Wall clock time and date at job start Mon Mar 30 2020 06:30:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38221 * 120.41752 * 2 1 4 4 N 1.31858 * 120.76029 * 180.02562 * 3 2 1 5 5 C 1.31879 * 121.72586 * 359.70567 * 4 3 2 6 6 C 1.38179 * 120.76582 * 0.58341 * 5 4 3 7 7 C 1.50706 * 120.42231 * 179.69910 * 6 5 4 8 8 N 1.46497 * 109.47174 * 269.72747 * 7 6 5 9 9 C 1.34777 * 119.99525 * 179.97438 * 8 7 6 10 10 O 1.21283 * 120.00463 * 0.02562 * 9 8 7 11 11 C 1.50700 * 119.99675 * 179.72583 * 9 8 7 12 12 C 1.53004 * 109.47208 * 180.27843 * 11 9 8 13 13 C 1.52997 * 109.47000 * 179.97438 * 12 11 9 14 14 C 1.50703 * 109.46940 * 179.97438 * 13 12 11 15 15 H 1.08001 * 120.00043 * 0.02562 * 14 13 12 16 16 C 1.37875 * 120.00213 * 180.02562 * 14 13 12 17 17 N 1.31516 * 120.00298 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 119.99907 * 0.02562 * 16 14 13 19 19 H 1.48498 * 109.47136 * 89.99860 * 18 16 14 20 20 H 1.48503 * 109.47098 * 209.99926 * 18 16 14 21 21 H 1.48504 * 109.46915 * 329.99781 * 18 16 14 22 22 C 1.38625 * 120.41847 * 180.02562 * 2 1 3 23 23 H 1.09003 * 109.47006 * 269.97366 * 1 2 3 24 24 H 1.08998 * 109.47155 * 29.97275 * 1 2 3 25 25 H 1.09001 * 109.47207 * 149.97816 * 1 2 3 26 26 H 1.08001 * 119.62374 * 0.02562 * 3 2 1 27 27 H 1.08008 * 119.62032 * 180.30897 * 5 4 3 28 28 H 1.08995 * 109.46956 * 149.72451 * 7 6 5 29 29 H 1.09001 * 109.46317 * 29.72898 * 7 6 5 30 30 H 0.97000 * 120.00580 * 0.02562 * 8 7 6 31 31 H 1.09009 * 109.47352 * 300.27556 * 11 9 8 32 32 H 1.08998 * 109.47585 * 60.27844 * 11 9 8 33 33 H 1.09000 * 109.46887 * 300.00372 * 12 11 9 34 34 H 1.08998 * 109.46846 * 59.99549 * 12 11 9 35 35 H 1.08995 * 109.47672 * 299.99669 * 13 12 11 36 36 H 1.09001 * 109.47109 * 60.00906 * 13 12 11 37 37 H 0.96997 * 120.00396 * 180.02562 * 17 16 14 38 38 H 1.08005 * 120.79083 * 359.97438 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1920 0.0000 4 7 3.5254 1.1999 -0.0005 5 6 4.2256 0.0823 0.0047 6 6 3.5948 -1.1471 -0.0011 7 6 4.4026 -2.4193 -0.0019 8 7 4.6638 -2.8311 -1.3833 9 6 5.3744 -3.9494 -1.6301 10 8 5.7973 -4.6150 -0.7087 11 6 5.6379 -4.3764 -3.0512 12 6 6.4538 -5.6707 -3.0519 13 6 6.7206 -6.1045 -4.4946 14 6 7.5248 -7.3790 -4.4953 15 1 7.8160 -7.8343 -3.5603 16 6 7.8888 -7.9639 -5.6896 17 7 8.5902 -9.0764 -5.6903 18 14 7.3858 -7.1760 -7.3070 19 1 8.4368 -6.2206 -7.7402 20 1 7.2185 -8.2297 -8.3399 21 1 6.1021 -6.4515 -7.1264 22 6 2.2089 -1.1954 -0.0005 23 1 -0.3633 -0.0005 1.0277 24 1 -0.3633 0.8902 -0.5134 25 1 -0.3634 -0.8898 -0.5142 26 1 1.6675 2.1277 0.0004 27 1 5.3047 0.1285 0.0092 28 1 3.8463 -3.2032 0.5120 29 1 5.3488 -2.2490 0.5117 30 1 4.3260 -2.2986 -2.1203 31 1 4.6896 -4.5444 -3.5619 32 1 6.1954 -3.5952 -3.5679 33 1 7.4020 -5.5027 -2.5412 34 1 5.8963 -6.4519 -2.5351 35 1 5.7723 -6.2726 -5.0049 36 1 7.2781 -5.3234 -5.0116 37 1 8.8466 -9.4877 -6.5305 38 1 1.6887 -2.1420 -0.0005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594331223.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:07 Heat of formation + Delta-G solvation = -27.431636 kcal Electronic energy + Delta-G solvation = -18222.663965 eV Core-core repulsion = 15257.112379 eV Total energy + Delta-G solvation = -2965.551586 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.79605 -39.44156 -35.50013 -34.26844 -34.02981 -32.42949 -31.93509 -28.70993 -27.76651 -26.58222 -23.79201 -23.30166 -21.54360 -20.56663 -19.83648 -17.45607 -17.09487 -17.01643 -16.51041 -15.98960 -15.50369 -14.69142 -14.53023 -14.15895 -13.95682 -13.61879 -13.47581 -13.36238 -13.11390 -12.92331 -12.72150 -12.62729 -12.00673 -11.84292 -11.57370 -10.97984 -10.78001 -10.25245 -9.99690 -9.86421 -9.84152 -9.69770 -9.52120 -9.22317 -9.14229 -9.10133 -8.50323 -5.99980 -3.97767 0.58811 0.82742 2.82724 3.10950 3.32131 3.39203 3.42009 3.54175 3.98129 4.25742 4.30744 4.47725 4.53246 4.56215 4.71900 4.97024 5.04977 5.10044 5.26353 5.33283 5.35764 5.48808 5.54919 5.57869 5.59431 5.76897 5.84607 6.09922 6.25869 6.32777 6.56643 6.69542 6.92917 7.37915 7.46371 7.47994 7.55812 7.83431 8.34716 8.60023 9.06812 9.62053 11.13729 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.036020 B = 0.002907 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.164225 B = 9630.432214 C = 9882.240268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.140 4.140 3 C 0.101 3.899 4 N -0.482 5.482 5 C 0.110 3.890 6 C -0.152 4.152 7 C 0.165 3.835 8 N -0.738 5.738 9 C 0.513 3.487 10 O -0.533 6.533 11 C -0.141 4.141 12 C -0.087 4.087 13 C -0.015 4.015 14 C -0.519 4.519 15 H 0.073 0.927 16 C 0.064 3.936 17 N -0.905 5.905 18 Si 0.881 3.119 19 H -0.278 1.278 20 H -0.289 1.289 21 H -0.266 1.266 22 C -0.059 4.059 23 H 0.074 0.926 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.155 0.845 27 H 0.158 0.842 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.400 0.600 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.015 0.985 36 H 0.011 0.989 37 H 0.262 0.738 38 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.999 21.657 10.587 29.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.142 4.142 3 C -0.056 4.056 4 N -0.189 5.189 5 C -0.047 4.047 6 C -0.154 4.154 7 C 0.041 3.959 8 N -0.392 5.392 9 C 0.301 3.699 10 O -0.409 6.409 11 C -0.181 4.181 12 C -0.126 4.126 13 C -0.052 4.052 14 C -0.557 4.557 15 H 0.091 0.909 16 C -0.137 4.137 17 N -0.544 5.544 18 Si 0.709 3.291 19 H -0.203 1.203 20 H -0.215 1.215 21 H -0.191 1.191 22 C -0.086 4.086 23 H 0.092 0.908 24 H 0.090 0.910 25 H 0.089 0.911 26 H 0.173 0.827 27 H 0.175 0.825 28 H 0.095 0.905 29 H 0.097 0.903 30 H 0.234 0.766 31 H 0.106 0.894 32 H 0.107 0.893 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.033 0.967 36 H 0.029 0.971 37 H 0.072 0.928 38 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -16.146 21.822 11.151 29.347 hybrid contribution -0.816 -0.185 -1.253 1.506 sum -16.961 21.637 9.898 29.220 Atomic orbital electron populations 1.20741 0.89961 1.03365 1.02770 1.20978 0.97801 0.94041 1.01346 1.22758 0.90000 0.97583 0.95276 1.67746 1.08330 1.31090 1.11735 1.22769 1.00542 0.86961 0.94415 1.20961 0.94642 0.96512 1.03268 1.20045 0.99005 0.92155 0.84740 1.46190 1.57493 1.27797 1.07674 1.21211 0.76597 0.79352 0.92722 1.90705 1.50234 1.53174 1.46753 1.21877 1.02900 1.01579 0.91740 1.21270 0.98769 0.92961 0.99552 1.19608 0.96564 0.96858 0.92171 1.21168 1.33062 1.06900 0.94548 0.90925 1.25056 0.94704 0.94753 0.99156 1.69922 1.38562 1.19121 1.26777 0.86758 0.79575 0.79146 0.83638 1.20343 1.21463 1.19061 1.21499 0.93305 0.98541 0.95218 0.90757 0.91025 0.91112 0.82743 0.82504 0.90523 0.90310 0.76639 0.89358 0.89310 0.92053 0.92070 0.96676 0.97090 0.92794 0.84546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.48 10.04 36.01 0.36 -0.12 16 2 C -0.14 -0.95 5.90 -104.48 -0.62 -1.57 16 3 C 0.10 0.78 10.86 -17.55 -0.19 0.59 16 4 N -0.48 -4.70 10.36 -13.25 -0.14 -4.83 16 5 C 0.11 0.98 10.86 -17.55 -0.19 0.79 16 6 C -0.15 -1.26 5.27 -104.48 -0.55 -1.81 16 7 C 0.16 1.59 5.83 -5.19 -0.03 1.56 16 8 N -0.74 -7.92 5.55 -61.47 -0.34 -8.26 16 9 C 0.51 7.68 7.83 -10.98 -0.09 7.60 16 10 O -0.53 -10.22 15.98 5.55 0.09 -10.14 16 11 C -0.14 -2.14 5.70 -27.88 -0.16 -2.30 16 12 C -0.09 -1.81 4.44 -26.73 -0.12 -1.92 16 13 C -0.01 -0.35 4.04 -27.88 -0.11 -0.46 16 14 C -0.52 -15.19 9.66 -34.44 -0.33 -15.52 16 15 H 0.07 2.31 7.99 -52.49 -0.42 1.89 16 16 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 17 N -0.90 -28.45 13.96 55.43 0.77 -27.67 16 18 Si 0.88 21.80 27.47 -169.99 -4.67 17.14 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 21 H -0.27 -6.23 6.54 56.52 0.37 -5.86 16 22 C -0.06 -0.44 9.54 -39.28 -0.37 -0.82 16 23 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 24 H 0.07 0.23 8.09 -51.93 -0.42 -0.19 16 25 H 0.07 0.28 8.10 -51.93 -0.42 -0.14 16 26 H 0.16 0.82 8.06 -52.49 -0.42 0.40 16 27 H 0.16 1.19 8.06 -52.48 -0.42 0.77 16 28 H 0.08 0.77 8.09 -51.93 -0.42 0.35 16 29 H 0.08 0.79 8.09 -51.93 -0.42 0.37 16 30 H 0.40 3.40 8.46 -40.82 -0.35 3.06 16 31 H 0.09 1.18 8.14 -51.92 -0.42 0.76 16 32 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.06 1.34 8.10 -51.93 -0.42 0.92 16 34 H 0.06 1.33 8.10 -51.93 -0.42 0.91 16 35 H 0.01 0.35 7.20 -51.93 -0.37 -0.02 16 36 H 0.01 0.25 7.57 -51.93 -0.39 -0.14 16 37 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 38 H 0.14 0.84 8.06 -52.48 -0.42 0.42 16 LS Contribution 326.22 15.07 4.92 4.92 Total: -1.00 -34.94 326.22 -7.62 -42.57 By element: Atomic # 1 Polarization: 4.23 SS G_CDS: -5.76 Total: -1.53 kcal Atomic # 6 Polarization: -9.68 SS G_CDS: -2.50 Total: -12.18 kcal Atomic # 7 Polarization: -41.06 SS G_CDS: 0.30 Total: -40.77 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: 0.09 Total: -10.14 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.67 Total: 17.14 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -34.94 -7.62 -42.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594331223.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.135 kcal (2) G-P(sol) polarization free energy of solvation -34.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds