Wall clock time and date at job start Mon Mar 30 2020 06:55:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50708 * 109.47141 * 239.99699 * 2 1 3 5 5 H 1.07995 * 119.99755 * 240.00383 * 4 2 1 6 6 C 1.37873 * 119.99729 * 60.00006 * 4 2 1 7 7 N 1.31516 * 119.99909 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99980 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46755 * 90.00221 * 8 6 4 10 10 H 1.48498 * 109.46866 * 210.00208 * 8 6 4 11 11 H 1.48496 * 109.47178 * 330.00271 * 8 6 4 12 12 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 13 13 O 1.21279 * 120.00072 * 119.99863 * 12 2 1 14 14 N 1.34777 * 119.99762 * 300.00068 * 12 2 1 15 15 C 1.46504 * 119.99858 * 359.97438 * 14 12 2 16 16 C 1.46496 * 120.00258 * 180.02562 * 14 12 2 17 17 H 1.09005 * 109.46750 * 359.97438 * 16 14 12 18 18 C 1.52996 * 109.47640 * 119.99483 * 16 14 12 19 19 C 1.50695 * 109.47345 * 239.99835 * 16 14 12 20 20 C 1.38224 * 119.61976 * 154.72254 * 19 16 14 21 21 C 1.38635 * 119.16015 * 179.70909 * 20 19 16 22 22 C 1.38676 * 118.41816 * 0.55522 * 21 20 19 23 23 C 1.38175 * 119.16293 * 359.73159 * 22 21 20 24 24 N 1.31858 * 119.61559 * 335.00171 * 19 16 14 25 25 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 26 26 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 27 27 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 28 28 H 0.97002 * 119.99804 * 180.02562 * 7 6 4 29 29 H 1.09002 * 109.46944 * 90.00712 * 15 14 12 30 30 H 1.09001 * 109.47272 * 209.99997 * 15 14 12 31 31 H 1.08996 * 109.47264 * 330.00264 * 15 14 12 32 32 H 1.09000 * 109.47163 * 300.00544 * 18 16 14 33 33 H 1.09005 * 109.47109 * 60.00147 * 18 16 14 34 34 H 1.09002 * 109.47338 * 180.02562 * 18 16 14 35 35 H 1.08002 * 120.42431 * 359.97438 * 20 19 16 36 36 H 1.08003 * 120.79096 * 180.25822 * 21 20 19 37 37 H 1.08002 * 120.41732 * 179.70605 * 22 21 20 38 38 H 1.08008 * 119.61702 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 1.3447 -2.1617 -4.4123 10 1 2.4872 -0.1403 -5.1120 11 1 3.6308 -1.7567 -3.7120 12 6 2.0324 -0.7105 1.2305 13 8 2.7296 -1.6965 1.1192 14 7 1.7067 -0.2500 2.4546 15 6 0.8649 0.9415 2.5890 16 6 2.1955 -0.9402 3.6508 17 1 2.8010 -1.7967 3.3541 18 6 3.0453 0.0218 4.4834 19 6 1.0237 -1.4142 4.4713 20 6 1.1759 -2.4956 5.3186 21 6 0.0934 -2.9198 6.0736 22 6 -1.1104 -2.2446 5.9388 23 6 -1.1888 -1.1756 5.0668 24 7 -0.1364 -0.7959 4.3685 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 0.7089 1.1613 -3.4844 29 1 -0.1832 0.6439 2.6222 30 1 1.1227 1.4667 3.5086 31 1 1.0288 1.6002 1.7362 32 1 3.8928 0.3646 3.8899 33 1 2.4395 0.8780 4.7800 34 1 3.4093 -0.4920 5.3731 35 1 2.1273 -3.0010 5.3949 36 1 0.1840 -3.7591 6.7472 37 1 -1.9758 -2.5507 6.5078 38 1 -2.1226 -0.6442 4.9564 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596972171.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:55 Heat of formation + Delta-G solvation = 9.065099 kcal Electronic energy + Delta-G solvation = -20073.770631 eV Core-core repulsion = 17109.801662 eV Total energy + Delta-G solvation = -2963.968968 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.42143 -38.83991 -35.49486 -33.84966 -32.41326 -32.25166 -30.29451 -29.17809 -26.35461 -24.97681 -24.33464 -23.50270 -22.55913 -20.61677 -18.48180 -16.95954 -16.46720 -16.01965 -15.84798 -15.36074 -14.89587 -14.56476 -14.31354 -13.86473 -13.50040 -13.19620 -12.96684 -12.83689 -12.34837 -12.10633 -11.99159 -11.68734 -11.62481 -11.06413 -10.97681 -10.91867 -10.62379 -10.27901 -10.16036 -9.90216 -9.87118 -9.41005 -8.97396 -8.85377 -8.50024 -8.20142 -7.86955 -5.95065 -3.97658 1.09205 1.27643 3.38365 3.43615 3.50295 3.67141 3.78162 3.87504 4.32703 4.53312 4.72312 4.79681 5.03584 5.13257 5.31189 5.35693 5.38634 5.51811 5.63846 5.72242 5.86905 5.91241 6.07603 6.09090 6.14646 6.30727 6.38228 6.50216 6.71862 6.82676 7.02084 7.06510 7.26334 7.59343 7.86081 8.04229 8.08781 8.22847 8.49996 9.10517 9.31768 9.67078 11.12445 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.030704 B = 0.005118 C = 0.005002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.708851 B = 5469.331290 C = 5596.332482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.034 3.966 3 H 0.052 0.948 4 C -0.498 4.498 5 H 0.072 0.928 6 C 0.058 3.942 7 N -0.897 5.897 8 Si 0.898 3.102 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.273 1.273 12 C 0.522 3.478 13 O -0.552 6.552 14 N -0.613 5.613 15 C 0.100 3.900 16 C 0.182 3.818 17 H 0.112 0.888 18 C -0.153 4.153 19 C 0.131 3.869 20 C -0.168 4.168 21 C -0.075 4.075 22 C -0.184 4.184 23 C 0.100 3.900 24 N -0.465 5.465 25 H 0.090 0.910 26 H 0.029 0.971 27 H 0.025 0.975 28 H 0.259 0.741 29 H 0.068 0.932 30 H 0.051 0.949 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.134 0.866 36 H 0.131 0.869 37 H 0.130 0.870 38 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.122 -1.541 18.280 18.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.013 3.987 3 H 0.070 0.930 4 C -0.537 4.537 5 H 0.091 0.909 6 C -0.143 4.143 7 N -0.536 5.536 8 Si 0.726 3.274 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.198 1.198 12 C 0.314 3.686 13 O -0.429 6.429 14 N -0.348 5.348 15 C -0.043 4.043 16 C 0.076 3.924 17 H 0.130 0.870 18 C -0.211 4.211 19 C -0.008 4.008 20 C -0.189 4.189 21 C -0.101 4.101 22 C -0.204 4.204 23 C -0.057 4.057 24 N -0.174 5.174 25 H 0.108 0.892 26 H 0.048 0.952 27 H 0.044 0.956 28 H 0.069 0.931 29 H 0.086 0.914 30 H 0.069 0.931 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.152 0.848 36 H 0.149 0.851 37 H 0.148 0.852 38 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -2.894 -1.238 17.474 17.755 hybrid contribution 0.128 -1.214 -0.113 1.226 sum -2.766 -2.452 17.361 17.750 Atomic orbital electron populations 1.21948 0.96493 0.99797 1.01686 1.18815 0.94291 0.96583 0.89008 0.93048 1.21171 1.30735 1.12682 0.89112 0.90941 1.24937 0.95218 0.95092 0.99006 1.69884 1.37290 1.23110 1.23351 0.86478 0.79423 0.79244 0.82208 1.20769 1.21333 1.19795 1.22089 0.78088 0.84083 0.84388 1.90494 1.38755 1.27295 1.86345 1.47924 1.52593 1.29688 1.04545 1.21804 0.95348 0.86477 1.00677 1.19805 0.90686 0.96994 0.84929 0.87002 1.22090 0.99903 0.99569 0.99586 1.21805 0.93676 0.91675 0.93654 1.21910 1.00331 0.98298 0.98340 1.21521 0.92702 0.98497 0.97413 1.22096 0.98677 0.98238 1.01396 1.22832 0.97197 0.94151 0.91567 1.67679 0.99060 1.29651 1.20970 0.89168 0.95226 0.95575 0.93084 0.91370 0.93070 0.91392 0.91285 0.92025 0.91912 0.84840 0.85071 0.85158 0.82877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.43 8.61 37.16 0.32 -3.11 16 2 C 0.03 0.88 1.83 -92.92 -0.17 0.71 16 3 H 0.05 1.38 7.40 -51.93 -0.38 0.99 16 4 C -0.50 -14.60 8.37 -34.44 -0.29 -14.89 16 5 H 0.07 2.24 6.75 -52.49 -0.35 1.89 16 6 C 0.06 1.65 5.30 -17.82 -0.09 1.55 16 7 N -0.90 -25.74 11.32 55.43 0.63 -25.11 16 8 Si 0.90 22.32 29.54 -169.99 -5.02 17.30 16 9 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 10 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 11 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 12 C 0.52 12.59 7.07 -10.98 -0.08 12.51 16 13 O -0.55 -14.90 14.79 5.56 0.08 -14.82 16 14 N -0.61 -11.79 2.69 -175.26 -0.47 -12.26 16 15 C 0.10 1.68 7.17 59.85 0.43 2.11 16 16 C 0.18 2.94 2.91 -69.09 -0.20 2.74 16 17 H 0.11 1.97 6.87 -51.93 -0.36 1.62 16 18 C -0.15 -1.97 9.15 37.16 0.34 -1.63 16 19 C 0.13 1.93 5.88 -82.59 -0.49 1.45 16 20 C -0.17 -2.05 9.76 -39.44 -0.39 -2.44 16 21 C -0.08 -0.77 10.18 -39.27 -0.40 -1.17 16 22 C -0.18 -1.85 10.11 -39.44 -0.40 -2.25 16 23 C 0.10 1.19 11.18 -17.55 -0.20 0.99 16 24 N -0.46 -6.91 7.24 -9.47 -0.07 -6.98 16 25 H 0.09 2.37 6.07 -51.93 -0.32 2.06 16 26 H 0.03 0.61 4.53 -51.93 -0.24 0.38 16 27 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 29 H 0.07 1.16 5.77 -51.93 -0.30 0.86 16 30 H 0.05 0.74 6.42 -51.93 -0.33 0.40 16 31 H 0.07 1.20 6.01 -51.93 -0.31 0.89 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.06 0.77 6.66 -51.93 -0.35 0.42 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 36 H 0.13 0.96 8.06 -52.48 -0.42 0.54 16 37 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 38 H 0.15 1.43 8.06 -52.48 -0.42 1.01 16 LS Contribution 305.88 15.07 4.61 4.61 Total: -1.00 -33.12 305.88 -6.88 -40.00 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: -5.03 Total: 0.69 kcal Atomic # 6 Polarization: -1.82 SS G_CDS: -1.61 Total: -3.43 kcal Atomic # 7 Polarization: -44.44 SS G_CDS: 0.09 Total: -44.35 kcal Atomic # 8 Polarization: -14.90 SS G_CDS: 0.08 Total: -14.82 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -33.12 -6.88 -40.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596972171.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.064 kcal (2) G-P(sol) polarization free energy of solvation -33.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds