Wall clock time and date at job start Mon Mar 30 2020 06:33:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38221 * 120.41773 * 2 1 4 4 N 1.31862 * 120.76221 * 180.25125 * 3 2 1 5 5 C 1.31881 * 121.72315 * 0.04192 * 4 3 2 6 6 C 1.38185 * 120.76978 * 359.96041 * 5 4 3 7 7 C 1.38635 * 120.41887 * 180.27454 * 2 1 3 8 8 C 1.50701 * 120.78677 * 359.70635 * 7 2 1 9 9 N 1.46496 * 109.47230 * 79.99891 * 8 7 2 10 10 C 1.34774 * 119.99924 * 179.97438 * 9 8 7 11 11 O 1.21280 * 120.00436 * 0.02562 * 10 9 8 12 12 C 1.50700 * 119.99895 * 180.02562 * 10 9 8 13 13 C 1.53005 * 109.47277 * 180.02562 * 12 10 9 14 14 C 1.52993 * 109.47345 * 180.02562 * 13 12 10 15 15 C 1.50701 * 109.47268 * 180.02562 * 14 13 12 16 16 H 1.07998 * 119.99808 * 359.97438 * 15 14 13 17 17 C 1.37873 * 120.00078 * 180.02562 * 15 14 13 18 18 N 1.31516 * 120.00361 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00153 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47179 * 89.99451 * 19 17 15 21 21 H 1.48499 * 109.47556 * 209.99688 * 19 17 15 22 22 H 1.48507 * 109.46959 * 329.99613 * 19 17 15 23 23 H 1.08999 * 109.47245 * 269.72372 * 1 2 3 24 24 H 1.08991 * 109.46674 * 29.72400 * 1 2 3 25 25 H 1.09007 * 109.46846 * 149.72305 * 1 2 3 26 26 H 1.07993 * 119.62150 * 0.27487 * 3 2 1 27 27 H 1.08011 * 119.61586 * 179.97438 * 5 4 3 28 28 H 1.07998 * 120.41936 * 180.02562 * 6 5 4 29 29 H 1.09006 * 109.46544 * 199.99819 * 8 7 2 30 30 H 1.09000 * 109.47530 * 319.99483 * 8 7 2 31 31 H 0.97001 * 120.00401 * 0.02562 * 9 8 7 32 32 H 1.09006 * 109.47151 * 299.99808 * 12 10 9 33 33 H 1.08994 * 109.47708 * 59.99976 * 12 10 9 34 34 H 1.09006 * 109.46680 * 299.99859 * 13 12 10 35 35 H 1.09004 * 109.46944 * 59.99783 * 13 12 10 36 36 H 1.09006 * 109.47113 * 299.99589 * 14 13 12 37 37 H 1.09000 * 109.47345 * 59.99488 * 14 13 12 38 38 H 0.96999 * 120.00761 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1920 0.0000 4 7 3.5254 1.1999 -0.0050 5 6 4.2256 0.0823 -0.0109 6 6 3.5948 -1.1471 -0.0113 7 6 2.2090 -1.1955 -0.0057 8 6 1.4831 -2.5162 -0.0054 9 7 1.0317 -2.8256 -1.3643 10 6 0.3554 -3.9660 -1.6064 11 8 0.1200 -4.7358 -0.6993 12 6 -0.1085 -4.2846 -3.0044 13 6 -0.8456 -5.6254 -3.0041 14 6 -1.3160 -5.9492 -4.4234 15 6 -2.0425 -7.2695 -4.4230 16 1 -2.1569 -7.8225 -3.5024 17 6 -2.5602 -7.7718 -5.5979 18 7 -2.4206 -7.0986 -6.7190 19 14 -3.4601 -9.4087 -5.5975 20 1 -4.9061 -9.1787 -5.3491 21 1 -3.2835 -10.0712 -6.9148 22 1 -2.9063 -10.2778 -4.5282 23 1 -0.3634 -0.0050 1.0276 24 1 -0.3632 0.8924 -0.5095 25 1 -0.3633 -0.8876 -0.5182 26 1 1.6675 2.1276 0.0045 27 1 5.3047 0.1285 -0.0153 28 1 4.1737 -2.0588 -0.0158 29 1 2.1561 -3.3005 0.3414 30 1 0.6212 -2.4570 0.6592 31 1 1.2201 -2.2102 -2.0900 32 1 -0.7816 -3.5005 -3.3514 33 1 0.7535 -4.3437 -3.6687 34 1 -0.1729 -6.4097 -2.6569 35 1 -1.7078 -5.5658 -2.3398 36 1 -1.9886 -5.1649 -4.7711 37 1 -0.4536 -6.0087 -5.0873 38 1 -2.7845 -7.4522 -7.5458 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594344670.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:49 Heat of formation + Delta-G solvation = -51.314330 kcal Electronic energy + Delta-G solvation = -18462.092096 eV Core-core repulsion = 15495.504879 eV Total energy + Delta-G solvation = -2966.587217 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.51486 -40.55632 -36.71977 -36.04211 -34.22712 -33.95540 -33.02548 -30.06300 -28.53691 -27.49124 -25.53584 -23.69424 -22.62219 -22.17216 -21.24886 -18.72719 -18.04455 -17.79985 -17.37712 -16.73189 -16.60736 -16.42115 -16.00465 -15.25212 -15.19653 -14.76420 -14.35227 -14.23630 -13.97797 -13.78267 -13.64585 -13.52798 -13.14387 -13.01341 -12.61296 -12.50943 -12.40471 -12.39659 -11.54631 -11.47326 -11.27983 -11.05072 -10.53983 -10.51229 -10.44249 -10.17325 -9.86812 -8.19980 -6.29881 0.08421 0.15137 1.40049 1.40962 1.52509 1.63617 2.21808 2.42369 2.85365 3.13107 3.42328 3.58047 3.75039 3.89813 3.94904 4.01592 4.23173 4.27429 4.42374 4.51554 4.57418 4.72665 4.74392 4.82992 4.85669 4.98134 5.01354 5.11960 5.19767 5.21506 5.32529 5.37223 5.55230 5.73975 5.76522 5.87793 6.27873 6.48884 6.85950 6.98845 7.22513 7.38901 8.91548 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.045827 B = 0.002870 C = 0.002856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.850722 B = 9753.475229 C = 9803.056108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.119 4.119 3 C 0.088 3.912 4 N -0.503 5.503 5 C 0.082 3.918 6 C -0.149 4.149 7 C -0.071 4.071 8 C 0.163 3.837 9 N -0.714 5.714 10 C 0.520 3.480 11 O -0.580 6.580 12 C -0.131 4.131 13 C -0.082 4.082 14 C 0.025 3.975 15 C -0.547 4.547 16 H 0.052 0.948 17 C 0.003 3.997 18 N -0.930 5.930 19 Si 0.961 3.039 20 H -0.272 1.272 21 H -0.278 1.278 22 H -0.268 1.268 23 H 0.082 0.918 24 H 0.088 0.912 25 H 0.064 0.936 26 H 0.175 0.825 27 H 0.178 0.822 28 H 0.153 0.847 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.414 0.586 32 H 0.109 0.891 33 H 0.107 0.893 34 H 0.040 0.960 35 H 0.042 0.958 36 H 0.001 0.999 37 H 0.000 1.000 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.155 17.714 13.092 24.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.121 4.121 3 C -0.069 4.069 4 N -0.212 5.212 5 C -0.074 4.074 6 C -0.169 4.169 7 C -0.080 4.080 8 C 0.040 3.960 9 N -0.367 5.367 10 C 0.308 3.692 11 O -0.460 6.460 12 C -0.170 4.170 13 C -0.121 4.121 14 C -0.012 4.012 15 C -0.585 4.585 16 H 0.070 0.930 17 C -0.195 4.195 18 N -0.570 5.570 19 Si 0.786 3.214 20 H -0.197 1.197 21 H -0.204 1.204 22 H -0.193 1.193 23 H 0.100 0.900 24 H 0.107 0.893 25 H 0.083 0.917 26 H 0.192 0.808 27 H 0.195 0.805 28 H 0.171 0.829 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.250 0.750 32 H 0.127 0.873 33 H 0.125 0.875 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.019 0.981 37 H 0.019 0.981 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 11.406 17.963 13.574 25.239 hybrid contribution -0.790 -1.430 -0.527 1.717 sum 10.616 16.533 13.047 23.585 Atomic orbital electron populations 1.20853 0.89048 1.04029 1.03496 1.21036 0.98429 0.93270 0.99374 1.23042 0.89733 0.98317 0.95802 1.67704 1.09115 1.32429 1.11906 1.23149 1.01567 0.87225 0.95501 1.22334 0.94179 1.00688 0.99728 1.20186 0.94251 0.94217 0.99296 1.20101 0.98488 0.92858 0.84568 1.45909 1.57506 1.22486 1.10845 1.21019 0.76515 0.80364 0.91264 1.90679 1.57625 1.49823 1.47832 1.21683 1.02661 0.99691 0.92996 1.21163 0.98408 0.95005 0.97490 1.19023 0.94938 0.95072 0.92132 1.21705 1.35889 1.06645 0.94299 0.93021 1.25903 0.97074 1.01351 0.95178 1.70063 1.47048 1.40359 0.99537 0.85508 0.78966 0.79316 0.77642 1.19696 1.20358 1.19261 0.89988 0.89295 0.91676 0.80830 0.80502 0.82908 0.90678 0.90623 0.74978 0.87311 0.87465 0.94079 0.93951 0.98055 0.98121 0.92668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.43 9.35 71.24 0.67 -0.76 16 2 C -0.12 -1.75 5.90 -19.77 -0.12 -1.87 16 3 C 0.09 1.34 10.86 84.68 0.92 2.26 16 4 N -0.50 -9.07 10.36 -195.84 -2.03 -11.10 16 5 C 0.08 1.20 11.18 84.67 0.95 2.15 16 6 C -0.15 -2.09 9.78 22.36 0.22 -1.87 16 7 C -0.07 -1.12 5.29 -19.67 -0.10 -1.22 16 8 C 0.16 3.06 4.98 85.63 0.43 3.48 16 9 N -0.71 -14.66 4.97 -466.79 -2.32 -16.98 16 10 C 0.52 15.42 7.83 87.66 0.69 16.11 16 11 O -0.58 -22.35 15.98 -3.03 -0.05 -22.40 16 12 C -0.13 -4.06 5.70 29.85 0.17 -3.89 16 13 C -0.08 -3.56 4.44 30.59 0.14 -3.42 16 14 C 0.03 1.34 4.97 29.85 0.15 1.48 16 15 C -0.55 -32.06 9.11 25.60 0.23 -31.83 16 16 H 0.05 2.99 7.74 -2.91 -0.02 2.97 16 17 C 0.00 0.17 5.46 84.65 0.46 0.63 16 18 N -0.93 -56.32 13.29 21.45 0.28 -56.03 16 19 Si 0.96 45.02 29.54 68.60 2.03 47.05 16 20 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 21 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 22 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 23 H 0.08 0.91 8.14 -2.39 -0.02 0.90 16 24 H 0.09 0.80 8.09 -2.39 -0.02 0.78 16 25 H 0.06 0.96 6.53 -2.38 -0.02 0.94 16 26 H 0.17 1.81 8.06 -2.91 -0.02 1.79 16 27 H 0.18 1.66 8.06 -2.91 -0.02 1.64 16 28 H 0.15 1.61 8.06 -2.91 -0.02 1.58 16 29 H 0.07 1.48 8.04 -2.38 -0.02 1.47 16 30 H 0.08 1.53 7.40 -2.39 -0.02 1.51 16 31 H 0.41 6.54 8.46 -92.71 -0.78 5.75 16 32 H 0.11 2.96 8.14 -2.38 -0.02 2.94 16 33 H 0.11 2.96 8.14 -2.39 -0.02 2.94 16 34 H 0.04 1.85 8.10 -2.38 -0.02 1.83 16 35 H 0.04 1.90 8.10 -2.38 -0.02 1.88 16 36 H 0.00 0.06 8.14 -2.38 -0.02 0.04 16 37 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 38 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 Total: -1.00 -72.97 325.97 2.97 -70.00 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: 0.27 Total: 8.23 kcal Atomic # 6 Polarization: -23.55 SS G_CDS: 4.79 Total: -18.75 kcal Atomic # 7 Polarization: -80.05 SS G_CDS: -4.06 Total: -84.12 kcal Atomic # 8 Polarization: -22.35 SS G_CDS: -0.05 Total: -22.40 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -72.97 2.97 -70.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594344670.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.685 kcal (2) G-P(sol) polarization free energy of solvation -72.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds