Wall clock time and date at job start Mon Mar 30 2020 06:56:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.47363 * 2 1 4 4 C 1.50697 * 109.47048 * 239.99318 * 2 1 3 5 5 H 1.07996 * 119.99936 * 239.99697 * 4 2 1 6 6 C 1.37877 * 119.99880 * 60.00829 * 4 2 1 7 7 N 1.31507 * 119.99969 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 119.99794 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47367 * 59.99413 * 8 6 4 10 10 H 1.48498 * 109.47213 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47100 * 299.99370 * 8 6 4 12 12 C 1.50704 * 109.46495 * 119.99530 * 2 1 3 13 13 O 1.21280 * 119.99865 * 101.24992 * 12 2 1 14 14 N 1.34777 * 120.00078 * 281.23880 * 12 2 1 15 15 C 1.46501 * 120.00183 * 356.67732 * 14 12 2 16 16 C 1.46500 * 119.99874 * 176.66908 * 14 12 2 17 17 H 1.08998 * 109.46952 * 5.78860 * 16 14 12 18 18 C 1.53004 * 109.46845 * 125.78389 * 16 14 12 19 19 C 1.50697 * 109.47399 * 245.78156 * 16 14 12 20 20 C 1.38673 * 120.42003 * 310.18559 * 19 16 14 21 21 C 1.38625 * 118.42206 * 180.27294 * 20 19 16 22 22 C 1.38240 * 119.15877 * 0.02562 * 21 20 19 23 23 N 1.31854 * 120.76130 * 359.97438 * 22 21 20 24 24 C 1.31882 * 121.72786 * 0.02562 * 23 22 21 25 25 H 1.08998 * 109.47592 * 171.73424 * 1 2 3 26 26 H 1.09003 * 109.47430 * 291.74055 * 1 2 3 27 27 H 1.09007 * 109.46782 * 51.73967 * 1 2 3 28 28 H 0.97004 * 120.00260 * 180.02562 * 7 6 4 29 29 H 1.08992 * 109.47053 * 206.18054 * 15 14 12 30 30 H 1.09007 * 109.46789 * 326.17924 * 15 14 12 31 31 H 1.08998 * 109.46943 * 86.17671 * 15 14 12 32 32 H 1.08998 * 109.46961 * 60.00476 * 18 16 14 33 33 H 1.09000 * 109.46996 * 179.97438 * 18 16 14 34 34 H 1.08997 * 109.47085 * 300.00424 * 18 16 14 35 35 H 1.07998 * 120.79126 * 0.26767 * 20 19 16 36 36 H 1.07995 * 120.42412 * 179.97438 * 21 20 19 37 37 H 1.07998 * 119.61322 * 179.97438 * 22 21 20 38 38 H 1.07999 * 119.61715 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9430 0.8295 -2.6034 8 14 2.3226 -1.1199 -4.0077 9 1 1.8281 -2.5201 -4.0079 10 1 1.8282 -0.4196 -5.2203 11 1 3.8076 -1.1193 -4.0075 12 6 2.0322 -0.7104 1.2306 13 8 2.4274 -1.8542 1.1516 14 7 2.0423 -0.0744 2.4189 15 6 1.6339 1.3301 2.5015 16 6 2.4615 -0.7877 3.6279 17 1 2.8235 -1.7796 3.3573 18 6 3.5816 -0.0068 4.3182 19 6 1.2891 -0.9192 4.5656 20 6 0.5203 0.1889 4.8881 21 6 -0.5450 0.0219 5.7592 22 6 -0.8033 -1.2347 6.2743 23 7 -0.0506 -2.2661 5.9454 24 6 0.9705 -2.1443 5.1198 25 1 -0.3634 -1.0169 -0.1477 26 1 -0.3634 0.3807 0.9546 27 1 -0.3633 0.6364 -0.8070 28 1 0.7084 1.1607 -3.4845 29 1 2.1175 1.7992 3.3582 30 1 1.9285 1.8484 1.5890 31 1 0.5517 1.3875 2.6187 32 1 3.2196 0.9851 4.5887 33 1 3.8932 -0.5373 5.2179 34 1 4.4295 0.0884 3.6399 35 1 0.7460 1.1590 4.4705 36 1 -1.1648 0.8629 6.0328 37 1 -1.6311 -1.3731 6.9540 38 1 1.5647 -3.0120 4.8740 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596975779.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:02 Heat of formation + Delta-G solvation = -18.132742 kcal Electronic energy + Delta-G solvation = -20033.014850 eV Core-core repulsion = 17067.866494 eV Total energy + Delta-G solvation = -2965.148355 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.60688 -40.45027 -37.35179 -35.85134 -33.86070 -33.00175 -32.09822 -30.40908 -28.05617 -27.25077 -25.51062 -24.44507 -24.19895 -21.97599 -20.05664 -18.49156 -18.07993 -17.81699 -17.34139 -16.83221 -16.52867 -16.11839 -15.70230 -14.97079 -14.72666 -14.67466 -14.43204 -14.37524 -13.95484 -13.52351 -13.27707 -13.19431 -12.96207 -12.84634 -12.73967 -12.63782 -12.58287 -12.21447 -12.04722 -11.91956 -11.05279 -10.77223 -10.62070 -10.52514 -10.23532 -9.92138 -9.55591 -8.16324 -6.25590 0.13905 0.34617 1.40297 1.41869 1.50189 1.88915 2.15899 2.45487 2.89482 3.13848 3.47383 3.68542 3.90732 4.03746 4.05565 4.17981 4.26252 4.29451 4.42086 4.60688 4.62467 4.68452 4.79739 4.85962 4.87866 4.95062 4.96744 5.04579 5.18267 5.22847 5.30833 5.46748 5.69210 5.73521 5.78717 5.90242 6.16204 6.55770 6.80638 7.01249 7.38326 7.48479 8.89911 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.031038 B = 0.005056 C = 0.004972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.907555 B = 5536.429050 C = 5629.814753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.030 3.970 3 H 0.049 0.951 4 C -0.532 4.532 5 H 0.043 0.957 6 C 0.023 3.977 7 N -0.909 5.909 8 Si 0.953 3.047 9 H -0.281 1.281 10 H -0.273 1.273 11 H -0.274 1.274 12 C 0.520 3.480 13 O -0.589 6.589 14 N -0.612 5.612 15 C 0.067 3.933 16 C 0.174 3.826 17 H 0.079 0.921 18 C -0.146 4.146 19 C -0.146 4.146 20 C -0.077 4.077 21 C -0.164 4.164 22 C 0.082 3.918 23 N -0.511 5.511 24 C 0.087 3.913 25 H 0.012 0.988 26 H 0.044 0.956 27 H 0.072 0.928 28 H 0.265 0.735 29 H 0.106 0.894 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.057 0.943 35 H 0.160 0.840 36 H 0.170 0.830 37 H 0.181 0.819 38 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.522 5.353 17.592 18.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.009 3.991 3 H 0.067 0.933 4 C -0.570 4.570 5 H 0.061 0.939 6 C -0.176 4.176 7 N -0.548 5.548 8 Si 0.779 3.221 9 H -0.206 1.206 10 H -0.198 1.198 11 H -0.199 1.199 12 C 0.311 3.689 13 O -0.469 6.469 14 N -0.345 5.345 15 C -0.074 4.074 16 C 0.070 3.930 17 H 0.097 0.903 18 C -0.203 4.203 19 C -0.149 4.149 20 C -0.102 4.102 21 C -0.184 4.184 22 C -0.075 4.075 23 N -0.220 5.220 24 C -0.069 4.069 25 H 0.031 0.969 26 H 0.063 0.937 27 H 0.091 0.909 28 H 0.075 0.925 29 H 0.124 0.876 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.076 0.924 35 H 0.177 0.823 36 H 0.188 0.812 37 H 0.198 0.802 38 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -1.579 4.064 17.766 18.293 hybrid contribution 0.478 0.008 -1.512 1.586 sum -1.101 4.072 16.253 16.792 Atomic orbital electron populations 1.21460 0.95429 0.99522 1.00354 1.18800 0.94752 0.96259 0.89252 0.93306 1.21225 1.31965 1.12512 0.91320 0.93866 1.25542 0.95141 0.95698 1.01239 1.69936 1.36986 1.23427 1.24404 0.85696 0.78812 0.78610 0.79029 1.20629 1.19763 1.19918 1.21703 0.75468 0.86231 0.85455 1.90489 1.49286 1.20792 1.86316 1.48051 1.67150 1.13158 1.06156 1.22202 1.00757 0.80159 1.04316 1.19841 0.92241 0.97943 0.83019 0.90297 1.22068 0.96535 1.01126 1.00620 1.21161 0.99173 0.95385 0.99143 1.22090 0.93672 0.99599 0.94885 1.22527 0.98399 0.99817 0.97609 1.23333 0.97854 0.88554 0.97746 1.67691 1.05608 1.34956 1.13768 1.22719 0.94167 0.96744 0.93306 0.96917 0.93699 0.90933 0.92534 0.87587 0.91195 0.91630 0.89960 0.89995 0.92355 0.82271 0.81235 0.80203 0.83350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.18 8.77 71.98 0.63 -4.55 16 2 C 0.03 1.53 1.93 -12.29 -0.02 1.50 16 3 H 0.05 2.44 6.34 -2.39 -0.02 2.43 16 4 C -0.53 -30.99 8.34 25.60 0.21 -30.78 16 5 H 0.04 2.70 6.91 -2.91 -0.02 2.68 16 6 C 0.02 1.31 5.30 84.66 0.45 1.76 16 7 N -0.91 -50.61 11.42 21.45 0.24 -50.37 16 8 Si 0.95 45.02 29.54 68.60 2.03 47.05 16 9 H -0.28 -13.38 7.11 99.48 0.71 -12.68 16 10 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 11 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 12 C 0.52 24.21 6.83 87.66 0.60 24.80 16 13 O -0.59 -32.01 15.00 -3.03 -0.05 -32.06 16 14 N -0.61 -20.78 2.74 -826.79 -2.27 -23.05 16 15 C 0.07 1.69 7.37 127.77 0.94 2.63 16 16 C 0.17 5.04 2.96 44.25 0.13 5.17 16 17 H 0.08 2.77 6.70 -2.39 -0.02 2.75 16 18 C -0.15 -3.08 8.97 71.98 0.65 -2.44 16 19 C -0.15 -3.81 4.96 -19.77 -0.10 -3.90 16 20 C -0.08 -1.58 8.62 22.47 0.19 -1.39 16 21 C -0.16 -2.87 10.11 22.36 0.23 -2.64 16 22 C 0.08 1.69 11.18 84.69 0.95 2.64 16 23 N -0.51 -13.98 10.36 -195.84 -2.03 -16.00 16 24 C 0.09 2.45 10.83 84.67 0.92 3.37 16 25 H 0.01 0.60 8.12 -2.39 -0.02 0.58 16 26 H 0.04 1.76 6.83 -2.39 -0.02 1.74 16 27 H 0.07 3.66 6.34 -2.38 -0.02 3.64 16 28 H 0.27 14.02 8.31 -92.71 -0.77 13.25 16 29 H 0.11 1.78 5.35 -2.39 -0.01 1.77 16 30 H 0.07 1.98 6.18 -2.38 -0.01 1.96 16 31 H 0.07 1.51 6.38 -2.39 -0.02 1.50 16 32 H 0.08 1.35 6.33 -2.39 -0.02 1.33 16 33 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.16 2.58 4.69 -2.91 -0.01 2.56 16 36 H 0.17 1.69 8.06 -2.91 -0.02 1.67 16 37 H 0.18 2.49 8.06 -2.91 -0.02 2.47 16 38 H 0.15 4.08 7.98 -2.91 -0.02 4.06 16 Total: -1.00 -71.99 305.42 4.77 -67.22 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: 1.07 Total: 11.03 kcal Atomic # 6 Polarization: -9.60 SS G_CDS: 5.77 Total: -3.83 kcal Atomic # 7 Polarization: -85.36 SS G_CDS: -4.05 Total: -89.42 kcal Atomic # 8 Polarization: -32.01 SS G_CDS: -0.05 Total: -32.06 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -71.99 4.77 -67.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596975779.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.086 kcal (2) G-P(sol) polarization free energy of solvation -71.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds