Wall clock time and date at job start Mon Mar 30 2020 06:56:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.47085 * 2 1 4 4 C 1.50699 * 109.47341 * 240.00016 * 2 1 3 5 5 H 1.08000 * 120.00303 * 274.95294 * 4 2 1 6 6 C 1.37877 * 120.00058 * 94.95661 * 4 2 1 7 7 N 1.31514 * 119.99913 * 180.49819 * 6 4 2 8 8 Si 1.86803 * 120.00090 * 0.50019 * 6 4 2 9 9 H 1.48501 * 109.47261 * 89.39781 * 8 6 4 10 10 H 1.48500 * 109.47287 * 209.40181 * 8 6 4 11 11 H 1.48504 * 109.47097 * 329.40010 * 8 6 4 12 12 C 1.50700 * 109.46995 * 119.99985 * 2 1 3 13 13 O 1.21277 * 120.00019 * 120.00379 * 12 2 1 14 14 N 1.34771 * 119.99879 * 299.99747 * 12 2 1 15 15 C 1.46499 * 120.00232 * 0.02562 * 14 12 2 16 16 C 1.46507 * 119.99834 * 179.97438 * 14 12 2 17 17 H 1.08997 * 109.46939 * 354.52229 * 16 14 12 18 18 C 1.53003 * 109.47352 * 234.51614 * 16 14 12 19 19 C 1.50703 * 109.46626 * 114.52051 * 16 14 12 20 20 C 1.38675 * 120.41903 * 144.69653 * 19 16 14 21 21 C 1.38625 * 118.42092 * 179.97438 * 20 19 16 22 22 C 1.38225 * 119.16322 * 0.02562 * 21 20 19 23 23 N 1.31853 * 120.76155 * 359.97438 * 22 21 20 24 24 C 1.31884 * 121.72929 * 359.71523 * 23 22 21 25 25 H 1.09000 * 109.47672 * 307.20944 * 1 2 3 26 26 H 1.09004 * 109.47073 * 187.20649 * 1 2 3 27 27 H 1.09002 * 109.46740 * 67.20697 * 1 2 3 28 28 H 0.97007 * 119.99481 * 180.02562 * 7 6 4 29 29 H 1.09000 * 109.47131 * 92.25707 * 15 14 12 30 30 H 1.08998 * 109.47217 * 212.25395 * 15 14 12 31 31 H 1.08996 * 109.46949 * 332.25853 * 15 14 12 32 32 H 1.09003 * 109.46814 * 60.00218 * 18 16 14 33 33 H 1.08990 * 109.47052 * 180.02562 * 18 16 14 34 34 H 1.09005 * 109.47071 * 300.00543 * 18 16 14 35 35 H 1.08004 * 120.78398 * 359.97438 * 20 19 16 36 36 H 1.08006 * 120.41590 * 180.02562 * 21 20 19 37 37 H 1.07999 * 119.62042 * 179.97438 * 22 21 20 38 38 H 1.07997 * 119.61994 * 180.31168 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.1363 -1.7854 -1.2288 6 6 2.3594 0.0120 -2.3583 7 7 2.7885 -0.6088 -3.4354 8 14 2.1931 1.8726 -2.3566 9 1 3.4622 2.4826 -1.8849 10 1 1.8988 2.3446 -3.7335 11 1 1.0861 2.2698 -1.4500 12 6 2.0323 -0.7104 1.2305 13 8 2.7296 -1.6964 1.1192 14 7 1.7067 -0.2499 2.4545 15 6 0.8640 0.9409 2.5889 16 6 2.1946 -0.9409 3.6507 17 1 2.7174 -1.8510 3.3568 18 6 1.0105 -1.3008 4.5504 19 6 3.1398 -0.0386 4.4015 20 6 3.1780 -0.0592 5.7876 21 6 4.0636 0.7877 6.4358 22 6 4.8730 1.6189 5.6845 23 7 4.8096 1.6117 4.3675 24 6 3.9837 0.8153 3.7172 25 1 -0.3634 0.6214 0.8184 26 1 -0.3633 -1.0196 0.1289 27 1 -0.3633 0.3981 -0.9475 28 1 3.0190 -0.1004 -4.2288 29 1 -0.1810 0.6401 2.6628 30 1 1.1489 1.4881 3.4876 31 1 0.9972 1.5805 1.7165 32 1 0.3268 -1.9534 4.0074 33 1 1.3735 -1.8144 5.4405 34 1 0.4876 -0.3906 4.8443 35 1 2.5331 -0.7194 6.3486 36 1 4.1204 0.7978 7.5143 37 1 5.5653 2.2820 6.1819 38 1 3.9635 0.8339 2.6376 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596975778.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:01 Heat of formation + Delta-G solvation = -16.844152 kcal Electronic energy + Delta-G solvation = -20146.967891 eV Core-core repulsion = 17181.875413 eV Total energy + Delta-G solvation = -2965.092478 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.66496 -40.51656 -37.27420 -35.85742 -34.34904 -33.19351 -32.22897 -30.43037 -28.04280 -27.09296 -25.79908 -24.28465 -24.06013 -21.80305 -20.09018 -19.19036 -18.25095 -17.65638 -17.52369 -16.92127 -16.48310 -16.07019 -15.55832 -14.98212 -14.82310 -14.73158 -14.46711 -14.34224 -14.22621 -13.69198 -13.45332 -13.16004 -13.05489 -12.94632 -12.77536 -12.70320 -12.49980 -12.17316 -12.03506 -11.73912 -11.19304 -10.78352 -10.76529 -10.47141 -10.39455 -9.93055 -9.59769 -8.28438 -6.34760 0.12710 0.34338 1.33380 1.36022 1.46445 1.84045 2.12171 2.33754 2.86456 3.07164 3.43639 3.70234 3.89724 3.99651 4.05690 4.12165 4.26295 4.36339 4.37834 4.39824 4.60378 4.66004 4.74195 4.80300 4.82563 4.87380 4.90940 4.98602 5.10732 5.18181 5.23796 5.32869 5.49255 5.58643 5.71366 5.80209 6.21586 6.50127 6.77641 7.02896 7.26394 7.44317 8.89751 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.024896 B = 0.006063 C = 0.005541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.423419 B = 4617.261070 C = 5052.100350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.005 4.005 3 H 0.066 0.934 4 C -0.505 4.505 5 H 0.021 0.979 6 C 0.006 3.994 7 N -0.953 5.953 8 Si 0.941 3.059 9 H -0.274 1.274 10 H -0.282 1.282 11 H -0.219 1.219 12 C 0.519 3.481 13 O -0.583 6.583 14 N -0.613 5.613 15 C 0.074 3.926 16 C 0.173 3.827 17 H 0.078 0.922 18 C -0.147 4.147 19 C -0.145 4.145 20 C -0.065 4.065 21 C -0.159 4.159 22 C 0.080 3.920 23 N -0.518 5.518 24 C 0.089 3.911 25 H 0.086 0.914 26 H 0.038 0.962 27 H 0.052 0.948 28 H 0.267 0.733 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.057 0.943 33 H 0.095 0.905 34 H 0.081 0.919 35 H 0.172 0.828 36 H 0.176 0.824 37 H 0.180 0.820 38 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.420 7.490 24.559 26.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.026 4.026 3 H 0.084 0.916 4 C -0.543 4.543 5 H 0.040 0.960 6 C -0.190 4.190 7 N -0.593 5.593 8 Si 0.763 3.237 9 H -0.200 1.200 10 H -0.208 1.208 11 H -0.141 1.141 12 C 0.309 3.691 13 O -0.462 6.462 14 N -0.346 5.346 15 C -0.068 4.068 16 C 0.069 3.931 17 H 0.096 0.904 18 C -0.205 4.205 19 C -0.148 4.148 20 C -0.091 4.091 21 C -0.178 4.178 22 C -0.077 4.077 23 N -0.227 5.227 24 C -0.067 4.067 25 H 0.105 0.895 26 H 0.057 0.943 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.102 0.898 30 H 0.098 0.902 31 H 0.091 0.909 32 H 0.076 0.924 33 H 0.113 0.887 34 H 0.100 0.900 35 H 0.190 0.810 36 H 0.194 0.806 37 H 0.197 0.803 38 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -4.476 7.555 23.834 25.400 hybrid contribution 0.110 -0.355 -0.772 0.857 sum -4.366 7.200 23.062 24.551 Atomic orbital electron populations 1.22059 0.93659 1.01242 1.02285 1.19274 0.96459 0.96518 0.90392 0.91637 1.20890 1.43267 0.93786 0.96382 0.96034 1.26045 0.93940 1.04392 0.94614 1.70076 1.46528 1.38403 1.04246 0.85847 0.80490 0.78692 0.78720 1.19980 1.20777 1.14087 1.21585 0.78324 0.83825 0.85357 1.90558 1.39756 1.28937 1.86968 1.48065 1.51977 1.30218 1.04385 1.22092 0.95135 0.86278 1.03273 1.19861 0.94830 0.93750 0.84666 0.90409 1.22121 0.96101 1.03028 0.99233 1.21203 0.98825 0.98909 0.95904 1.21928 0.97512 0.97530 0.92097 1.22558 0.95932 0.96082 1.03212 1.23374 0.97865 0.97683 0.88772 1.67665 1.20763 1.22100 1.12195 1.22319 0.92084 0.92826 0.99505 0.89522 0.94281 0.92891 0.92452 0.89844 0.90160 0.90899 0.92403 0.88671 0.90003 0.81043 0.80619 0.80329 0.86590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.07 8.69 71.98 0.63 -4.45 16 2 C 0.00 -0.22 1.41 -12.29 -0.02 -0.24 16 3 H 0.07 2.88 4.67 -2.38 -0.01 2.87 16 4 C -0.50 -30.62 8.36 25.60 0.21 -30.41 16 5 H 0.02 1.53 7.61 -2.91 -0.02 1.51 16 6 C 0.01 0.38 5.47 84.65 0.46 0.85 16 7 N -0.95 -62.23 13.96 21.45 0.30 -61.93 16 8 Si 0.94 43.42 26.84 68.60 1.84 45.26 16 9 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 10 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 11 H -0.22 -8.49 6.79 99.48 0.68 -7.81 16 12 C 0.52 23.37 6.91 87.66 0.61 23.97 16 13 O -0.58 -32.34 15.10 -3.02 -0.05 -32.39 16 14 N -0.61 -19.71 1.92 -826.80 -1.59 -21.30 16 15 C 0.07 1.72 7.53 127.77 0.96 2.68 16 16 C 0.17 4.74 3.05 44.25 0.14 4.87 16 17 H 0.08 2.70 6.92 -2.39 -0.02 2.68 16 18 C -0.15 -2.57 8.27 71.98 0.60 -1.97 16 19 C -0.15 -3.64 4.82 -19.77 -0.10 -3.73 16 20 C -0.06 -1.07 9.24 22.47 0.21 -0.86 16 21 C -0.16 -2.29 10.11 22.36 0.23 -2.06 16 22 C 0.08 1.61 11.18 84.69 0.95 2.55 16 23 N -0.52 -15.32 10.36 -195.85 -2.03 -17.35 16 24 C 0.09 2.80 10.36 84.67 0.88 3.68 16 25 H 0.09 2.39 4.79 -2.39 -0.01 2.38 16 26 H 0.04 1.51 8.13 -2.39 -0.02 1.49 16 27 H 0.05 2.03 7.99 -2.39 -0.02 2.01 16 28 H 0.27 16.14 8.31 -92.70 -0.77 15.37 16 29 H 0.08 1.53 7.26 -2.39 -0.02 1.51 16 30 H 0.08 1.55 7.51 -2.39 -0.02 1.53 16 31 H 0.07 1.81 5.75 -2.39 -0.01 1.80 16 32 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.09 1.12 6.63 -2.39 -0.02 1.11 16 34 H 0.08 1.11 7.55 -2.38 -0.02 1.09 16 35 H 0.17 1.61 6.18 -2.91 -0.02 1.59 16 36 H 0.18 1.06 8.06 -2.91 -0.02 1.04 16 37 H 0.18 2.41 8.06 -2.91 -0.02 2.39 16 38 H 0.12 4.41 7.44 -2.91 -0.02 4.39 16 Total: -1.00 -83.97 305.57 5.25 -78.71 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: 1.03 Total: 14.11 kcal Atomic # 6 Polarization: -10.86 SS G_CDS: 5.75 Total: -5.12 kcal Atomic # 7 Polarization: -97.26 SS G_CDS: -3.32 Total: -100.58 kcal Atomic # 8 Polarization: -32.34 SS G_CDS: -0.05 Total: -32.39 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 1.84 Total: 45.26 kcal Total: -83.97 5.25 -78.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596975778.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.869 kcal (2) G-P(sol) polarization free energy of solvation -83.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds