Wall clock time and date at job start Mon Mar 30 2020 06:56:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47614 * 2 1 4 4 C 1.50705 * 109.46871 * 239.99854 * 2 1 3 5 5 C 1.38672 * 120.41359 * 292.35545 * 4 2 1 6 6 C 1.38631 * 118.41343 * 180.02562 * 5 4 2 7 7 C 1.38229 * 119.16412 * 359.97438 * 6 5 4 8 8 N 1.31845 * 120.76412 * 0.02562 * 7 6 5 9 9 C 1.31890 * 121.72628 * 359.70046 * 8 7 6 10 10 N 1.46504 * 109.46968 * 120.00039 * 2 1 3 11 11 C 1.46496 * 119.99851 * 54.14888 * 10 2 1 12 12 C 1.34772 * 119.99765 * 234.14744 * 10 2 1 13 13 O 1.21288 * 120.00089 * 0.02562 * 12 10 2 14 14 C 1.50701 * 120.00148 * 180.02562 * 12 10 2 15 15 H 1.09004 * 109.46786 * 299.99799 * 14 12 10 16 16 C 1.53000 * 109.47237 * 59.99683 * 14 12 10 17 17 C 1.50695 * 109.47267 * 180.02562 * 14 12 10 18 18 H 1.07997 * 120.00349 * 359.97438 * 17 14 12 19 19 C 1.37879 * 119.99827 * 179.97438 * 17 14 12 20 20 N 1.31514 * 120.00244 * 0.02562 * 19 17 14 21 21 Si 1.86802 * 120.00104 * 179.97438 * 19 17 14 22 22 H 1.48506 * 109.46970 * 90.00153 * 21 19 17 23 23 H 1.48499 * 109.47368 * 210.00263 * 21 19 17 24 24 H 1.48506 * 109.46979 * 330.00560 * 21 19 17 25 25 H 1.08993 * 109.47768 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46842 * 300.00404 * 1 2 3 27 27 H 1.08999 * 109.47037 * 59.99896 * 1 2 3 28 28 H 1.07995 * 120.79430 * 359.97438 * 5 4 2 29 29 H 1.08007 * 120.41970 * 180.02562 * 6 5 4 30 30 H 1.08001 * 119.61748 * 179.97438 * 7 6 5 31 31 H 1.08000 * 119.62193 * 180.31750 * 9 8 7 32 32 H 1.08998 * 109.47057 * 88.46545 * 11 10 2 33 33 H 1.09004 * 109.46815 * 208.45749 * 11 10 2 34 34 H 1.08997 * 109.47128 * 328.45549 * 11 10 2 35 35 H 1.09004 * 109.46403 * 60.00225 * 16 14 12 36 36 H 1.08999 * 109.47432 * 180.02562 * 16 14 12 37 37 H 1.09001 * 109.47020 * 300.00704 * 16 14 12 38 38 H 0.96995 * 120.00070 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 6 1.8374 -2.0751 -1.3820 6 6 2.3170 -2.6865 -2.5300 7 6 2.9683 -1.9210 -3.4790 8 7 3.1356 -0.6253 -3.3014 9 6 2.6881 -0.0094 -2.2244 10 7 2.0183 -0.6906 1.1962 11 6 1.5618 -2.0503 1.4946 12 6 2.8874 -0.0751 2.0221 13 8 3.2649 1.0508 1.7752 14 6 3.3902 -0.7856 3.2523 15 1 2.5476 -1.0369 3.8965 16 6 4.1168 -2.0674 2.8398 17 6 4.3416 0.1139 3.9984 18 1 4.5607 1.1012 3.6195 19 6 4.9324 -0.3237 5.1648 20 7 4.6661 -1.5261 5.6260 21 14 6.1123 0.7910 6.0893 22 1 5.3549 1.6074 7.0718 23 1 7.1178 -0.0361 6.8035 24 1 6.8022 1.6880 5.1276 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.3250 -2.6479 -0.6233 29 1 2.1827 -3.7474 -2.6814 30 1 3.3452 -2.3899 -4.3759 31 1 2.8394 1.0544 -2.1162 32 1 2.2181 -2.7696 1.0047 33 1 1.5847 -2.2130 2.5722 34 1 0.5432 -2.1800 1.1291 35 1 4.9593 -1.8159 2.1955 36 1 4.4801 -2.5815 3.7295 37 1 3.4283 -2.7177 2.3003 38 1 5.0814 -1.8338 6.4468 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596975781.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:07 Heat of formation + Delta-G solvation = 6.059939 kcal Electronic energy + Delta-G solvation = -20074.521543 eV Core-core repulsion = 17110.422261 eV Total energy + Delta-G solvation = -2964.099282 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.48014 -39.02136 -35.90265 -33.98215 -32.50244 -32.02644 -30.33489 -29.22833 -26.89554 -25.11544 -24.26366 -23.42751 -22.66557 -20.62483 -18.64078 -17.15296 -16.57799 -16.27102 -15.96242 -15.42328 -14.98773 -14.62428 -14.33160 -13.83921 -13.57299 -13.24050 -13.17193 -13.07288 -12.44666 -12.26523 -12.11588 -11.80975 -11.70910 -11.19012 -11.01113 -10.92314 -10.71804 -10.45961 -10.26214 -9.96856 -9.78863 -9.52470 -9.03690 -8.96215 -8.58444 -8.30006 -8.15221 -6.03478 -4.06308 1.10025 1.28866 3.33701 3.39317 3.45054 3.53625 3.64673 3.90601 4.42812 4.46925 4.71471 4.82191 4.98369 5.02447 5.22790 5.28243 5.30178 5.37516 5.50626 5.70182 5.73659 5.79425 5.80577 5.98659 6.08317 6.11392 6.17309 6.35889 6.63505 6.70612 6.83135 6.91045 7.07889 7.45595 7.73375 7.94399 7.97103 8.08586 8.36447 9.02142 9.16789 9.59105 11.04129 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.028730 B = 0.005138 C = 0.005114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.365779 B = 5448.401435 C = 5474.049605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.175 3.825 3 H 0.108 0.892 4 C -0.134 4.134 5 C -0.071 4.071 6 C -0.175 4.175 7 C 0.090 3.910 8 N -0.486 5.486 9 C 0.109 3.891 10 N -0.622 5.622 11 C 0.076 3.924 12 C 0.523 3.477 13 O -0.543 6.543 14 C 0.033 3.967 15 H 0.052 0.948 16 C -0.142 4.142 17 C -0.500 4.500 18 H 0.073 0.927 19 C 0.058 3.942 20 N -0.897 5.897 21 Si 0.899 3.101 22 H -0.280 1.280 23 H -0.287 1.287 24 H -0.273 1.273 25 H 0.059 0.941 26 H 0.066 0.934 27 H 0.064 0.936 28 H 0.139 0.861 29 H 0.133 0.867 30 H 0.152 0.848 31 H 0.155 0.845 32 H 0.053 0.947 33 H 0.085 0.915 34 H 0.060 0.940 35 H 0.028 0.972 36 H 0.092 0.908 37 H 0.024 0.976 38 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.126 -4.755 -13.063 16.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.070 3.930 3 H 0.126 0.874 4 C -0.138 4.138 5 C -0.097 4.097 6 C -0.195 4.195 7 C -0.068 4.068 8 N -0.194 5.194 9 C -0.048 4.048 10 N -0.358 5.358 11 C -0.066 4.066 12 C 0.315 3.685 13 O -0.418 6.418 14 C 0.012 3.988 15 H 0.070 0.930 16 C -0.200 4.200 17 C -0.539 4.539 18 H 0.092 0.908 19 C -0.142 4.142 20 N -0.536 5.536 21 Si 0.727 3.273 22 H -0.206 1.206 23 H -0.213 1.213 24 H -0.198 1.198 25 H 0.077 0.923 26 H 0.085 0.915 27 H 0.083 0.917 28 H 0.157 0.843 29 H 0.150 0.850 30 H 0.169 0.831 31 H 0.172 0.828 32 H 0.072 0.928 33 H 0.103 0.897 34 H 0.078 0.922 35 H 0.047 0.953 36 H 0.111 0.889 37 H 0.043 0.957 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -8.412 -3.761 -13.659 16.477 hybrid contribution 0.219 -0.216 1.152 1.193 sum -8.193 -3.977 -12.507 15.471 Atomic orbital electron populations 1.22118 0.94315 1.02295 1.02559 1.19739 0.93773 0.97603 0.81866 0.87374 1.21308 0.99697 0.95207 0.97545 1.21752 0.96803 0.94330 0.96831 1.22126 1.00645 1.01312 0.95370 1.22723 0.95590 0.89820 0.98627 1.67689 1.17968 1.11120 1.22646 1.22703 0.92894 1.00424 0.88818 1.48145 1.47381 1.16203 1.24066 1.22034 0.98221 0.83485 1.02907 1.22117 0.75603 0.86250 0.84576 1.90518 1.57057 1.19785 1.74437 1.18838 0.97048 0.94202 0.88685 0.93006 1.21970 0.98706 0.97471 1.01875 1.21151 1.24981 1.01183 1.06570 0.90844 1.24938 0.96820 0.95262 0.97173 1.69865 1.44404 1.17332 1.22048 0.86461 0.80623 0.80472 0.79723 1.20649 1.21302 1.19755 0.92250 0.91481 0.91678 0.84346 0.84952 0.83083 0.82782 0.92826 0.89685 0.92193 0.95316 0.88939 0.95748 0.92989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 8.93 37.16 0.33 -1.44 16 2 C 0.17 2.58 2.96 -69.08 -0.20 2.38 16 3 H 0.11 1.80 6.69 -51.93 -0.35 1.45 16 4 C -0.13 -1.86 4.96 -104.48 -0.52 -2.38 16 5 C -0.07 -0.86 8.40 -39.28 -0.33 -1.19 16 6 C -0.17 -1.89 10.11 -39.44 -0.40 -2.29 16 7 C 0.09 1.06 11.18 -17.55 -0.20 0.86 16 8 N -0.49 -6.98 10.36 -13.25 -0.14 -7.12 16 9 C 0.11 1.56 10.83 -17.55 -0.19 1.37 16 10 N -0.62 -10.78 2.75 -175.26 -0.48 -11.26 16 11 C 0.08 1.07 6.67 59.84 0.40 1.46 16 12 C 0.52 11.90 7.07 -10.99 -0.08 11.82 16 13 O -0.54 -14.07 14.80 5.55 0.08 -13.98 16 14 C 0.03 0.82 1.83 -92.93 -0.17 0.65 16 15 H 0.05 1.32 7.40 -51.93 -0.38 0.93 16 16 C -0.14 -3.26 8.59 37.16 0.32 -2.94 16 17 C -0.50 -14.23 8.37 -34.44 -0.29 -14.51 16 18 H 0.07 2.21 6.75 -52.49 -0.35 1.86 16 19 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 20 N -0.90 -25.05 11.32 55.43 0.63 -24.42 16 21 Si 0.90 21.90 29.54 -169.99 -5.02 16.87 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 25 H 0.06 0.60 6.31 -51.93 -0.33 0.27 16 26 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.14 1.44 5.00 -52.49 -0.26 1.18 16 29 H 0.13 1.04 8.06 -52.48 -0.42 0.62 16 30 H 0.15 1.33 8.06 -52.49 -0.42 0.91 16 31 H 0.15 2.03 7.97 -52.49 -0.42 1.61 16 32 H 0.05 0.71 5.78 -51.93 -0.30 0.41 16 33 H 0.08 1.29 5.89 -51.93 -0.31 0.98 16 34 H 0.06 0.64 5.59 -51.93 -0.29 0.35 16 35 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.09 2.33 6.07 -51.93 -0.32 2.01 16 37 H 0.02 0.45 4.56 -51.93 -0.24 0.22 16 38 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 302.17 15.07 4.55 4.55 Total: -1.00 -32.27 302.17 -6.59 -38.85 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -4.79 Total: 1.18 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: -1.42 Total: -4.68 kcal Atomic # 7 Polarization: -42.81 SS G_CDS: 0.01 Total: -42.80 kcal Atomic # 8 Polarization: -14.07 SS G_CDS: 0.08 Total: -13.98 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -32.27 -6.59 -38.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596975781.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.914 kcal (2) G-P(sol) polarization free energy of solvation -32.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds