Wall clock time and date at job start Mon Mar 30 2020 06:30:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38221 * 120.41752 * 2 1 4 4 N 1.31858 * 120.76029 * 180.02562 * 3 2 1 5 5 C 1.31879 * 121.72586 * 359.70567 * 4 3 2 6 6 C 1.38179 * 120.76582 * 0.58341 * 5 4 3 7 7 C 1.50706 * 120.42231 * 179.69910 * 6 5 4 8 8 N 1.46497 * 109.47174 * 269.72747 * 7 6 5 9 9 C 1.34777 * 119.99525 * 179.97438 * 8 7 6 10 10 O 1.21283 * 120.00463 * 0.02562 * 9 8 7 11 11 C 1.50700 * 119.99675 * 179.72583 * 9 8 7 12 12 C 1.53004 * 109.47208 * 180.27843 * 11 9 8 13 13 C 1.52997 * 109.47000 * 179.97438 * 12 11 9 14 14 C 1.50703 * 109.46940 * 179.97438 * 13 12 11 15 15 H 1.08001 * 120.00043 * 0.02562 * 14 13 12 16 16 C 1.37875 * 120.00213 * 180.02562 * 14 13 12 17 17 N 1.31516 * 120.00298 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 119.99907 * 0.02562 * 16 14 13 19 19 H 1.48498 * 109.47136 * 89.99860 * 18 16 14 20 20 H 1.48503 * 109.47098 * 209.99926 * 18 16 14 21 21 H 1.48504 * 109.46915 * 329.99781 * 18 16 14 22 22 C 1.38625 * 120.41847 * 180.02562 * 2 1 3 23 23 H 1.09003 * 109.47006 * 269.97366 * 1 2 3 24 24 H 1.08998 * 109.47155 * 29.97275 * 1 2 3 25 25 H 1.09001 * 109.47207 * 149.97816 * 1 2 3 26 26 H 1.08001 * 119.62374 * 0.02562 * 3 2 1 27 27 H 1.08008 * 119.62032 * 180.30897 * 5 4 3 28 28 H 1.08995 * 109.46956 * 149.72451 * 7 6 5 29 29 H 1.09001 * 109.46317 * 29.72898 * 7 6 5 30 30 H 0.97000 * 120.00580 * 0.02562 * 8 7 6 31 31 H 1.09009 * 109.47352 * 300.27556 * 11 9 8 32 32 H 1.08998 * 109.47585 * 60.27844 * 11 9 8 33 33 H 1.09000 * 109.46887 * 300.00372 * 12 11 9 34 34 H 1.08998 * 109.46846 * 59.99549 * 12 11 9 35 35 H 1.08995 * 109.47672 * 299.99669 * 13 12 11 36 36 H 1.09001 * 109.47109 * 60.00906 * 13 12 11 37 37 H 0.96997 * 120.00396 * 180.02562 * 17 16 14 38 38 H 1.08005 * 120.79083 * 359.97438 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1920 0.0000 4 7 3.5254 1.1999 -0.0005 5 6 4.2256 0.0823 0.0047 6 6 3.5948 -1.1471 -0.0011 7 6 4.4026 -2.4193 -0.0019 8 7 4.6638 -2.8311 -1.3833 9 6 5.3744 -3.9494 -1.6301 10 8 5.7973 -4.6150 -0.7087 11 6 5.6379 -4.3764 -3.0512 12 6 6.4538 -5.6707 -3.0519 13 6 6.7206 -6.1045 -4.4946 14 6 7.5248 -7.3790 -4.4953 15 1 7.8160 -7.8343 -3.5603 16 6 7.8888 -7.9639 -5.6896 17 7 8.5902 -9.0764 -5.6903 18 14 7.3858 -7.1760 -7.3070 19 1 8.4368 -6.2206 -7.7402 20 1 7.2185 -8.2297 -8.3399 21 1 6.1021 -6.4515 -7.1264 22 6 2.2089 -1.1954 -0.0005 23 1 -0.3633 -0.0005 1.0277 24 1 -0.3633 0.8902 -0.5134 25 1 -0.3634 -0.8898 -0.5142 26 1 1.6675 2.1277 0.0004 27 1 5.3047 0.1285 0.0092 28 1 3.8463 -3.2032 0.5120 29 1 5.3488 -2.2490 0.5117 30 1 4.3260 -2.2986 -2.1203 31 1 4.6896 -4.5444 -3.5619 32 1 6.1954 -3.5952 -3.5679 33 1 7.4020 -5.5027 -2.5412 34 1 5.8963 -6.4519 -2.5351 35 1 5.7723 -6.2726 -5.0049 36 1 7.2781 -5.3234 -5.0116 37 1 8.8466 -9.4877 -6.5305 38 1 1.6887 -2.1420 -0.0005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594331223.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:07 Heat of formation + Delta-G solvation = -51.782205 kcal Electronic energy + Delta-G solvation = -18223.719885 eV Core-core repulsion = 15257.112379 eV Total energy + Delta-G solvation = -2966.607505 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.44900 -40.57038 -36.53443 -35.99350 -34.54298 -34.14458 -33.09194 -30.32669 -28.21685 -27.62695 -25.30913 -24.08046 -22.30952 -22.01696 -21.24405 -18.95576 -18.08163 -17.84046 -17.71262 -17.00043 -16.74216 -16.26220 -15.28297 -15.26837 -15.14991 -14.77164 -14.51489 -14.14527 -14.00733 -13.93712 -13.80144 -13.56341 -13.22776 -13.15176 -12.69588 -12.48028 -12.39601 -11.78283 -11.72415 -11.48362 -11.31945 -11.07831 -10.74263 -10.58775 -10.46878 -10.13374 -9.83796 -8.26967 -6.32540 -0.01087 0.24927 1.39154 1.42546 1.54607 1.66034 2.22798 2.39746 2.84057 3.08166 3.38774 3.66641 3.77972 3.90934 3.98844 4.00261 4.17300 4.22989 4.27727 4.43043 4.63261 4.74777 4.81992 4.83677 4.87717 4.93485 4.98270 5.05736 5.18083 5.23540 5.29563 5.36422 5.58407 5.61754 5.69183 5.72009 6.31718 6.52696 6.76416 6.95779 7.26022 7.31917 8.90717 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.036020 B = 0.002907 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.164225 B = 9630.432214 C = 9882.240268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.136 4.136 3 C 0.093 3.907 4 N -0.508 5.508 5 C 0.099 3.901 6 C -0.151 4.151 7 C 0.168 3.832 8 N -0.715 5.715 9 C 0.515 3.485 10 O -0.585 6.585 11 C -0.131 4.131 12 C -0.081 4.081 13 C -0.010 4.010 14 C -0.540 4.540 15 H 0.020 0.980 16 C -0.004 4.004 17 N -0.957 5.957 18 Si 0.962 3.038 19 H -0.265 1.265 20 H -0.287 1.287 21 H -0.235 1.235 22 C -0.064 4.064 23 H 0.082 0.918 24 H 0.084 0.916 25 H 0.076 0.924 26 H 0.176 0.824 27 H 0.162 0.838 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.415 0.585 31 H 0.117 0.883 32 H 0.117 0.883 33 H 0.036 0.964 34 H 0.037 0.963 35 H 0.031 0.969 36 H 0.029 0.971 37 H 0.266 0.734 38 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.553 24.418 8.999 32.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.138 4.138 3 C -0.064 4.064 4 N -0.216 5.216 5 C -0.058 4.058 6 C -0.153 4.153 7 C 0.044 3.956 8 N -0.368 5.368 9 C 0.303 3.697 10 O -0.465 6.465 11 C -0.171 4.171 12 C -0.120 4.120 13 C -0.047 4.047 14 C -0.578 4.578 15 H 0.038 0.962 16 C -0.200 4.200 17 N -0.598 5.598 18 Si 0.784 3.216 19 H -0.190 1.190 20 H -0.213 1.213 21 H -0.158 1.158 22 C -0.090 4.090 23 H 0.101 0.899 24 H 0.102 0.898 25 H 0.095 0.905 26 H 0.193 0.807 27 H 0.179 0.821 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.251 0.749 31 H 0.135 0.865 32 H 0.135 0.865 33 H 0.055 0.945 34 H 0.056 0.944 35 H 0.049 0.951 36 H 0.047 0.953 37 H 0.075 0.925 38 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -18.736 24.640 9.570 32.399 hybrid contribution -0.027 -1.065 -0.640 1.243 sum -18.763 23.575 8.930 31.425 Atomic orbital electron populations 1.20801 0.87984 1.04311 1.03574 1.21248 0.99177 0.93369 1.00009 1.23196 0.89594 0.98972 0.94648 1.67753 1.09490 1.31538 1.12775 1.22879 1.00958 0.87099 0.94848 1.20749 0.94921 0.95429 1.04241 1.20024 0.99008 0.92763 0.83793 1.45956 1.55661 1.26332 1.08887 1.21140 0.76554 0.79888 0.92079 1.90699 1.52654 1.55106 1.48023 1.21726 1.03620 0.99160 0.92566 1.21049 0.98413 0.95445 0.97063 1.19552 0.96276 0.94461 0.94419 1.21574 1.34117 1.09259 0.92837 0.96207 1.26204 0.94423 0.95227 1.04134 1.70107 1.40239 1.21223 1.28255 0.85491 0.80675 0.78349 0.77071 1.18971 1.21260 1.15823 1.21726 0.92991 0.99516 0.94762 0.89911 0.89754 0.90540 0.80671 0.82089 0.90844 0.90902 0.74861 0.86478 0.86530 0.94477 0.94420 0.95098 0.95307 0.92520 0.83274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.61 10.04 71.24 0.72 0.11 16 2 C -0.14 -1.52 5.90 -19.78 -0.12 -1.64 16 3 C 0.09 1.25 10.86 84.68 0.92 2.17 16 4 N -0.51 -9.22 10.36 -195.84 -2.03 -11.25 16 5 C 0.10 1.65 10.86 84.67 0.92 2.57 16 6 C -0.15 -2.28 5.27 -19.77 -0.10 -2.38 16 7 C 0.17 3.06 5.83 85.64 0.50 3.56 16 8 N -0.72 -13.90 5.55 -466.79 -2.59 -16.49 16 9 C 0.52 14.76 7.83 87.66 0.69 15.44 16 10 O -0.59 -22.75 15.98 -3.04 -0.05 -22.79 16 11 C -0.13 -3.65 5.70 29.85 0.17 -3.48 16 12 C -0.08 -3.36 4.44 30.59 0.14 -3.23 16 13 C -0.01 -0.45 4.04 29.85 0.12 -0.33 16 14 C -0.54 -32.50 9.66 25.60 0.25 -32.25 16 15 H 0.02 1.34 7.99 -2.91 -0.02 1.31 16 16 C 0.00 -0.24 5.47 84.65 0.46 0.22 16 17 N -0.96 -61.99 13.96 21.45 0.30 -61.69 16 18 Si 0.96 43.94 27.47 68.60 1.88 45.83 16 19 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 20 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 21 H -0.24 -9.54 6.54 99.48 0.65 -8.89 16 22 C -0.06 -0.81 9.54 22.47 0.21 -0.59 16 23 H 0.08 0.36 8.14 -2.39 -0.02 0.34 16 24 H 0.08 0.28 8.09 -2.39 -0.02 0.26 16 25 H 0.08 0.37 8.10 -2.39 -0.02 0.35 16 26 H 0.18 1.43 8.06 -2.91 -0.02 1.40 16 27 H 0.16 2.35 8.06 -2.91 -0.02 2.33 16 28 H 0.07 1.42 8.09 -2.39 -0.02 1.40 16 29 H 0.07 1.45 8.09 -2.39 -0.02 1.43 16 30 H 0.41 5.75 8.46 -92.71 -0.78 4.96 16 31 H 0.12 2.63 8.14 -2.38 -0.02 2.62 16 32 H 0.12 2.65 8.14 -2.39 -0.02 2.63 16 33 H 0.04 1.67 8.10 -2.39 -0.02 1.65 16 34 H 0.04 1.69 8.10 -2.39 -0.02 1.67 16 35 H 0.03 1.35 7.20 -2.39 -0.02 1.33 16 36 H 0.03 1.24 7.57 -2.39 -0.02 1.23 16 37 H 0.27 15.94 8.31 -92.71 -0.77 15.17 16 38 H 0.15 1.47 8.06 -2.91 -0.02 1.44 16 Total: -1.00 -79.24 326.22 2.59 -76.65 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: 0.21 Total: 9.59 kcal Atomic # 6 Polarization: -24.71 SS G_CDS: 4.87 Total: -19.84 kcal Atomic # 7 Polarization: -85.10 SS G_CDS: -4.32 Total: -89.42 kcal Atomic # 8 Polarization: -22.75 SS G_CDS: -0.05 Total: -22.79 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 1.88 Total: 45.83 kcal Total: -79.24 2.59 -76.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594331223.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.868 kcal (2) G-P(sol) polarization free energy of solvation -79.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds