Wall clock time and date at job start Mon Mar 30 2020 06:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47614 * 2 1 4 4 C 1.50705 * 109.46871 * 239.99854 * 2 1 3 5 5 C 1.38672 * 120.41359 * 292.35545 * 4 2 1 6 6 C 1.38631 * 118.41343 * 180.02562 * 5 4 2 7 7 C 1.38229 * 119.16412 * 359.97438 * 6 5 4 8 8 N 1.31845 * 120.76412 * 0.02562 * 7 6 5 9 9 C 1.31890 * 121.72628 * 359.70046 * 8 7 6 10 10 N 1.46504 * 109.46968 * 120.00039 * 2 1 3 11 11 C 1.46496 * 119.99851 * 54.14888 * 10 2 1 12 12 C 1.34772 * 119.99765 * 234.14744 * 10 2 1 13 13 O 1.21288 * 120.00089 * 0.02562 * 12 10 2 14 14 C 1.50701 * 120.00148 * 180.02562 * 12 10 2 15 15 H 1.09004 * 109.46786 * 299.99799 * 14 12 10 16 16 C 1.53000 * 109.47237 * 59.99683 * 14 12 10 17 17 C 1.50695 * 109.47267 * 180.02562 * 14 12 10 18 18 H 1.07997 * 120.00349 * 359.97438 * 17 14 12 19 19 C 1.37879 * 119.99827 * 179.97438 * 17 14 12 20 20 N 1.31514 * 120.00244 * 0.02562 * 19 17 14 21 21 Si 1.86802 * 120.00104 * 179.97438 * 19 17 14 22 22 H 1.48506 * 109.46970 * 90.00153 * 21 19 17 23 23 H 1.48499 * 109.47368 * 210.00263 * 21 19 17 24 24 H 1.48506 * 109.46979 * 330.00560 * 21 19 17 25 25 H 1.08993 * 109.47768 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46842 * 300.00404 * 1 2 3 27 27 H 1.08999 * 109.47037 * 59.99896 * 1 2 3 28 28 H 1.07995 * 120.79430 * 359.97438 * 5 4 2 29 29 H 1.08007 * 120.41970 * 180.02562 * 6 5 4 30 30 H 1.08001 * 119.61748 * 179.97438 * 7 6 5 31 31 H 1.08000 * 119.62193 * 180.31750 * 9 8 7 32 32 H 1.08998 * 109.47057 * 88.46545 * 11 10 2 33 33 H 1.09004 * 109.46815 * 208.45749 * 11 10 2 34 34 H 1.08997 * 109.47128 * 328.45549 * 11 10 2 35 35 H 1.09004 * 109.46403 * 60.00225 * 16 14 12 36 36 H 1.08999 * 109.47432 * 180.02562 * 16 14 12 37 37 H 1.09001 * 109.47020 * 300.00704 * 16 14 12 38 38 H 0.96995 * 120.00070 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 6 1.8374 -2.0751 -1.3820 6 6 2.3170 -2.6865 -2.5300 7 6 2.9683 -1.9210 -3.4790 8 7 3.1356 -0.6253 -3.3014 9 6 2.6881 -0.0094 -2.2244 10 7 2.0183 -0.6906 1.1962 11 6 1.5618 -2.0503 1.4946 12 6 2.8874 -0.0751 2.0221 13 8 3.2649 1.0508 1.7752 14 6 3.3902 -0.7856 3.2523 15 1 2.5476 -1.0369 3.8965 16 6 4.1168 -2.0674 2.8398 17 6 4.3416 0.1139 3.9984 18 1 4.5607 1.1012 3.6195 19 6 4.9324 -0.3237 5.1648 20 7 4.6661 -1.5261 5.6260 21 14 6.1123 0.7910 6.0893 22 1 5.3549 1.6074 7.0718 23 1 7.1178 -0.0361 6.8035 24 1 6.8022 1.6880 5.1276 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.3250 -2.6479 -0.6233 29 1 2.1827 -3.7474 -2.6814 30 1 3.3452 -2.3899 -4.3759 31 1 2.8394 1.0544 -2.1162 32 1 2.2181 -2.7696 1.0047 33 1 1.5847 -2.2130 2.5722 34 1 0.5432 -2.1800 1.1291 35 1 4.9593 -1.8159 2.1955 36 1 4.4801 -2.5815 3.7295 37 1 3.4283 -2.7177 2.3003 38 1 5.0814 -1.8338 6.4468 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596975781.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:06 Heat of formation + Delta-G solvation = -14.591475 kcal Electronic energy + Delta-G solvation = -20075.417056 eV Core-core repulsion = 17110.422261 eV Total energy + Delta-G solvation = -2964.994794 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.62170 -40.47290 -37.33288 -35.93646 -33.95959 -33.00349 -32.01220 -30.36252 -28.17850 -27.14583 -25.50942 -24.40725 -24.14764 -22.01368 -20.13358 -18.46703 -18.05483 -17.75971 -17.40097 -16.83043 -16.55509 -16.05729 -15.72535 -15.03165 -14.76337 -14.67760 -14.51726 -14.34772 -13.96533 -13.56110 -13.26721 -13.19158 -12.96277 -12.83361 -12.68027 -12.67759 -12.28191 -12.21802 -12.01952 -11.88824 -11.03555 -10.77613 -10.61597 -10.52824 -10.23679 -9.92050 -9.55118 -8.16104 -6.25933 0.13838 0.34677 1.38872 1.39656 1.51505 1.88582 2.16610 2.45129 2.89990 3.13313 3.47320 3.68205 3.90480 4.04123 4.05920 4.19309 4.26464 4.29448 4.43116 4.61830 4.64282 4.72072 4.79822 4.86444 4.87401 4.94006 4.97967 5.06098 5.18262 5.24008 5.31196 5.48281 5.69570 5.74910 5.78846 5.94194 6.20005 6.56066 6.82006 7.01355 7.38731 7.48419 8.89533 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.028730 B = 0.005138 C = 0.005114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.365779 B = 5448.401435 C = 5474.049605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.174 3.826 3 H 0.078 0.922 4 C -0.146 4.146 5 C -0.074 4.074 6 C -0.164 4.164 7 C 0.082 3.918 8 N -0.512 5.512 9 C 0.087 3.913 10 N -0.611 5.611 11 C 0.066 3.934 12 C 0.519 3.481 13 O -0.589 6.589 14 C 0.031 3.969 15 H 0.044 0.956 16 C -0.127 4.127 17 C -0.531 4.531 18 H 0.044 0.956 19 C 0.022 3.978 20 N -0.909 5.909 21 Si 0.953 3.047 22 H -0.273 1.273 23 H -0.273 1.273 24 H -0.282 1.282 25 H 0.083 0.917 26 H 0.058 0.942 27 H 0.081 0.919 28 H 0.161 0.839 29 H 0.171 0.829 30 H 0.181 0.819 31 H 0.147 0.853 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.103 0.897 35 H 0.010 0.990 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.314 -7.071 -13.991 18.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.070 3.930 3 H 0.096 0.904 4 C -0.149 4.149 5 C -0.100 4.100 6 C -0.184 4.184 7 C -0.075 4.075 8 N -0.221 5.221 9 C -0.070 4.070 10 N -0.344 5.344 11 C -0.076 4.076 12 C 0.310 3.690 13 O -0.468 6.468 14 C 0.010 3.990 15 H 0.062 0.938 16 C -0.185 4.185 17 C -0.569 4.569 18 H 0.063 0.937 19 C -0.177 4.177 20 N -0.548 5.548 21 Si 0.778 3.222 22 H -0.198 1.198 23 H -0.198 1.198 24 H -0.207 1.207 25 H 0.101 0.899 26 H 0.078 0.922 27 H 0.100 0.900 28 H 0.178 0.822 29 H 0.188 0.812 30 H 0.198 0.802 31 H 0.165 0.835 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.122 0.878 35 H 0.030 0.970 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -9.642 -6.119 -14.603 18.538 hybrid contribution 0.551 0.437 1.352 1.524 sum -9.090 -5.682 -13.251 17.044 Atomic orbital electron populations 1.22065 0.91282 1.03958 1.03033 1.19847 0.95968 0.96004 0.81218 0.90377 1.21166 1.00621 0.96266 0.96825 1.22044 0.96681 0.93400 0.97887 1.22531 0.98761 1.03004 0.94063 1.23331 0.95137 0.89091 0.99968 1.67685 1.18823 1.12776 1.22850 1.22716 0.93970 1.00615 0.89684 1.48024 1.45386 1.17271 1.23696 1.22313 1.01021 0.81526 1.02712 1.21723 0.76575 0.85716 0.84987 1.90491 1.59175 1.21596 1.75585 1.18735 0.96252 0.94523 0.89532 0.93815 1.21788 0.98749 0.97036 1.00908 1.21295 1.26794 1.00922 1.07920 0.93749 1.25548 0.97975 0.96581 0.97634 1.69930 1.44675 1.17918 1.22256 0.85643 0.79049 0.78997 0.78474 1.19832 1.19824 1.20722 0.89858 0.92249 0.90029 0.82204 0.81161 0.80224 0.83530 0.91338 0.90832 0.87844 0.97041 0.91113 0.91489 0.92567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.01 8.93 71.98 0.64 -2.36 16 2 C 0.17 5.02 2.96 44.24 0.13 5.15 16 3 H 0.08 2.74 6.69 -2.39 -0.02 2.72 16 4 C -0.15 -3.83 4.96 -19.77 -0.10 -3.93 16 5 C -0.07 -1.52 8.40 22.47 0.19 -1.34 16 6 C -0.16 -2.88 10.11 22.36 0.23 -2.65 16 7 C 0.08 1.71 11.18 84.69 0.95 2.65 16 8 N -0.51 -14.28 10.36 -195.84 -2.03 -16.31 16 9 C 0.09 2.49 10.83 84.67 0.92 3.41 16 10 N -0.61 -20.62 2.75 -826.79 -2.27 -22.89 16 11 C 0.07 1.63 6.67 127.77 0.85 2.48 16 12 C 0.52 24.20 7.07 87.66 0.62 24.82 16 13 O -0.59 -32.14 14.80 -3.05 -0.05 -32.19 16 14 C 0.03 1.54 1.83 -12.29 -0.02 1.52 16 15 H 0.04 2.26 7.40 -2.39 -0.02 2.24 16 16 C -0.13 -5.80 8.59 71.98 0.62 -5.18 16 17 C -0.53 -31.23 8.37 25.60 0.21 -31.01 16 18 H 0.04 2.82 6.75 -2.91 -0.02 2.80 16 19 C 0.02 1.24 5.30 84.66 0.45 1.68 16 20 N -0.91 -50.84 11.32 21.45 0.24 -50.59 16 21 Si 0.95 45.42 29.54 68.60 2.03 47.45 16 22 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 23 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 24 H -0.28 -13.76 7.11 99.48 0.71 -13.05 16 25 H 0.08 1.31 6.31 -2.39 -0.02 1.30 16 26 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.16 2.50 5.00 -2.91 -0.01 2.49 16 29 H 0.17 1.68 8.06 -2.91 -0.02 1.66 16 30 H 0.18 2.54 8.06 -2.91 -0.02 2.52 16 31 H 0.15 4.17 7.97 -2.91 -0.02 4.14 16 32 H 0.07 1.54 5.78 -2.39 -0.01 1.52 16 33 H 0.07 2.06 5.89 -2.38 -0.01 2.04 16 34 H 0.10 1.70 5.59 -2.39 -0.01 1.69 16 35 H 0.01 0.51 8.14 -2.38 -0.02 0.49 16 36 H 0.07 3.55 6.07 -2.39 -0.01 3.54 16 37 H 0.07 2.41 4.56 -2.39 -0.01 2.40 16 38 H 0.27 14.02 8.31 -92.71 -0.77 13.25 16 Total: -1.00 -73.03 302.17 4.68 -68.35 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: 1.07 Total: 10.94 kcal Atomic # 6 Polarization: -10.45 SS G_CDS: 5.69 Total: -4.76 kcal Atomic # 7 Polarization: -85.73 SS G_CDS: -4.06 Total: -89.79 kcal Atomic # 8 Polarization: -32.14 SS G_CDS: -0.05 Total: -32.19 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Total: -73.03 4.68 -68.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596975781.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.761 kcal (2) G-P(sol) polarization free energy of solvation -73.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds