0.878 29 H 0.163 0.837 30 H 0.184 0.816 31 H 0.172 0.828 32 H 0.102 0.898 33 H 0.107 0.893 34 H 0.041 0.959 35 H 0.037 0.963 36 H -0.001 1.001 37 H 0.002 0.998 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.770 23.532 1.430 23.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.344 5.344 3 C 0.030 3.970 4 C -0.078 4.078 5 C -0.188 4.188 6 C -0.075 4.075 7 N -0.221 5.221 8 C -0.072 4.072 9 C -0.170 4.170 10 C 0.302 3.698 11 O -0.455 6.455 12 C -0.167 4.167 13 C -0.120 4.120 14 C -0.010 4.010 15 C -0.586 4.586 16 H 0.069 0.931 17 C -0.194 4.194 18 N -0.569 5.569 19 Si 0.786 3.214 20 H -0.198 1.198 21 H -0.202 1.202 22 H -0.193 1.193 23 H 0.096 0.904 24 H 0.093 0.907 25 H 0.116 0.884 26 H 0.147 0.853 27 H 0.095 0.905 28 H 0.140 0.860 29 H 0.180 0.820 30 H 0.201 0.799 31 H 0.189 0.811 32 H 0.120 0.880 33 H 0.126 0.874 34 H 0.060 0.940 35 H 0.056 0.944 36 H 0.017 0.983 37 H 0.020 0.980 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.129 23.657 2.266 23.970 hybrid contribution 0.590 -1.422 -0.727 1.703 sum -2.538 22.235 1.539 22.432 Atomic orbital electron populations 1.22149 0.76688 1.04825 1.03704 1.47980 1.08561 1.04554 1.73326 1.20471 0.99076 0.85808 0.91633 1.20883 0.93876 0.95450 0.97633 1.22262 0.99295 1.00575 0.96620 1.22952 0.98352 0.93865 0.92282 1.67690 1.03796 1.11742 1.38896 1.23329 0.94003 0.97028 0.92837 1.22378 1.00600 0.98070 0.95926 1.21109 0.87712 0.86439 0.74559 1.90638 1.15887 1.87940 1.51025 1.21688 0.99239 0.90594 1.05194 1.21159 0.97045 0.93620 1.00134 1.19008 0.94864 0.91665 0.95464 1.21686 0.93605 0.92553 1.50795 0.93127 1.25897 0.97094 1.01773 0.94650 1.70065 1.14258 1.21016 1.51542 0.85508 0.79008 0.78380 0.78535 1.19775 1.20212 1.19255 0.90437 0.90720 0.88369 0.85340 0.90533 0.85950 0.82010 0.79943 0.81085 0.88033 0.87438 0.94025 0.94427 0.98266 0.97958 0.92636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.87 10.24 127.77 1.31 2.18 16 2 N -0.61 -12.96 2.86 -851.13 -2.43 -15.39 16 3 C 0.15 2.73 5.58 85.63 0.48 3.21 16 4 C -0.07 -1.36 5.50 -19.67 -0.11 -1.46 16 5 C -0.17 -4.09 9.82 22.36 0.22 -3.87 16 6 C 0.08 1.93 11.18 84.68 0.95 2.87 16 7 N -0.51 -12.00 10.36 -195.84 -2.03 -14.03 16 8 C 0.08 1.45 11.18 84.68 0.95 2.40 16 9 C -0.15 -2.16 9.82 22.36 0.22 -1.94 16 10 C 0.51 15.96 7.67 87.66 0.67 16.63 16 11 O -0.58 -22.48 15.23 -3.02 -0.05 -22.53 16 12 C -0.13 -4.16 4.25 29.85 0.13 -4.03 16 13 C -0.08 -3.61 4.44 30.60 0.14 -3.47 16 14 C 0.03 1.44 4.97 29.85 0.15 1.59 16 15 C -0.55 -32.47 9.11 25.60 0.23 -32.23 16 16 H 0.05 2.97 7.74 -2.91 -0.02 2.95 16 17 C 0.00 0.23 5.46 84.65 0.46 0.69 16 18 N -0.93 -56.43 13.29 21.45 0.28 -56.14 16 19 Si 0.96 45.33 29.54 68.60 2.03 47.36 16 20 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 21 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 22 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 23 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 24 H 0.07 1.06 6.44 -2.39 -0.02 1.05 16 25 H 0.10 0.70 8.07 -2.39 -0.02 0.68 16 26 H 0.13 1.25 8.03 -2.39 -0.02 1.23 16 27 H 0.08 1.71 7.38 -2.39 -0.02 1.69 16 28 H 0.12 3.40 7.72 -2.91 -0.02 3.38 16 29 H 0.16 3.30 8.06 -2.91 -0.02 3.28 16 30 H 0.18 1.88 8.06 -2.91 -0.02 1.85 16 31 H 0.17 1.08 8.06 -2.91 -0.02 1.05 16 32 H 0.10 3.01 7.40 -2.39 -0.02 2.99 16 33 H 0.11 3.08 8.11 -2.38 -0.02 3.06 16 34 H 0.04 1.92 8.10 -2.39 -0.02 1.90 16 35 H 0.04 1.75 8.10 -2.39 -0.02 1.73 16 36 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 37 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 38 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 Total: -1.00 -76.07 325.83 4.62 -71.45 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: 1.03 Total: 6.72 kcal Atomic # 6 Polarization: -23.24 SS G_CDS: 5.79 Total: -17.45 kcal Atomic # 7 Polarization: -81.39 SS G_CDS: -4.18 Total: -85.56 kcal Atomic # 8 Polarization: -22.48 SS G_CDS: -0.05 Total: -22.53 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -76.07 4.62 -71.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594220244.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.627 kcal (2) G-P(sol) polarization free energy of solvation -76.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds