Wall clock time and date at job start Mon Mar 30 2020 06:56:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.47085 * 2 1 4 4 C 1.50699 * 109.47341 * 240.00016 * 2 1 3 5 5 H 1.08000 * 120.00303 * 274.95294 * 4 2 1 6 6 C 1.37877 * 120.00058 * 94.95661 * 4 2 1 7 7 N 1.31514 * 119.99913 * 180.49819 * 6 4 2 8 8 Si 1.86803 * 120.00090 * 0.50019 * 6 4 2 9 9 H 1.48501 * 109.47261 * 89.39781 * 8 6 4 10 10 H 1.48500 * 109.47287 * 209.40181 * 8 6 4 11 11 H 1.48504 * 109.47097 * 329.40010 * 8 6 4 12 12 C 1.50700 * 109.46995 * 119.99985 * 2 1 3 13 13 O 1.21277 * 120.00019 * 120.00379 * 12 2 1 14 14 N 1.34771 * 119.99879 * 299.99747 * 12 2 1 15 15 C 1.46499 * 120.00232 * 0.02562 * 14 12 2 16 16 C 1.46507 * 119.99834 * 179.97438 * 14 12 2 17 17 H 1.08997 * 109.46939 * 354.52229 * 16 14 12 18 18 C 1.53003 * 109.47352 * 234.51614 * 16 14 12 19 19 C 1.50703 * 109.46626 * 114.52051 * 16 14 12 20 20 C 1.38675 * 120.41903 * 144.69653 * 19 16 14 21 21 C 1.38625 * 118.42092 * 179.97438 * 20 19 16 22 22 C 1.38225 * 119.16322 * 0.02562 * 21 20 19 23 23 N 1.31853 * 120.76155 * 359.97438 * 22 21 20 24 24 C 1.31884 * 121.72929 * 359.71523 * 23 22 21 25 25 H 1.09000 * 109.47672 * 307.20944 * 1 2 3 26 26 H 1.09004 * 109.47073 * 187.20649 * 1 2 3 27 27 H 1.09002 * 109.46740 * 67.20697 * 1 2 3 28 28 H 0.97007 * 119.99481 * 180.02562 * 7 6 4 29 29 H 1.09000 * 109.47131 * 92.25707 * 15 14 12 30 30 H 1.08998 * 109.47217 * 212.25395 * 15 14 12 31 31 H 1.08996 * 109.46949 * 332.25853 * 15 14 12 32 32 H 1.09003 * 109.46814 * 60.00218 * 18 16 14 33 33 H 1.08990 * 109.47052 * 180.02562 * 18 16 14 34 34 H 1.09005 * 109.47071 * 300.00543 * 18 16 14 35 35 H 1.08004 * 120.78398 * 359.97438 * 20 19 16 36 36 H 1.08006 * 120.41590 * 180.02562 * 21 20 19 37 37 H 1.07999 * 119.62042 * 179.97438 * 22 21 20 38 38 H 1.07997 * 119.61994 * 180.31168 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.1363 -1.7854 -1.2288 6 6 2.3594 0.0120 -2.3583 7 7 2.7885 -0.6088 -3.4354 8 14 2.1931 1.8726 -2.3566 9 1 3.4622 2.4826 -1.8849 10 1 1.8988 2.3446 -3.7335 11 1 1.0861 2.2698 -1.4500 12 6 2.0323 -0.7104 1.2305 13 8 2.7296 -1.6964 1.1192 14 7 1.7067 -0.2499 2.4545 15 6 0.8640 0.9409 2.5889 16 6 2.1946 -0.9409 3.6507 17 1 2.7174 -1.8510 3.3568 18 6 1.0105 -1.3008 4.5504 19 6 3.1398 -0.0386 4.4015 20 6 3.1780 -0.0592 5.7876 21 6 4.0636 0.7877 6.4358 22 6 4.8730 1.6189 5.6845 23 7 4.8096 1.6117 4.3675 24 6 3.9837 0.8153 3.7172 25 1 -0.3634 0.6214 0.8184 26 1 -0.3633 -1.0196 0.1289 27 1 -0.3633 0.3981 -0.9475 28 1 3.0190 -0.1004 -4.2288 29 1 -0.1810 0.6401 2.6628 30 1 1.1489 1.4881 3.4876 31 1 0.9972 1.5805 1.7165 32 1 0.3268 -1.9534 4.0074 33 1 1.3735 -1.8144 5.4405 34 1 0.4876 -0.3906 4.8443 35 1 2.5331 -0.7194 6.3486 36 1 4.1204 0.7978 7.5143 37 1 5.5653 2.2820 6.1819 38 1 3.9635 0.8339 2.6376 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596975778.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:01 Heat of formation + Delta-G solvation = 6.718891 kcal Electronic energy + Delta-G solvation = -20145.946121 eV Core-core repulsion = 17181.875413 eV Total energy + Delta-G solvation = -2964.070708 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.54181 -39.11246 -35.90205 -34.02478 -32.90641 -31.79488 -30.83412 -29.43925 -26.77892 -25.16434 -24.65978 -23.29772 -22.63274 -20.49321 -18.60792 -17.37047 -17.12682 -16.37731 -15.95605 -15.68613 -15.14630 -14.51415 -14.20423 -13.82003 -13.53162 -13.41710 -13.25748 -13.04853 -12.49999 -12.41771 -12.22181 -12.10726 -11.82009 -11.52433 -11.30318 -11.19079 -11.04473 -10.73943 -10.25452 -9.85597 -9.78671 -9.46589 -9.13019 -9.04384 -8.64368 -8.54607 -8.27080 -6.05628 -4.05273 1.07041 1.23279 3.24549 3.31183 3.34808 3.42803 3.52728 3.83214 4.38977 4.39888 4.72592 4.73708 4.92763 4.96084 5.15463 5.24793 5.28877 5.32432 5.44230 5.62954 5.65298 5.72628 5.77664 5.89340 5.92873 6.10969 6.13379 6.15592 6.19530 6.42686 6.52011 6.68337 6.77719 6.99057 7.18319 7.54256 7.96669 7.98918 8.52819 9.06241 9.09507 9.53600 11.07678 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.024896 B = 0.006063 C = 0.005541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.423419 B = 4617.261070 C = 5052.100350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.001 4.001 3 H 0.054 0.946 4 C -0.495 4.495 5 H 0.085 0.915 6 C 0.072 3.928 7 N -0.895 5.895 8 Si 0.868 3.132 9 H -0.275 1.275 10 H -0.286 1.286 11 H -0.263 1.263 12 C 0.521 3.479 13 O -0.524 6.524 14 N -0.626 5.626 15 C 0.084 3.916 16 C 0.176 3.824 17 H 0.114 0.886 18 C -0.157 4.157 19 C -0.140 4.140 20 C -0.074 4.074 21 C -0.177 4.177 22 C 0.089 3.911 23 N -0.484 5.484 24 C 0.119 3.881 25 H 0.037 0.963 26 H 0.046 0.954 27 H 0.056 0.944 28 H 0.264 0.736 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.078 0.922 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.059 0.941 35 H 0.136 0.864 36 H 0.132 0.868 37 H 0.152 0.848 38 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.542 4.797 20.122 20.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.023 4.023 3 H 0.072 0.928 4 C -0.533 4.533 5 H 0.103 0.897 6 C -0.130 4.130 7 N -0.533 5.533 8 Si 0.695 3.305 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.187 1.187 12 C 0.312 3.688 13 O -0.398 6.398 14 N -0.363 5.363 15 C -0.059 4.059 16 C 0.072 3.928 17 H 0.131 0.869 18 C -0.215 4.215 19 C -0.143 4.143 20 C -0.101 4.101 21 C -0.197 4.197 22 C -0.068 4.068 23 N -0.192 5.192 24 C -0.038 4.038 25 H 0.056 0.944 26 H 0.066 0.934 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.096 0.904 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.154 0.846 36 H 0.150 0.850 37 H 0.169 0.831 38 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -2.547 4.837 19.333 20.091 hybrid contribution -0.567 0.558 0.455 0.917 sum -3.114 5.395 19.788 20.746 Atomic orbital electron populations 1.22178 0.96842 1.00587 1.00499 1.19315 0.94095 0.96819 0.92065 0.92799 1.20734 1.42961 0.96189 0.93426 0.89672 1.25010 0.94527 0.97924 0.95504 1.69884 1.44472 1.35757 1.03140 0.87005 0.79108 0.86749 0.77650 1.20094 1.21168 1.18738 1.21913 0.78693 0.84471 0.83747 1.90582 1.36995 1.26339 1.85874 1.48231 1.52921 1.29816 1.05319 1.21803 0.94299 0.87570 1.02259 1.19704 0.93068 0.95046 0.85022 0.86867 1.22153 0.98025 1.01947 0.99346 1.21358 0.99135 0.99275 0.94512 1.21535 0.97371 0.97519 0.93640 1.22095 0.98088 0.98285 1.01199 1.22778 0.97185 0.96983 0.89884 1.67762 1.20135 1.21263 1.10014 1.22728 0.89868 0.90413 1.00807 0.94422 0.93440 0.92497 0.92560 0.92673 0.92564 0.90365 0.91501 0.91600 0.92162 0.84587 0.85004 0.83085 0.82788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 8.69 37.16 0.32 -2.48 16 2 C 0.00 -0.03 1.41 -92.93 -0.13 -0.16 16 3 H 0.05 1.21 4.67 -51.93 -0.24 0.97 16 4 C -0.50 -14.13 8.36 -34.44 -0.29 -14.42 16 5 H 0.09 2.77 7.61 -52.49 -0.40 2.37 16 6 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 7 N -0.89 -27.62 13.96 55.43 0.77 -26.85 16 8 Si 0.87 20.86 26.84 -169.99 -4.56 16.30 16 9 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.26 -5.75 6.79 56.52 0.38 -5.37 16 12 C 0.52 11.28 6.91 -10.99 -0.08 11.21 16 13 O -0.52 -13.41 15.10 5.56 0.08 -13.33 16 14 N -0.63 -10.26 1.92 -175.26 -0.34 -10.59 16 15 C 0.08 1.12 7.53 59.85 0.45 1.57 16 16 C 0.18 2.49 3.05 -69.08 -0.21 2.28 16 17 H 0.11 1.87 6.92 -51.93 -0.36 1.51 16 18 C -0.16 -1.65 8.27 37.16 0.31 -1.34 16 19 C -0.14 -1.87 4.82 -104.48 -0.50 -2.37 16 20 C -0.07 -0.78 9.24 -39.28 -0.36 -1.14 16 21 C -0.18 -1.72 10.11 -39.44 -0.40 -2.12 16 22 C 0.09 1.03 11.18 -17.55 -0.20 0.83 16 23 N -0.48 -7.32 10.36 -13.25 -0.14 -7.46 16 24 C 0.12 1.86 10.36 -17.55 -0.18 1.68 16 25 H 0.04 0.59 4.79 -51.93 -0.25 0.34 16 26 H 0.05 0.93 8.13 -51.93 -0.42 0.51 16 27 H 0.06 1.15 7.99 -51.93 -0.41 0.73 16 28 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 29 H 0.05 0.65 7.26 -51.93 -0.38 0.27 16 30 H 0.06 0.65 7.51 -51.93 -0.39 0.27 16 31 H 0.08 1.11 5.75 -51.93 -0.30 0.81 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.07 0.55 6.63 -51.93 -0.34 0.20 16 34 H 0.06 0.57 7.55 -51.93 -0.39 0.18 16 35 H 0.14 1.07 6.18 -52.48 -0.32 0.75 16 36 H 0.13 0.87 8.06 -52.48 -0.42 0.45 16 37 H 0.15 1.30 8.06 -52.49 -0.42 0.88 16 38 H 0.15 2.72 7.44 -52.49 -0.39 2.33 16 LS Contribution 305.57 15.07 4.60 4.60 Total: -1.00 -33.72 305.57 -5.96 -39.69 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -5.02 Total: 2.12 kcal Atomic # 6 Polarization: -3.12 SS G_CDS: -1.37 Total: -4.48 kcal Atomic # 7 Polarization: -45.20 SS G_CDS: 0.30 Total: -44.90 kcal Atomic # 8 Polarization: -13.41 SS G_CDS: 0.08 Total: -13.33 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -4.56 Total: 16.30 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -33.72 -5.96 -39.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596975778.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.404 kcal (2) G-P(sol) polarization free energy of solvation -33.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds