Wall clock time and date at job start Mon Mar 30 2020 06:55:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50708 * 109.47141 * 239.99699 * 2 1 3 5 5 H 1.07995 * 119.99755 * 240.00383 * 4 2 1 6 6 C 1.37873 * 119.99729 * 60.00006 * 4 2 1 7 7 N 1.31516 * 119.99909 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99980 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46755 * 90.00221 * 8 6 4 10 10 H 1.48498 * 109.46866 * 210.00208 * 8 6 4 11 11 H 1.48496 * 109.47178 * 330.00271 * 8 6 4 12 12 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 13 13 O 1.21279 * 120.00072 * 119.99863 * 12 2 1 14 14 N 1.34777 * 119.99762 * 300.00068 * 12 2 1 15 15 C 1.46504 * 119.99858 * 359.97438 * 14 12 2 16 16 C 1.46496 * 120.00258 * 180.02562 * 14 12 2 17 17 H 1.09005 * 109.46750 * 359.97438 * 16 14 12 18 18 C 1.52996 * 109.47640 * 119.99483 * 16 14 12 19 19 C 1.50695 * 109.47345 * 239.99835 * 16 14 12 20 20 C 1.38224 * 119.61976 * 154.72254 * 19 16 14 21 21 C 1.38635 * 119.16015 * 179.70909 * 20 19 16 22 22 C 1.38676 * 118.41816 * 0.55522 * 21 20 19 23 23 C 1.38175 * 119.16293 * 359.73159 * 22 21 20 24 24 N 1.31858 * 119.61559 * 335.00171 * 19 16 14 25 25 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 26 26 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 27 27 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 28 28 H 0.97002 * 119.99804 * 180.02562 * 7 6 4 29 29 H 1.09002 * 109.46944 * 90.00712 * 15 14 12 30 30 H 1.09001 * 109.47272 * 209.99997 * 15 14 12 31 31 H 1.08996 * 109.47264 * 330.00264 * 15 14 12 32 32 H 1.09000 * 109.47163 * 300.00544 * 18 16 14 33 33 H 1.09005 * 109.47109 * 60.00147 * 18 16 14 34 34 H 1.09002 * 109.47338 * 180.02562 * 18 16 14 35 35 H 1.08002 * 120.42431 * 359.97438 * 20 19 16 36 36 H 1.08003 * 120.79096 * 180.25822 * 21 20 19 37 37 H 1.08002 * 120.41732 * 179.70605 * 22 21 20 38 38 H 1.08008 * 119.61702 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 1.3447 -2.1617 -4.4123 10 1 2.4872 -0.1403 -5.1120 11 1 3.6308 -1.7567 -3.7120 12 6 2.0324 -0.7105 1.2305 13 8 2.7296 -1.6965 1.1192 14 7 1.7067 -0.2500 2.4546 15 6 0.8649 0.9415 2.5890 16 6 2.1955 -0.9402 3.6508 17 1 2.8010 -1.7967 3.3541 18 6 3.0453 0.0218 4.4834 19 6 1.0237 -1.4142 4.4713 20 6 1.1759 -2.4956 5.3186 21 6 0.0934 -2.9198 6.0736 22 6 -1.1104 -2.2446 5.9388 23 6 -1.1888 -1.1756 5.0668 24 7 -0.1364 -0.7959 4.3685 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 0.7089 1.1613 -3.4844 29 1 -0.1832 0.6439 2.6222 30 1 1.1227 1.4667 3.5086 31 1 1.0288 1.6002 1.7362 32 1 3.8928 0.3646 3.8899 33 1 2.4395 0.8780 4.7800 34 1 3.4093 -0.4920 5.3731 35 1 2.1273 -3.0010 5.3949 36 1 0.1840 -3.7591 6.7472 37 1 -1.9758 -2.5507 6.5078 38 1 -2.1226 -0.6442 4.9564 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596972171.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:55 Heat of formation + Delta-G solvation = -11.490834 kcal Electronic energy + Delta-G solvation = -20074.662003 eV Core-core repulsion = 17109.801662 eV Total energy + Delta-G solvation = -2964.860341 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.54519 -40.40933 -37.01321 -35.90940 -33.80109 -33.28355 -31.98861 -30.39379 -27.88888 -27.08068 -25.60311 -24.42318 -24.09454 -22.03404 -20.10051 -18.41941 -17.99785 -17.60644 -17.23160 -16.59544 -16.51386 -16.05560 -15.77769 -15.13404 -14.80816 -14.71241 -14.40987 -14.11333 -13.86577 -13.59247 -13.16173 -13.14690 -12.93898 -12.86823 -12.66171 -12.64101 -12.28000 -12.21558 -11.99785 -11.97406 -11.00418 -10.76548 -10.60620 -10.47034 -10.18029 -9.87843 -9.38733 -8.14003 -6.24720 0.19102 0.42778 1.40002 1.40390 1.52768 1.90103 2.20842 2.46932 2.90539 3.14719 3.30019 3.78063 4.06655 4.09456 4.18840 4.26507 4.33097 4.39779 4.41607 4.64603 4.72915 4.76656 4.81791 4.85957 4.93039 5.00058 5.02417 5.16187 5.24879 5.26963 5.30610 5.49118 5.71685 5.76891 5.84587 5.96186 6.21505 6.62049 6.83716 7.11745 7.40147 7.50835 8.91930 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.030704 B = 0.005118 C = 0.005002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.708851 B = 5469.331290 C = 5596.332482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.031 3.969 3 H 0.040 0.960 4 C -0.530 4.530 5 H 0.046 0.954 6 C 0.019 3.981 7 N -0.911 5.911 8 Si 0.957 3.043 9 H -0.275 1.275 10 H -0.272 1.272 11 H -0.278 1.278 12 C 0.518 3.482 13 O -0.593 6.593 14 N -0.602 5.602 15 C 0.102 3.898 16 C 0.176 3.824 17 H 0.089 0.911 18 C -0.143 4.143 19 C 0.103 3.897 20 C -0.176 4.176 21 C -0.074 4.074 22 C -0.173 4.173 23 C 0.083 3.917 24 N -0.495 5.495 25 H 0.070 0.930 26 H 0.062 0.938 27 H 0.010 0.990 28 H 0.265 0.735 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.068 0.932 34 H 0.090 0.910 35 H 0.147 0.853 36 H 0.165 0.835 37 H 0.165 0.835 38 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.187 -1.827 20.168 20.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.010 3.990 3 H 0.057 0.943 4 C -0.568 4.568 5 H 0.064 0.936 6 C -0.180 4.180 7 N -0.550 5.550 8 Si 0.782 3.218 9 H -0.201 1.201 10 H -0.197 1.197 11 H -0.203 1.203 12 C 0.309 3.691 13 O -0.473 6.473 14 N -0.334 5.334 15 C -0.040 4.040 16 C 0.072 3.928 17 H 0.107 0.893 18 C -0.201 4.201 19 C -0.035 4.035 20 C -0.196 4.196 21 C -0.099 4.099 22 C -0.192 4.192 23 C -0.074 4.074 24 N -0.205 5.205 25 H 0.089 0.911 26 H 0.080 0.920 27 H 0.029 0.971 28 H 0.074 0.926 29 H 0.088 0.912 30 H 0.098 0.902 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.087 0.913 34 H 0.108 0.892 35 H 0.164 0.836 36 H 0.183 0.817 37 H 0.183 0.817 38 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -3.980 -1.490 19.407 19.867 hybrid contribution 0.384 -1.124 -0.581 1.322 sum -3.595 -2.613 18.826 19.343 Atomic orbital electron populations 1.21748 0.95327 0.98821 1.02258 1.18716 0.95171 0.95671 0.89421 0.94265 1.21293 1.31605 1.12696 0.91225 0.93556 1.25612 0.95193 0.95764 1.01404 1.69960 1.37217 1.23530 1.24275 0.85577 0.78605 0.78537 0.79045 1.20053 1.19707 1.20342 1.21691 0.78137 0.83667 0.85620 1.90460 1.40724 1.28951 1.87182 1.47825 1.51583 1.29836 1.04181 1.21866 0.95025 0.85513 1.01633 1.19994 0.91951 0.96763 0.84141 0.89278 1.22020 0.99000 0.99254 0.99812 1.21537 0.93342 0.93472 0.95170 1.22111 1.01851 0.97504 0.98111 1.21954 0.91946 0.99025 0.97006 1.22501 0.99745 0.96783 1.00218 1.23289 0.97154 0.95190 0.91743 1.67539 0.99714 1.30845 1.22388 0.91150 0.91960 0.97104 0.92586 0.91162 0.90190 0.92451 0.92257 0.91297 0.89162 0.83568 0.81715 0.81718 0.80843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.13 8.61 71.98 0.62 -5.51 16 2 C 0.03 1.68 1.83 -12.28 -0.02 1.66 16 3 H 0.04 2.19 7.40 -2.39 -0.02 2.17 16 4 C -0.53 -32.18 8.37 25.60 0.21 -31.96 16 5 H 0.05 3.00 6.75 -2.91 -0.02 2.98 16 6 C 0.02 1.12 5.30 84.65 0.45 1.57 16 7 N -0.91 -52.70 11.32 21.45 0.24 -52.45 16 8 Si 0.96 46.29 29.54 68.60 2.03 48.31 16 9 H -0.27 -12.95 7.11 99.48 0.71 -12.24 16 10 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 11 H -0.28 -13.61 7.11 99.48 0.71 -12.90 16 12 C 0.52 25.92 7.07 87.66 0.62 26.54 16 13 O -0.59 -33.55 14.79 -3.03 -0.04 -33.60 16 14 N -0.60 -23.43 2.69 -826.80 -2.23 -25.66 16 15 C 0.10 3.35 7.17 127.77 0.92 4.27 16 16 C 0.18 5.70 2.91 44.24 0.13 5.83 16 17 H 0.09 3.26 6.87 -2.38 -0.02 3.25 16 18 C -0.14 -3.52 9.15 71.98 0.66 -2.86 16 19 C 0.10 2.93 5.88 42.55 0.25 3.18 16 20 C -0.18 -3.94 9.76 22.36 0.22 -3.72 16 21 C -0.07 -1.25 10.18 22.47 0.23 -1.02 16 22 C -0.17 -2.84 10.11 22.36 0.23 -2.62 16 23 C 0.08 1.78 11.18 84.67 0.95 2.72 16 24 N -0.50 -14.00 7.24 -183.89 -1.33 -15.33 16 25 H 0.07 3.76 6.07 -2.39 -0.01 3.75 16 26 H 0.06 2.60 4.53 -2.39 -0.01 2.59 16 27 H 0.01 0.51 8.14 -2.38 -0.02 0.49 16 28 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 29 H 0.07 2.32 5.77 -2.39 -0.01 2.31 16 30 H 0.08 2.19 6.42 -2.39 -0.02 2.17 16 31 H 0.06 2.01 6.01 -2.39 -0.01 2.00 16 32 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.07 1.59 6.66 -2.38 -0.02 1.57 16 34 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.15 2.74 8.06 -2.91 -0.02 2.72 16 36 H 0.17 1.65 8.06 -2.91 -0.02 1.62 16 37 H 0.17 1.54 8.06 -2.91 -0.02 1.51 16 38 H 0.17 2.77 8.06 -2.91 -0.02 2.75 16 Total: -1.00 -73.89 305.88 5.18 -68.71 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: 1.06 Total: 11.94 kcal Atomic # 6 Polarization: -7.37 SS G_CDS: 5.45 Total: -1.92 kcal Atomic # 7 Polarization: -90.13 SS G_CDS: -3.32 Total: -93.44 kcal Atomic # 8 Polarization: -33.55 SS G_CDS: -0.04 Total: -33.60 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 2.03 Total: 48.31 kcal Total: -73.89 5.18 -68.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596972171.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.216 kcal (2) G-P(sol) polarization free energy of solvation -73.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds