Wall clock time and date at job start Mon Mar 30 2020 06:56:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.47363 * 2 1 4 4 C 1.50697 * 109.47048 * 239.99318 * 2 1 3 5 5 H 1.07996 * 119.99936 * 239.99697 * 4 2 1 6 6 C 1.37877 * 119.99880 * 60.00829 * 4 2 1 7 7 N 1.31507 * 119.99969 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 119.99794 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47367 * 59.99413 * 8 6 4 10 10 H 1.48498 * 109.47213 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47100 * 299.99370 * 8 6 4 12 12 C 1.50704 * 109.46495 * 119.99530 * 2 1 3 13 13 O 1.21280 * 119.99865 * 101.24992 * 12 2 1 14 14 N 1.34777 * 120.00078 * 281.23880 * 12 2 1 15 15 C 1.46501 * 120.00183 * 356.67732 * 14 12 2 16 16 C 1.46500 * 119.99874 * 176.66908 * 14 12 2 17 17 H 1.08998 * 109.46952 * 5.78860 * 16 14 12 18 18 C 1.53004 * 109.46845 * 125.78389 * 16 14 12 19 19 C 1.50697 * 109.47399 * 245.78156 * 16 14 12 20 20 C 1.38673 * 120.42003 * 310.18559 * 19 16 14 21 21 C 1.38625 * 118.42206 * 180.27294 * 20 19 16 22 22 C 1.38240 * 119.15877 * 0.02562 * 21 20 19 23 23 N 1.31854 * 120.76130 * 359.97438 * 22 21 20 24 24 C 1.31882 * 121.72786 * 0.02562 * 23 22 21 25 25 H 1.08998 * 109.47592 * 171.73424 * 1 2 3 26 26 H 1.09003 * 109.47430 * 291.74055 * 1 2 3 27 27 H 1.09007 * 109.46782 * 51.73967 * 1 2 3 28 28 H 0.97004 * 120.00260 * 180.02562 * 7 6 4 29 29 H 1.08992 * 109.47053 * 206.18054 * 15 14 12 30 30 H 1.09007 * 109.46789 * 326.17924 * 15 14 12 31 31 H 1.08998 * 109.46943 * 86.17671 * 15 14 12 32 32 H 1.08998 * 109.46961 * 60.00476 * 18 16 14 33 33 H 1.09000 * 109.46996 * 179.97438 * 18 16 14 34 34 H 1.08997 * 109.47085 * 300.00424 * 18 16 14 35 35 H 1.07998 * 120.79126 * 0.26767 * 20 19 16 36 36 H 1.07995 * 120.42412 * 179.97438 * 21 20 19 37 37 H 1.07998 * 119.61322 * 179.97438 * 22 21 20 38 38 H 1.07999 * 119.61715 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9430 0.8295 -2.6034 8 14 2.3226 -1.1199 -4.0077 9 1 1.8281 -2.5201 -4.0079 10 1 1.8282 -0.4196 -5.2203 11 1 3.8076 -1.1193 -4.0075 12 6 2.0322 -0.7104 1.2306 13 8 2.4274 -1.8542 1.1516 14 7 2.0423 -0.0744 2.4189 15 6 1.6339 1.3301 2.5015 16 6 2.4615 -0.7877 3.6279 17 1 2.8235 -1.7796 3.3573 18 6 3.5816 -0.0068 4.3182 19 6 1.2891 -0.9192 4.5656 20 6 0.5203 0.1889 4.8881 21 6 -0.5450 0.0219 5.7592 22 6 -0.8033 -1.2347 6.2743 23 7 -0.0506 -2.2661 5.9454 24 6 0.9705 -2.1443 5.1198 25 1 -0.3634 -1.0169 -0.1477 26 1 -0.3634 0.3807 0.9546 27 1 -0.3633 0.6364 -0.8070 28 1 0.7084 1.1607 -3.4845 29 1 2.1175 1.7992 3.3582 30 1 1.9285 1.8484 1.5890 31 1 0.5517 1.3875 2.6187 32 1 3.2196 0.9851 4.5887 33 1 3.8932 -0.5373 5.2179 34 1 4.4295 0.0884 3.6399 35 1 0.7460 1.1590 4.4705 36 1 -1.1648 0.8629 6.0328 37 1 -1.6311 -1.3731 6.9540 38 1 1.5647 -3.0120 4.8740 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596975779.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:03 Heat of formation + Delta-G solvation = 2.167105 kcal Electronic energy + Delta-G solvation = -20032.134582 eV Core-core repulsion = 17067.866494 eV Total energy + Delta-G solvation = -2964.268088 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.47809 -38.98898 -35.92672 -33.86344 -32.46121 -32.03519 -30.34303 -29.30701 -26.82497 -25.16495 -24.24183 -23.44969 -22.74585 -20.60620 -18.54499 -17.16499 -16.62899 -16.30517 -15.91384 -15.45651 -14.97865 -14.66087 -14.33072 -13.85175 -13.58944 -13.24996 -13.08555 -12.84631 -12.47905 -12.26628 -12.15347 -11.79411 -11.66324 -11.37229 -10.99848 -10.91031 -10.72488 -10.66211 -10.26305 -9.99409 -9.79207 -9.53769 -9.04189 -8.96885 -8.57104 -8.31664 -8.15106 -6.04428 -4.06908 1.09287 1.28361 3.35592 3.38179 3.42464 3.52828 3.64617 3.89274 4.42099 4.46087 4.71534 4.82335 4.97958 5.02387 5.21895 5.27971 5.29479 5.37002 5.50247 5.69424 5.73226 5.80104 5.80853 5.98146 6.07969 6.11513 6.17913 6.35174 6.67231 6.69947 6.83277 6.95230 7.06900 7.44480 7.73305 7.93361 7.96109 8.04827 8.35366 8.99309 9.16678 9.57983 11.03676 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.031038 B = 0.005056 C = 0.004972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.907555 B = 5536.429050 C = 5629.814753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.033 3.967 3 H 0.050 0.950 4 C -0.503 4.503 5 H 0.070 0.930 6 C 0.060 3.940 7 N -0.896 5.896 8 Si 0.900 3.100 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.524 3.476 13 O -0.544 6.544 14 N -0.623 5.623 15 C 0.076 3.924 16 C 0.175 3.825 17 H 0.109 0.891 18 C -0.155 4.155 19 C -0.134 4.134 20 C -0.073 4.073 21 C -0.174 4.174 22 C 0.089 3.911 23 N -0.486 5.486 24 C 0.108 3.892 25 H 0.034 0.966 26 H 0.011 0.989 27 H 0.088 0.912 28 H 0.261 0.739 29 H 0.064 0.936 30 H 0.081 0.919 31 H 0.052 0.948 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.140 0.860 36 H 0.133 0.867 37 H 0.152 0.848 38 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.731 3.425 16.065 16.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.012 3.988 3 H 0.067 0.933 4 C -0.541 4.541 5 H 0.088 0.912 6 C -0.141 4.141 7 N -0.535 5.535 8 Si 0.728 3.272 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.202 1.202 12 C 0.316 3.684 13 O -0.419 6.419 14 N -0.359 5.359 15 C -0.067 4.067 16 C 0.070 3.930 17 H 0.127 0.873 18 C -0.213 4.213 19 C -0.138 4.138 20 C -0.099 4.099 21 C -0.194 4.194 22 C -0.068 4.068 23 N -0.194 5.194 24 C -0.049 4.049 25 H 0.053 0.947 26 H 0.030 0.970 27 H 0.107 0.893 28 H 0.071 0.929 29 H 0.082 0.918 30 H 0.100 0.900 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.158 0.842 36 H 0.151 0.849 37 H 0.169 0.831 38 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -0.784 2.091 16.199 16.352 hybrid contribution 0.287 0.569 -1.141 1.307 sum -0.496 2.660 15.058 15.299 Atomic orbital electron populations 1.21669 0.96177 1.01225 0.99237 1.18889 0.94180 0.96625 0.89079 0.93277 1.21070 1.31314 1.12627 0.89099 0.91156 1.24927 0.95056 0.95025 0.99052 1.69874 1.36978 1.23041 1.23653 0.86517 0.79220 0.79820 0.81656 1.20159 1.21351 1.20216 1.22097 0.75341 0.86833 0.84149 1.90516 1.47024 1.19013 1.85345 1.48161 1.68827 1.11943 1.06945 1.21919 0.99451 0.82363 1.02981 1.19739 0.90514 0.99004 0.83744 0.87349 1.22121 0.98230 1.00278 1.00634 1.21318 0.98985 0.94685 0.98765 1.21814 0.93720 0.99568 0.94769 1.22132 0.98987 0.99123 0.99166 1.22728 0.97754 0.88562 0.97754 1.67688 1.05111 1.33424 1.13189 1.22689 0.93518 0.96405 0.92337 0.94693 0.97025 0.89311 0.92909 0.91775 0.90003 0.92992 0.92278 0.91694 0.91424 0.84197 0.84943 0.83080 0.82794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.95 8.77 37.16 0.33 -2.62 16 2 C 0.03 0.82 1.93 -92.92 -0.18 0.64 16 3 H 0.05 1.22 6.34 -51.93 -0.33 0.89 16 4 C -0.50 -14.22 8.34 -34.44 -0.29 -14.51 16 5 H 0.07 2.10 6.91 -52.49 -0.36 1.74 16 6 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 7 N -0.90 -24.98 11.42 55.43 0.63 -24.34 16 8 Si 0.90 21.79 29.54 -169.99 -5.02 16.77 16 9 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 10 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 C 0.52 11.93 6.83 -10.98 -0.07 11.86 16 13 O -0.54 -14.09 15.00 5.56 0.08 -14.01 16 14 N -0.62 -10.83 2.74 -175.26 -0.48 -11.31 16 15 C 0.08 1.06 7.37 59.85 0.44 1.50 16 16 C 0.17 2.59 2.96 -69.08 -0.20 2.38 16 17 H 0.11 1.81 6.70 -51.93 -0.35 1.46 16 18 C -0.15 -1.79 8.97 37.16 0.33 -1.46 16 19 C -0.13 -1.85 4.96 -104.48 -0.52 -2.37 16 20 C -0.07 -0.88 8.62 -39.28 -0.34 -1.22 16 21 C -0.17 -1.88 10.11 -39.44 -0.40 -2.28 16 22 C 0.09 1.04 11.18 -17.54 -0.20 0.85 16 23 N -0.49 -6.89 10.36 -13.25 -0.14 -7.03 16 24 C 0.11 1.52 10.83 -17.55 -0.19 1.33 16 25 H 0.03 0.86 8.12 -51.93 -0.42 0.44 16 26 H 0.01 0.22 6.83 -51.93 -0.35 -0.13 16 27 H 0.09 2.24 6.34 -51.93 -0.33 1.91 16 28 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 29 H 0.06 0.68 5.35 -51.93 -0.28 0.40 16 30 H 0.08 1.24 6.18 -51.92 -0.32 0.92 16 31 H 0.05 0.70 6.38 -51.93 -0.33 0.36 16 32 H 0.06 0.60 6.33 -51.93 -0.33 0.27 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.14 1.47 4.69 -52.49 -0.25 1.23 16 36 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 37 H 0.15 1.32 8.06 -52.49 -0.42 0.89 16 38 H 0.15 1.99 7.98 -52.49 -0.42 1.57 16 LS Contribution 305.42 15.07 4.60 4.60 Total: -1.00 -32.17 305.42 -6.60 -38.77 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -4.90 Total: 0.87 kcal Atomic # 6 Polarization: -2.93 SS G_CDS: -1.38 Total: -4.32 kcal Atomic # 7 Polarization: -42.70 SS G_CDS: 0.01 Total: -42.68 kcal Atomic # 8 Polarization: -14.09 SS G_CDS: 0.08 Total: -14.01 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -32.17 -6.60 -38.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596975779.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.934 kcal (2) G-P(sol) polarization free energy of solvation -32.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds