Wall clock time and date at job start Mon Mar 30 2020 06:46:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52999 * 109.47255 * 2 1 4 4 H 1.08995 * 109.47098 * 54.99720 * 3 2 1 5 5 N 1.46498 * 109.47257 * 294.99786 * 3 2 1 6 6 C 1.34777 * 119.99828 * 84.72116 * 5 3 2 7 7 O 1.21283 * 120.00222 * 0.28168 * 6 5 3 8 8 C 1.50703 * 120.00290 * 180.27728 * 6 5 3 9 9 H 1.08998 * 109.46954 * 300.00581 * 8 6 5 10 10 C 1.53001 * 109.46771 * 60.00208 * 8 6 5 11 11 C 1.50701 * 109.47355 * 180.02562 * 8 6 5 12 12 H 1.08000 * 119.99624 * 0.02562 * 11 8 6 13 13 C 1.37872 * 119.99634 * 179.97438 * 11 8 6 14 14 N 1.31513 * 119.99847 * 180.02562 * 13 11 8 15 15 Si 1.86800 * 120.00323 * 0.02562 * 13 11 8 16 16 H 1.48499 * 109.47502 * 89.99762 * 15 13 11 17 17 H 1.48507 * 109.47078 * 209.99680 * 15 13 11 18 18 H 1.48503 * 109.46936 * 329.99407 * 15 13 11 19 19 C 1.50696 * 109.47087 * 174.99816 * 3 2 1 20 20 C 1.38656 * 120.79249 * 79.72116 * 19 3 2 21 21 C 1.38196 * 119.16583 * 179.75306 * 20 19 3 22 22 N 1.31873 * 120.76512 * 0.53321 * 21 20 19 23 23 C 1.31873 * 121.72310 * 359.73978 * 22 21 20 24 24 C 1.38208 * 120.76585 * 359.97438 * 23 22 21 25 25 H 1.08997 * 109.47521 * 60.00105 * 1 2 3 26 26 H 1.09005 * 109.47269 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47462 * 300.00060 * 1 2 3 28 28 H 1.08997 * 109.47253 * 239.99716 * 2 1 3 29 29 H 1.09001 * 109.47082 * 119.99695 * 2 1 3 30 30 H 0.97001 * 120.00384 * 265.00562 * 5 3 2 31 31 H 1.08998 * 109.46818 * 180.02562 * 10 8 6 32 32 H 1.09008 * 109.47076 * 299.99851 * 10 8 6 33 33 H 1.08992 * 109.47503 * 60.00389 * 10 8 6 34 34 H 0.97000 * 120.00464 * 179.97438 * 14 13 11 35 35 H 1.08001 * 120.41042 * 359.97438 * 20 19 3 36 36 H 1.08000 * 119.61946 * 180.24874 * 21 20 19 37 37 H 1.08000 * 119.61465 * 180.02562 * 23 22 21 38 38 H 1.08000 * 120.41813 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8417 5 7 1.6525 2.0975 -1.2518 6 6 0.4331 2.6595 -1.3689 7 8 -0.3415 2.6275 -0.4362 8 6 0.0320 3.3278 -2.6587 9 1 0.7205 4.1451 -2.8738 10 6 0.0797 2.3077 -3.7979 11 6 -1.3675 3.8715 -2.5288 12 1 -1.9119 3.7460 -1.6046 13 6 -1.9523 4.5300 -3.5896 14 7 -3.1734 5.0049 -3.4761 15 14 -1.0103 4.7476 -5.1879 16 1 -1.2764 3.5913 -6.0808 17 1 -1.4499 5.9995 -5.8551 18 1 0.4442 4.8254 -4.8986 19 6 3.5418 1.4442 0.1239 20 6 4.3453 1.1986 -0.9791 21 6 5.7189 1.2134 -0.8284 22 7 6.2659 1.4470 0.3486 23 6 5.5330 1.6791 1.4200 24 6 4.1530 1.6860 1.3447 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8932 -0.5138 0.8900 30 1 2.2719 2.1231 -1.9978 31 1 -0.2099 2.7911 -4.7309 32 1 1.0922 1.9148 -3.8917 33 1 -0.6086 1.4904 -3.5830 34 1 -3.5849 5.4685 -4.2223 35 1 3.9032 1.0017 -1.9446 36 1 6.3518 1.0270 -1.6835 37 1 6.0168 1.8669 2.3672 38 1 3.5582 1.8771 2.2257 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597291067.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:51 Heat of formation + Delta-G solvation = -29.198897 kcal Electronic energy + Delta-G solvation = -19809.335178 eV Core-core repulsion = 16843.706958 eV Total energy + Delta-G solvation = -2965.628220 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.55325 -40.49857 -37.25406 -35.75698 -33.85324 -32.97757 -32.64588 -32.06666 -27.80870 -27.06813 -24.84965 -24.35123 -23.64004 -21.78924 -21.05812 -18.82128 -18.40357 -17.63610 -17.04794 -16.70459 -16.52448 -16.34175 -16.06819 -15.06275 -15.01106 -14.72072 -14.59041 -14.46972 -14.27197 -13.94230 -13.63927 -13.37126 -12.83979 -12.65376 -12.59612 -12.45807 -12.28009 -12.09382 -11.82260 -11.46526 -11.19772 -10.77237 -10.69059 -10.48087 -10.33382 -10.07001 -9.91732 -8.25721 -6.32953 0.21790 0.22161 1.33396 1.39945 1.50850 1.91429 2.32461 2.35583 2.88927 3.08299 3.39162 3.63144 3.86110 4.01424 4.13982 4.17908 4.21866 4.25040 4.43331 4.44866 4.60907 4.64371 4.70740 4.80341 4.87934 4.91739 4.98636 5.01071 5.04893 5.14934 5.31765 5.44124 5.50141 5.55257 5.64010 5.77300 6.27603 6.68519 6.86787 7.03912 7.28630 7.53954 8.91890 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.026607 B = 0.005243 C = 0.004781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.114842 B = 5339.516478 C = 5854.915217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.115 4.115 3 C 0.185 3.815 4 H 0.076 0.924 5 N -0.719 5.719 6 C 0.532 3.468 7 O -0.567 6.567 8 C -0.010 4.010 9 H 0.064 0.936 10 C -0.139 4.139 11 C -0.516 4.516 12 H 0.032 0.968 13 C 0.006 3.994 14 N -0.954 5.954 15 Si 0.958 3.042 16 H -0.261 1.261 17 H -0.302 1.302 18 H -0.231 1.231 19 C -0.049 4.049 20 C -0.166 4.166 21 C 0.096 3.904 22 N -0.511 5.511 23 C 0.095 3.905 24 C -0.168 4.168 25 H 0.034 0.966 26 H 0.060 0.940 27 H 0.038 0.962 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.409 0.591 31 H 0.043 0.957 32 H 0.085 0.915 33 H 0.047 0.953 34 H 0.266 0.734 35 H 0.154 0.846 36 H 0.181 0.819 37 H 0.178 0.822 38 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.086 -10.817 3.333 23.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.154 4.154 3 C 0.080 3.920 4 H 0.094 0.906 5 N -0.374 5.374 6 C 0.320 3.680 7 O -0.444 6.444 8 C -0.032 4.032 9 H 0.082 0.918 10 C -0.196 4.196 11 C -0.554 4.554 12 H 0.050 0.950 13 C -0.191 4.191 14 N -0.594 5.594 15 Si 0.783 3.217 16 H -0.186 1.186 17 H -0.230 1.230 18 H -0.155 1.155 19 C -0.058 4.058 20 C -0.186 4.186 21 C -0.060 4.060 22 N -0.221 5.221 23 C -0.061 4.061 24 C -0.188 4.188 25 H 0.054 0.946 26 H 0.079 0.921 27 H 0.057 0.943 28 H 0.098 0.902 29 H 0.105 0.895 30 H 0.247 0.753 31 H 0.062 0.938 32 H 0.104 0.896 33 H 0.066 0.934 34 H 0.075 0.925 35 H 0.171 0.829 36 H 0.198 0.802 37 H 0.195 0.805 38 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 20.305 -10.752 4.017 23.324 hybrid contribution -1.376 0.552 -0.815 1.692 sum 18.928 -10.200 3.202 21.739 Atomic orbital electron populations 1.21758 0.96289 1.00654 1.01432 1.21864 0.95287 0.94552 1.03688 1.19816 0.89674 0.94424 0.88067 0.90609 1.46037 1.16282 1.58614 1.16470 1.20868 0.80705 0.76595 0.89842 1.90593 1.52587 1.59194 1.42070 1.19268 0.96814 0.95922 0.91184 0.91782 1.22013 1.02065 0.98574 0.96987 1.21093 0.98867 1.35468 1.00020 0.95006 1.26011 0.95665 0.94454 1.02933 1.70077 1.16092 1.39632 1.33586 0.85738 0.80753 0.76748 0.78489 1.18645 1.23019 1.15459 1.20345 0.94446 0.96208 0.94787 1.22177 0.95064 1.01371 0.99983 1.23180 0.92978 0.94233 0.95607 1.67727 1.41884 1.12256 1.00230 1.23129 0.90584 0.94476 0.97931 1.22234 0.96741 1.01304 0.98489 0.94648 0.92066 0.94256 0.90151 0.89515 0.75302 0.93815 0.89591 0.93428 0.92511 0.82861 0.80222 0.80472 0.83461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.40 8.51 71.98 0.61 -3.78 16 2 C -0.12 -2.64 5.59 30.59 0.17 -2.47 16 3 C 0.18 4.63 2.49 44.24 0.11 4.74 16 4 H 0.08 2.28 7.48 -2.39 -0.02 2.26 16 5 N -0.72 -20.58 4.88 -446.11 -2.18 -22.76 16 6 C 0.53 21.82 5.71 87.66 0.50 22.32 16 7 O -0.57 -28.36 12.58 -3.04 -0.04 -28.40 16 8 C -0.01 -0.45 2.23 -12.28 -0.03 -0.48 16 9 H 0.06 2.68 7.20 -2.39 -0.02 2.66 16 10 C -0.14 -5.08 8.57 71.98 0.62 -4.46 16 11 C -0.52 -30.32 8.96 25.60 0.23 -30.10 16 12 H 0.03 2.21 7.00 -2.91 -0.02 2.19 16 13 C 0.01 0.33 5.45 84.65 0.46 0.79 16 14 N -0.95 -61.02 13.96 21.45 0.30 -60.72 16 15 Si 0.96 42.74 24.37 68.60 1.67 44.41 16 16 H -0.26 -10.86 6.87 99.48 0.68 -10.18 16 17 H -0.30 -13.73 7.11 99.48 0.71 -13.03 16 18 H -0.23 -8.91 6.53 99.48 0.65 -8.26 16 19 C -0.05 -0.98 4.98 -19.67 -0.10 -1.08 16 20 C -0.17 -2.75 9.15 22.36 0.20 -2.55 16 21 C 0.10 1.60 11.18 84.68 0.95 2.54 16 22 N -0.51 -10.21 10.36 -195.84 -2.03 -12.24 16 23 C 0.09 1.66 11.18 84.68 0.95 2.61 16 24 C -0.17 -3.05 9.78 22.36 0.22 -2.83 16 25 H 0.03 1.31 5.63 -2.39 -0.01 1.30 16 26 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16 27 H 0.04 1.33 7.84 -2.38 -0.02 1.32 16 28 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.09 1.65 8.14 -2.39 -0.02 1.64 16 30 H 0.41 9.05 6.39 -92.71 -0.59 8.45 16 31 H 0.04 1.65 3.27 -2.39 -0.01 1.64 16 32 H 0.09 2.21 7.56 -2.38 -0.02 2.19 16 33 H 0.05 1.82 8.14 -2.39 -0.02 1.81 16 34 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 35 H 0.15 1.88 7.03 -2.91 -0.02 1.86 16 36 H 0.18 1.92 8.06 -2.91 -0.02 1.90 16 37 H 0.18 2.11 8.06 -2.91 -0.02 2.08 16 38 H 0.15 2.27 8.06 -2.91 -0.02 2.24 16 Total: -1.00 -77.21 304.90 3.01 -74.19 By element: Atomic # 1 Polarization: 19.87 SS G_CDS: 0.40 Total: 20.26 kcal Atomic # 6 Polarization: -19.64 SS G_CDS: 4.89 Total: -14.75 kcal Atomic # 7 Polarization: -91.81 SS G_CDS: -3.91 Total: -95.72 kcal Atomic # 8 Polarization: -28.36 SS G_CDS: -0.04 Total: -28.40 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 1.67 Total: 44.41 kcal Total: -77.21 3.01 -74.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597291067.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.993 kcal (2) G-P(sol) polarization free energy of solvation -77.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds