Wall clock time and date at job start Mon Mar 30 2020 06:46:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52999 * 109.47255 * 2 1 4 4 H 1.08995 * 109.47098 * 54.99720 * 3 2 1 5 5 N 1.46498 * 109.47257 * 294.99786 * 3 2 1 6 6 C 1.34777 * 119.99828 * 84.72116 * 5 3 2 7 7 O 1.21283 * 120.00222 * 0.28168 * 6 5 3 8 8 C 1.50703 * 120.00290 * 180.27728 * 6 5 3 9 9 H 1.08998 * 109.46954 * 300.00581 * 8 6 5 10 10 C 1.53001 * 109.46771 * 60.00208 * 8 6 5 11 11 C 1.50701 * 109.47355 * 180.02562 * 8 6 5 12 12 H 1.08000 * 119.99624 * 0.02562 * 11 8 6 13 13 C 1.37872 * 119.99634 * 179.97438 * 11 8 6 14 14 N 1.31513 * 119.99847 * 180.02562 * 13 11 8 15 15 Si 1.86800 * 120.00323 * 0.02562 * 13 11 8 16 16 H 1.48499 * 109.47502 * 89.99762 * 15 13 11 17 17 H 1.48507 * 109.47078 * 209.99680 * 15 13 11 18 18 H 1.48503 * 109.46936 * 329.99407 * 15 13 11 19 19 C 1.50696 * 109.47087 * 174.99816 * 3 2 1 20 20 C 1.38656 * 120.79249 * 79.72116 * 19 3 2 21 21 C 1.38196 * 119.16583 * 179.75306 * 20 19 3 22 22 N 1.31873 * 120.76512 * 0.53321 * 21 20 19 23 23 C 1.31873 * 121.72310 * 359.73978 * 22 21 20 24 24 C 1.38208 * 120.76585 * 359.97438 * 23 22 21 25 25 H 1.08997 * 109.47521 * 60.00105 * 1 2 3 26 26 H 1.09005 * 109.47269 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47462 * 300.00060 * 1 2 3 28 28 H 1.08997 * 109.47253 * 239.99716 * 2 1 3 29 29 H 1.09001 * 109.47082 * 119.99695 * 2 1 3 30 30 H 0.97001 * 120.00384 * 265.00562 * 5 3 2 31 31 H 1.08998 * 109.46818 * 180.02562 * 10 8 6 32 32 H 1.09008 * 109.47076 * 299.99851 * 10 8 6 33 33 H 1.08992 * 109.47503 * 60.00389 * 10 8 6 34 34 H 0.97000 * 120.00464 * 179.97438 * 14 13 11 35 35 H 1.08001 * 120.41042 * 359.97438 * 20 19 3 36 36 H 1.08000 * 119.61946 * 180.24874 * 21 20 19 37 37 H 1.08000 * 119.61465 * 180.02562 * 23 22 21 38 38 H 1.08000 * 120.41813 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8417 5 7 1.6525 2.0975 -1.2518 6 6 0.4331 2.6595 -1.3689 7 8 -0.3415 2.6275 -0.4362 8 6 0.0320 3.3278 -2.6587 9 1 0.7205 4.1451 -2.8738 10 6 0.0797 2.3077 -3.7979 11 6 -1.3675 3.8715 -2.5288 12 1 -1.9119 3.7460 -1.6046 13 6 -1.9523 4.5300 -3.5896 14 7 -3.1734 5.0049 -3.4761 15 14 -1.0103 4.7476 -5.1879 16 1 -1.2764 3.5913 -6.0808 17 1 -1.4499 5.9995 -5.8551 18 1 0.4442 4.8254 -4.8986 19 6 3.5418 1.4442 0.1239 20 6 4.3453 1.1986 -0.9791 21 6 5.7189 1.2134 -0.8284 22 7 6.2659 1.4470 0.3486 23 6 5.5330 1.6791 1.4200 24 6 4.1530 1.6860 1.3447 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8932 -0.5138 0.8900 30 1 2.2719 2.1231 -1.9978 31 1 -0.2099 2.7911 -4.7309 32 1 1.0922 1.9148 -3.8917 33 1 -0.6086 1.4904 -3.5830 34 1 -3.5849 5.4685 -4.2223 35 1 3.9032 1.0017 -1.9446 36 1 6.3518 1.0270 -1.6835 37 1 6.0168 1.8669 2.3672 38 1 3.5582 1.8771 2.2257 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597291067.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:51 Heat of formation + Delta-G solvation = -5.484042 kcal Electronic energy + Delta-G solvation = -19808.306825 eV Core-core repulsion = 16843.706958 eV Total energy + Delta-G solvation = -2964.599866 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.58551 -39.15498 -35.99466 -33.86529 -32.27557 -31.97634 -31.37676 -30.87312 -26.64787 -25.16276 -23.77437 -22.97667 -22.70589 -20.61822 -19.53924 -17.29974 -16.89323 -16.44340 -15.79988 -15.55329 -15.35368 -15.05307 -14.49378 -14.00688 -13.81866 -13.53301 -13.35161 -13.22177 -12.67940 -12.38838 -12.30510 -11.76524 -11.64841 -11.43162 -11.26523 -11.01299 -10.70632 -10.54803 -10.32524 -9.78632 -9.68272 -9.64341 -9.34028 -9.12378 -8.72717 -8.59689 -8.57395 -6.06952 -4.07282 0.94992 1.04037 3.21238 3.28857 3.34835 3.51702 3.56182 3.75097 4.27628 4.35501 4.36202 4.63901 4.89472 4.97766 5.15263 5.18955 5.23308 5.38118 5.48707 5.56453 5.67251 5.79144 5.85831 5.94475 6.07226 6.13935 6.16324 6.27673 6.34774 6.43267 6.50610 6.68646 6.74891 6.90341 7.12890 7.51838 7.78020 8.05270 8.52603 9.04047 9.13311 9.52095 11.05962 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.026607 B = 0.005243 C = 0.004781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.114842 B = 5339.516478 C = 5854.915217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.124 4.124 3 C 0.182 3.818 4 H 0.098 0.902 5 N -0.742 5.742 6 C 0.530 3.470 7 O -0.522 6.522 8 C -0.005 4.005 9 H 0.051 0.949 10 C -0.144 4.144 11 C -0.505 4.505 12 H 0.094 0.906 13 C 0.070 3.930 14 N -0.895 5.895 15 Si 0.883 3.117 16 H -0.278 1.278 17 H -0.296 1.296 18 H -0.268 1.268 19 C -0.038 4.038 20 C -0.167 4.167 21 C 0.100 3.900 22 N -0.490 5.490 23 C 0.099 3.901 24 C -0.163 4.163 25 H 0.069 0.931 26 H 0.043 0.957 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.394 0.606 31 H 0.049 0.951 32 H 0.031 0.969 33 H 0.058 0.942 34 H 0.264 0.736 35 H 0.135 0.865 36 H 0.156 0.844 37 H 0.156 0.844 38 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.315 -9.491 4.933 19.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.163 4.163 3 C 0.076 3.924 4 H 0.116 0.884 5 N -0.397 5.397 6 C 0.319 3.681 7 O -0.396 6.396 8 C -0.027 4.027 9 H 0.069 0.931 10 C -0.202 4.202 11 C -0.543 4.543 12 H 0.112 0.888 13 C -0.131 4.131 14 N -0.533 5.533 15 Si 0.714 3.286 16 H -0.205 1.205 17 H -0.223 1.223 18 H -0.193 1.193 19 C -0.047 4.047 20 C -0.187 4.187 21 C -0.056 4.056 22 N -0.200 5.200 23 C -0.057 4.057 24 C -0.183 4.183 25 H 0.088 0.912 26 H 0.062 0.938 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.228 0.772 31 H 0.067 0.933 32 H 0.050 0.950 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.153 0.847 36 H 0.173 0.827 37 H 0.173 0.827 38 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 16.462 -9.390 5.611 19.765 hybrid contribution -0.181 0.160 -1.463 1.483 sum 16.281 -9.231 4.147 19.170 Atomic orbital electron populations 1.21836 0.93901 1.00497 1.04202 1.21914 0.97714 0.94863 1.01768 1.19823 0.88009 0.94453 0.90093 0.88389 1.46378 1.18049 1.60206 1.15093 1.21223 0.79492 0.76365 0.91027 1.90595 1.50793 1.57268 1.40925 1.19319 1.00212 0.94503 0.88626 0.93144 1.22119 0.98985 0.99939 0.99142 1.20924 0.96159 1.34999 1.02200 0.88805 1.24976 0.94745 0.95113 0.98277 1.69877 1.13526 1.37970 1.31977 0.86932 0.80604 0.76721 0.84377 1.20532 1.22312 1.19311 1.20523 0.96076 0.94459 0.93615 1.21992 0.95029 1.02006 0.99696 1.22740 0.92639 0.95038 0.95223 1.67676 1.41134 1.11704 0.99437 1.22749 0.90678 0.95111 0.97205 1.22060 0.96335 1.01646 0.98299 0.91246 0.93775 0.92064 0.91932 0.91714 0.77179 0.93282 0.94962 0.92333 0.92561 0.84743 0.82717 0.82703 0.84516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 8.51 37.15 0.32 -1.93 16 2 C -0.12 -1.55 5.59 -26.74 -0.15 -1.70 16 3 C 0.18 2.42 2.49 -69.09 -0.17 2.25 16 4 H 0.10 1.47 7.48 -51.93 -0.39 1.08 16 5 N -0.74 -11.37 4.88 -54.94 -0.27 -11.64 16 6 C 0.53 10.88 5.71 -10.98 -0.06 10.82 16 7 O -0.52 -12.41 12.58 5.55 0.07 -12.34 16 8 C 0.00 -0.11 2.23 -92.92 -0.21 -0.32 16 9 H 0.05 1.13 7.20 -51.93 -0.37 0.75 16 10 C -0.14 -2.86 8.57 37.16 0.32 -2.54 16 11 C -0.50 -14.26 8.96 -34.44 -0.31 -14.57 16 12 H 0.09 3.02 7.00 -52.49 -0.37 2.65 16 13 C 0.07 2.01 5.45 -17.82 -0.10 1.91 16 14 N -0.90 -27.41 13.96 55.43 0.77 -26.63 16 15 Si 0.88 21.08 24.37 -169.99 -4.14 16.93 16 16 H -0.28 -6.42 6.87 56.52 0.39 -6.03 16 17 H -0.30 -7.15 7.11 56.52 0.40 -6.74 16 18 H -0.27 -5.95 6.53 56.52 0.37 -5.58 16 19 C -0.04 -0.43 4.98 -104.32 -0.52 -0.95 16 20 C -0.17 -1.71 9.15 -39.44 -0.36 -2.07 16 21 C 0.10 1.01 11.18 -17.55 -0.20 0.82 16 22 N -0.49 -5.62 10.36 -13.25 -0.14 -5.76 16 23 C 0.10 1.00 11.18 -17.54 -0.20 0.80 16 24 C -0.16 -1.67 9.78 -39.44 -0.39 -2.06 16 25 H 0.07 1.28 5.63 -51.93 -0.29 0.98 16 26 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.06 1.00 7.84 -51.93 -0.41 0.59 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.39 5.13 6.39 -40.82 -0.26 4.87 16 31 H 0.05 1.03 3.27 -51.93 -0.17 0.86 16 32 H 0.03 0.50 7.56 -51.92 -0.39 0.10 16 33 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 35 H 0.13 1.16 7.03 -52.49 -0.37 0.79 16 36 H 0.16 1.16 8.06 -52.49 -0.42 0.73 16 37 H 0.16 1.13 8.06 -52.49 -0.42 0.71 16 38 H 0.14 1.17 8.06 -52.49 -0.42 0.74 16 LS Contribution 304.90 15.07 4.59 4.59 Total: -1.00 -32.85 304.90 -6.29 -39.14 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -5.16 Total: 5.23 kcal Atomic # 6 Polarization: -7.51 SS G_CDS: -2.02 Total: -9.53 kcal Atomic # 7 Polarization: -44.39 SS G_CDS: 0.37 Total: -44.03 kcal Atomic # 8 Polarization: -12.41 SS G_CDS: 0.07 Total: -12.34 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.14 Total: 16.93 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -32.85 -6.29 -39.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597291067.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.661 kcal (2) G-P(sol) polarization free energy of solvation -32.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds