Wall clock time and date at job start Mon Mar 30 2020 06:33:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38221 * 120.41773 * 2 1 4 4 N 1.31862 * 120.76221 * 180.25125 * 3 2 1 5 5 C 1.31881 * 121.72315 * 0.04192 * 4 3 2 6 6 C 1.38185 * 120.76978 * 359.96041 * 5 4 3 7 7 C 1.38635 * 120.41887 * 180.27454 * 2 1 3 8 8 C 1.50701 * 120.78677 * 359.70635 * 7 2 1 9 9 N 1.46496 * 109.47230 * 79.99891 * 8 7 2 10 10 C 1.34774 * 119.99924 * 179.97438 * 9 8 7 11 11 O 1.21280 * 120.00436 * 0.02562 * 10 9 8 12 12 C 1.50700 * 119.99895 * 180.02562 * 10 9 8 13 13 C 1.53005 * 109.47277 * 180.02562 * 12 10 9 14 14 C 1.52993 * 109.47345 * 180.02562 * 13 12 10 15 15 C 1.50701 * 109.47268 * 180.02562 * 14 13 12 16 16 H 1.07998 * 119.99808 * 359.97438 * 15 14 13 17 17 C 1.37873 * 120.00078 * 180.02562 * 15 14 13 18 18 N 1.31516 * 120.00361 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00153 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47179 * 89.99451 * 19 17 15 21 21 H 1.48499 * 109.47556 * 209.99688 * 19 17 15 22 22 H 1.48507 * 109.46959 * 329.99613 * 19 17 15 23 23 H 1.08999 * 109.47245 * 269.72372 * 1 2 3 24 24 H 1.08991 * 109.46674 * 29.72400 * 1 2 3 25 25 H 1.09007 * 109.46846 * 149.72305 * 1 2 3 26 26 H 1.07993 * 119.62150 * 0.27487 * 3 2 1 27 27 H 1.08011 * 119.61586 * 179.97438 * 5 4 3 28 28 H 1.07998 * 120.41936 * 180.02562 * 6 5 4 29 29 H 1.09006 * 109.46544 * 199.99819 * 8 7 2 30 30 H 1.09000 * 109.47530 * 319.99483 * 8 7 2 31 31 H 0.97001 * 120.00401 * 0.02562 * 9 8 7 32 32 H 1.09006 * 109.47151 * 299.99808 * 12 10 9 33 33 H 1.08994 * 109.47708 * 59.99976 * 12 10 9 34 34 H 1.09006 * 109.46680 * 299.99859 * 13 12 10 35 35 H 1.09004 * 109.46944 * 59.99783 * 13 12 10 36 36 H 1.09006 * 109.47113 * 299.99589 * 14 13 12 37 37 H 1.09000 * 109.47345 * 59.99488 * 14 13 12 38 38 H 0.96999 * 120.00761 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1920 0.0000 4 7 3.5254 1.1999 -0.0050 5 6 4.2256 0.0823 -0.0109 6 6 3.5948 -1.1471 -0.0113 7 6 2.2090 -1.1955 -0.0057 8 6 1.4831 -2.5162 -0.0054 9 7 1.0317 -2.8256 -1.3643 10 6 0.3554 -3.9660 -1.6064 11 8 0.1200 -4.7358 -0.6993 12 6 -0.1085 -4.2846 -3.0044 13 6 -0.8456 -5.6254 -3.0041 14 6 -1.3160 -5.9492 -4.4234 15 6 -2.0425 -7.2695 -4.4230 16 1 -2.1569 -7.8225 -3.5024 17 6 -2.5602 -7.7718 -5.5979 18 7 -2.4206 -7.0986 -6.7190 19 14 -3.4601 -9.4087 -5.5975 20 1 -4.9061 -9.1787 -5.3491 21 1 -3.2835 -10.0712 -6.9148 22 1 -2.9063 -10.2778 -4.5282 23 1 -0.3634 -0.0050 1.0276 24 1 -0.3632 0.8924 -0.5095 25 1 -0.3633 -0.8876 -0.5182 26 1 1.6675 2.1276 0.0045 27 1 5.3047 0.1285 -0.0153 28 1 4.1737 -2.0588 -0.0158 29 1 2.1561 -3.3005 0.3414 30 1 0.6212 -2.4570 0.6592 31 1 1.2201 -2.2102 -2.0900 32 1 -0.7816 -3.5005 -3.3514 33 1 0.7535 -4.3437 -3.6687 34 1 -0.1729 -6.4097 -2.6569 35 1 -1.7078 -5.5658 -2.3398 36 1 -1.9886 -5.1649 -4.7711 37 1 -0.4536 -6.0087 -5.0873 38 1 -2.7845 -7.4522 -7.5458 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594344670.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:49 Heat of formation + Delta-G solvation = -29.338861 kcal Electronic energy + Delta-G solvation = -18461.139168 eV Core-core repulsion = 15495.504879 eV Total energy + Delta-G solvation = -2965.634289 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.80957 -39.39631 -35.74713 -34.18599 -33.40195 -32.40346 -31.93680 -28.57852 -27.67609 -26.45061 -23.77567 -23.00401 -21.79601 -20.70093 -19.81364 -17.43433 -17.10787 -16.40691 -16.16657 -15.62904 -15.46155 -15.37905 -14.49798 -14.42468 -13.99557 -13.67244 -13.46350 -13.08126 -12.96108 -12.73842 -12.43247 -12.26791 -11.82278 -11.80405 -11.34148 -10.81115 -10.62747 -10.54005 -10.19989 -9.81408 -9.69208 -9.66737 -9.30112 -9.24286 -9.13585 -9.01727 -8.32451 -5.98099 -3.99590 0.73624 0.77006 2.85777 3.17159 3.34482 3.40337 3.45056 3.56695 4.08500 4.18134 4.36595 4.48991 4.53905 4.61770 5.03817 5.06572 5.15199 5.25358 5.29328 5.37997 5.39746 5.51914 5.59624 5.68991 5.70269 5.78093 5.98785 6.22396 6.31176 6.35760 6.71152 6.91665 7.15013 7.50303 7.60436 7.70355 7.82916 8.02503 8.37307 8.46462 9.07578 9.64457 11.13415 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.045827 B = 0.002870 C = 0.002856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.850722 B = 9753.475229 C = 9803.056108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.118 4.118 3 C 0.096 3.904 4 N -0.480 5.480 5 C 0.089 3.911 6 C -0.150 4.150 7 C -0.063 4.063 8 C 0.159 3.841 9 N -0.736 5.736 10 C 0.514 3.486 11 O -0.535 6.535 12 C -0.138 4.138 13 C -0.095 4.095 14 C 0.020 3.980 15 C -0.518 4.518 16 H 0.056 0.944 17 C 0.055 3.945 18 N -0.898 5.898 19 Si 0.892 3.108 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.273 1.273 23 H 0.076 0.924 24 H 0.073 0.927 25 H 0.076 0.924 26 H 0.156 0.844 27 H 0.157 0.843 28 H 0.138 0.862 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.401 0.599 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.016 0.984 37 H 0.016 0.984 38 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.803 17.106 12.801 23.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.121 4.121 3 C -0.061 4.061 4 N -0.188 5.188 5 C -0.067 4.067 6 C -0.170 4.170 7 C -0.072 4.072 8 C 0.036 3.964 9 N -0.391 5.391 10 C 0.302 3.698 11 O -0.411 6.411 12 C -0.178 4.178 13 C -0.133 4.133 14 C -0.017 4.017 15 C -0.556 4.556 16 H 0.074 0.926 17 C -0.145 4.145 18 N -0.538 5.538 19 Si 0.720 3.280 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.198 1.198 23 H 0.094 0.906 24 H 0.092 0.908 25 H 0.095 0.905 26 H 0.173 0.827 27 H 0.174 0.826 28 H 0.156 0.844 29 H 0.095 0.905 30 H 0.098 0.902 31 H 0.235 0.765 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.034 0.966 37 H 0.034 0.966 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 11.030 17.306 13.288 24.449 hybrid contribution -0.719 -1.310 -0.440 1.558 sum 10.311 15.996 12.848 22.962 Atomic orbital electron populations 1.20846 0.89850 1.03876 1.03076 1.20914 0.97846 0.93474 0.99841 1.22712 0.89886 0.97452 0.96088 1.67676 1.08376 1.31537 1.11195 1.22765 1.00471 0.87530 0.95974 1.22149 0.94378 1.00027 1.00475 1.20268 0.93880 0.94867 0.98165 1.20109 0.98570 0.92077 0.85686 1.46167 1.59356 1.23854 1.09681 1.21320 0.76415 0.79765 0.92302 1.90688 1.55501 1.48059 1.46845 1.21856 1.02054 1.02192 0.91680 1.21452 0.98681 0.92263 1.00902 1.19132 0.96151 0.96553 0.89848 1.21272 1.35038 1.05178 0.94156 0.92572 1.25020 0.96364 0.97491 0.95644 1.69959 1.46297 1.38595 0.98909 0.86592 0.80106 0.84028 0.77288 1.20669 1.21258 1.19835 0.90550 0.90818 0.90501 0.82652 0.82586 0.84431 0.90463 0.90207 0.76534 0.89299 0.89299 0.92689 0.92676 0.96612 0.96604 0.93056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.83 9.35 36.01 0.34 -0.49 16 2 C -0.12 -0.97 5.90 -104.48 -0.62 -1.59 16 3 C 0.10 0.81 10.86 -17.54 -0.19 0.62 16 4 N -0.48 -4.71 10.36 -13.25 -0.14 -4.85 16 5 C 0.09 0.73 11.18 -17.55 -0.20 0.54 16 6 C -0.15 -1.19 9.78 -39.44 -0.39 -1.58 16 7 C -0.06 -0.55 5.29 -104.32 -0.55 -1.10 16 8 C 0.16 1.59 4.98 -5.20 -0.03 1.57 16 9 N -0.74 -8.14 4.97 -61.47 -0.31 -8.45 16 10 C 0.51 7.86 7.83 -10.99 -0.09 7.77 16 11 O -0.54 -10.33 15.98 5.56 0.09 -10.24 16 12 C -0.14 -2.21 5.70 -27.88 -0.16 -2.37 16 13 C -0.09 -2.02 4.44 -26.73 -0.12 -2.14 16 14 C 0.02 0.52 4.97 -27.89 -0.14 0.38 16 15 C -0.52 -14.97 9.11 -34.44 -0.31 -15.28 16 16 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 17 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 18 N -0.90 -27.07 13.29 55.43 0.74 -26.33 16 19 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 20 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 23 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 24 H 0.07 0.41 8.09 -51.93 -0.42 -0.01 16 25 H 0.08 0.62 6.53 -51.93 -0.34 0.28 16 26 H 0.16 0.96 8.06 -52.49 -0.42 0.54 16 27 H 0.16 0.90 8.06 -52.48 -0.42 0.47 16 28 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 29 H 0.08 0.81 8.04 -51.93 -0.42 0.39 16 30 H 0.08 0.84 7.40 -51.93 -0.38 0.46 16 31 H 0.40 3.62 8.46 -40.82 -0.35 3.27 16 32 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 34 H 0.05 1.22 8.10 -51.93 -0.42 0.80 16 35 H 0.05 1.22 8.10 -51.93 -0.42 0.80 16 36 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 325.97 15.07 4.91 4.91 Total: -1.00 -33.93 325.97 -7.94 -41.87 By element: Atomic # 1 Polarization: 3.96 SS G_CDS: -5.67 Total: -1.72 kcal Atomic # 6 Polarization: -9.62 SS G_CDS: -2.54 Total: -12.16 kcal Atomic # 7 Polarization: -39.92 SS G_CDS: 0.29 Total: -39.63 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: 0.09 Total: -10.24 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -33.93 -7.94 -41.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594344670.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.528 kcal (2) G-P(sol) polarization free energy of solvation -33.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds